NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
614050 |
5lnf   |
34030 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_5lnf
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 140
_NOE_completeness_stats.Total_atom_count 2187
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 763
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 60.1
_NOE_completeness_stats.Constraint_unexpanded_count 3543
_NOE_completeness_stats.Constraint_count 3543
_NOE_completeness_stats.Constraint_exp_unfiltered_count 2252
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 20
_NOE_completeness_stats.Constraint_intraresidue_count 822
_NOE_completeness_stats.Constraint_surplus_count 225
_NOE_completeness_stats.Constraint_observed_count 2476
_NOE_completeness_stats.Constraint_expected_count 2066
_NOE_completeness_stats.Constraint_matched_count 1241
_NOE_completeness_stats.Constraint_unmatched_count 1235
_NOE_completeness_stats.Constraint_exp_nonobs_count 825
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 968 728 484 66.5 1.0 .
medium-range 920 719 420 58.4 -0.2 .
long-range 588 619 337 54.4 -0.8 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 34 32 0 2 14 10 6 0 0 0 . 0 94.1 94.1
shell 2.00 2.50 226 173 0 15 54 55 38 10 1 0 . 0 76.5 78.8
shell 2.50 3.00 413 312 0 3 107 108 62 25 7 0 . 0 75.5 76.8
shell 3.00 3.50 552 332 0 0 30 104 114 62 20 2 . 0 60.1 69.3
shell 3.50 4.00 841 392 0 0 1 70 141 131 39 6 . 4 46.6 60.1
shell 4.00 4.50 1329 504 0 0 0 2 144 219 106 23 . 10 37.9 51.4
shell 4.50 5.00 1780 390 0 0 0 0 11 158 162 45 . 14 21.9 41.3
shell 5.00 5.50 2167 228 0 0 0 0 1 10 114 75 . 28 10.5 32.2
shell 5.50 6.00 2459 90 0 0 0 0 0 0 11 44 . 35 3.7 25.0
shell 6.00 6.50 2597 22 0 0 0 0 0 0 0 4 . 18 0.8 20.0
shell 6.50 7.00 2882 1 0 0 0 0 0 0 0 1 . 0 0.0 16.2
shell 7.00 7.50 3141 0 0 0 0 0 0 0 0 0 . 0 0.0 13.4
shell 7.50 8.00 3454 0 0 0 0 0 0 0 0 0 . 0 0.0 11.3
shell 8.00 8.50 3572 0 0 0 0 0 0 0 0 0 . 0 0.0 9.7
shell 8.50 9.00 3739 0 0 0 0 0 0 0 0 0 . 0 0.0 8.5
sums . . 29186 2476 0 20 206 349 517 615 460 200 . 109 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 GLY 3 0 2 0 0.0 -3.7 >sigma
1 2 MET 6 3 6 2 33.3 -1.6 >sigma
1 3 ASP 4 4 7 3 42.9 -1.0 >sigma
1 4 GLU 5 2 7 2 28.6 -1.9 >sigma
1 5 GLY 3 3 7 3 42.9 -1.0 >sigma
1 6 ASP 4 7 7 5 71.4 0.7 .
1 7 GLY 3 7 6 3 50.0 -0.6 .
1 8 GLU 5 9 11 6 54.5 -0.3 .
1 9 GLY 3 9 9 5 55.6 -0.2 .
1 10 ASN 6 14 14 7 50.0 -0.6 .
1 11 ILE 6 29 35 14 40.0 -1.2 >sigma
1 12 LEU 7 24 23 14 60.9 0.1 .
1 13 PRO 5 24 23 11 47.8 -0.7 .
1 14 ILE 6 20 36 13 36.1 -1.5 >sigma
1 15 MET 6 27 35 13 37.1 -1.4 >sigma
1 16 GLN 7 11 17 5 29.4 -1.9 >sigma
1 17 SER 4 11 19 7 36.8 -1.4 >sigma
1 18 ILE 6 26 38 17 44.7 -0.9 .
1 19 MET 6 34 55 26 47.3 -0.8 .
1 20 GLN 7 16 25 11 44.0 -1.0 .
1 21 ASN 6 32 24 12 50.0 -0.6 .
1 22 LEU 7 35 35 19 54.3 -0.3 .
1 23 LEU 7 39 62 28 45.2 -0.9 .
1 24 SER 4 15 15 4 26.7 -2.0 >sigma
1 25 LYS 7 19 26 9 34.6 -1.6 >sigma
1 26 ASP 4 21 15 12 80.0 1.3 >sigma
1 27 VAL 5 33 23 17 73.9 0.9 .
1 28 LEU 7 53 61 30 49.2 -0.6 .
1 29 TYR 6 48 48 28 58.3 -0.1 .
1 30 PRO 5 25 23 17 73.9 0.9 .
1 31 SER 4 30 22 13 59.1 -0.0 .
1 32 LEU 7 49 53 28 52.8 -0.4 .
1 33 LYS 7 44 35 23 65.7 0.4 .
1 34 GLU 5 41 26 18 69.2 0.6 .
1 35 ILE 6 80 60 40 66.7 0.4 .
1 36 THR 4 56 40 33 82.5 1.4 >sigma
1 37 GLU 5 30 17 13 76.5 1.1 >sigma
1 38 LYS 7 55 35 28 80.0 1.3 >sigma
1 39 TYR 6 96 67 52 77.6 1.1 >sigma
1 40 PRO 5 30 25 18 72.0 0.8 .
1 41 GLU 5 18 19 9 47.4 -0.8 .
1 42 TRP 10 81 64 45 70.3 0.7 .
1 43 LEU 7 98 65 48 73.8 0.9 .
1 44 GLN 7 38 24 15 62.5 0.2 .
1 45 SER 4 21 15 11 73.3 0.9 .
1 46 HIS 6 41 23 13 56.5 -0.2 .
1 47 ARG 7 57 40 27 67.5 0.5 .
1 48 GLU 5 34 22 17 77.3 1.1 >sigma
1 49 SER 4 29 15 10 66.7 0.4 .
1 50 LEU 7 89 51 43 84.3 1.5 >sigma
1 51 PRO 5 27 23 14 60.9 0.1 .
1 52 PRO 5 15 16 11 68.8 0.6 .
1 53 GLU 5 22 24 13 54.2 -0.3 .
1 54 GLN 7 47 47 25 53.2 -0.4 .
1 55 PHE 7 77 57 39 68.4 0.6 .
1 56 GLU 5 30 22 15 68.2 0.5 .
1 57 LYS 7 55 47 24 51.1 -0.5 .
1 58 TYR 6 82 53 43 81.1 1.3 >sigma
1 59 GLN 7 46 35 22 62.9 0.2 .
1 60 GLU 5 38 31 18 58.1 -0.1 .
1 61 GLN 7 80 59 39 66.1 0.4 .
1 62 HIS 6 55 35 27 77.1 1.1 >sigma
1 63 SER 4 33 16 11 68.8 0.6 .
1 64 VAL 5 79 63 42 66.7 0.4 .
1 65 MET 6 79 56 44 78.6 1.2 >sigma
1 66 CYS 4 41 20 15 75.0 1.0 .
1 67 LYS 7 60 38 24 63.2 0.2 .
1 68 ILE 6 88 59 43 72.9 0.8 .
1 69 CYS 4 31 28 17 60.7 0.1 .
1 70 GLU 5 30 23 14 60.9 0.1 .
1 71 GLN 7 55 41 17 41.5 -1.1 >sigma
1 72 PHE 7 69 62 35 56.5 -0.2 .
1 73 GLU 5 28 21 13 61.9 0.1 .
1 74 ALA 3 26 13 10 76.9 1.1 >sigma
1 75 GLU 5 26 27 13 48.1 -0.7 .
1 76 THR 4 39 18 16 88.9 1.8 >sigma
1 77 PRO 5 27 14 12 85.7 1.6 >sigma
1 78 THR 4 18 12 10 83.3 1.5 >sigma
1 79 ASP 4 36 21 15 71.4 0.7 .
1 80 SER 4 25 16 13 81.3 1.4 >sigma
1 81 GLU 5 21 14 10 71.4 0.7 .
1 82 THR 4 36 24 18 75.0 1.0 .
1 83 THR 4 42 33 26 78.8 1.2 >sigma
1 84 GLN 7 37 30 15 50.0 -0.6 .
1 85 LYS 7 41 34 21 61.8 0.1 .
1 86 ALA 3 36 23 17 73.9 0.9 .
1 87 ARG 7 38 55 24 43.6 -1.0 .
1 88 PHE 7 42 30 18 60.0 0.0 .
1 89 GLU 5 42 26 19 73.1 0.8 .
1 90 MET 6 39 34 20 58.8 -0.0 .
1 91 VAL 5 85 54 40 74.1 0.9 .
1 92 LEU 7 69 38 28 73.7 0.9 .
1 93 ASP 4 49 19 14 73.7 0.9 .
1 94 LEU 7 87 62 43 69.4 0.6 .
1 95 MET 6 71 51 34 66.7 0.4 .
1 96 GLN 7 48 32 21 65.6 0.4 .
1 97 GLN 7 43 29 21 72.4 0.8 .
1 98 LEU 7 65 74 39 52.7 -0.4 .
1 99 GLN 7 33 44 22 50.0 -0.6 .
1 100 ASP 4 23 18 10 55.6 -0.2 .
1 101 LEU 7 54 54 29 53.7 -0.4 .
1 102 GLY 3 16 19 6 31.6 -1.7 >sigma
1 103 HIS 6 14 22 8 36.4 -1.4 >sigma
1 104 PRO 5 35 28 21 75.0 1.0 .
1 105 PRO 5 28 39 21 53.8 -0.4 .
1 106 LYS 7 21 14 9 64.3 0.3 .
1 107 GLU 5 40 28 20 71.4 0.7 .
1 108 LEU 7 87 66 45 68.2 0.5 .
1 109 ALA 3 37 23 16 69.6 0.6 .
1 110 GLY 3 14 12 5 41.7 -1.1 >sigma
1 111 GLU 5 13 14 4 28.6 -1.9 >sigma
1 112 MET 6 30 35 17 48.6 -0.7 .
1 113 PRO 5 20 21 13 61.9 0.1 .
1 114 PRO 5 13 6 4 66.7 0.4 .
1 115 GLY 3 18 8 5 62.5 0.2 .
1 116 LEU 7 51 56 26 46.4 -0.8 .
1 117 ASN 6 22 12 8 66.7 0.4 .
1 118 PHE 7 34 43 21 48.8 -0.7 .
1 119 ASP 4 22 12 10 83.3 1.5 >sigma
1 120 LEU 7 36 35 16 45.7 -0.9 .
1 121 ASP 4 20 14 8 57.1 -0.1 .
1 122 ALA 3 33 15 11 73.3 0.9 .
1 123 LEU 7 49 47 29 61.7 0.1 .
1 124 ASN 6 36 18 15 83.3 1.5 >sigma
1 125 LEU 7 22 34 9 26.5 -2.1 >sigma
1 126 SER 4 16 8 6 75.0 1.0 .
1 127 GLY 3 14 9 7 77.8 1.1 >sigma
1 128 PRO 5 20 28 12 42.9 -1.0 >sigma
1 129 PRO 5 11 9 7 77.8 1.1 >sigma
1 130 GLY 3 17 9 7 77.8 1.1 >sigma
1 131 ALA 3 19 21 10 47.6 -0.7 .
1 132 SER 4 7 8 5 62.5 0.2 .
1 133 GLY 3 10 18 7 38.9 -1.3 >sigma
1 134 GLU 5 6 10 3 30.0 -1.8 >sigma
1 135 GLN 7 19 36 11 30.6 -1.8 >sigma
1 136 CYS 4 24 28 14 50.0 -0.6 .
1 137 LEU 7 42 50 23 46.0 -0.8 .
1 138 ILE 6 41 53 25 47.2 -0.8 .
1 139 MET 6 13 17 8 47.1 -0.8 .
stop_
save_
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