NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
537074 |
4a5v   |
18039 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_4a5v
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 10
_NOE_completeness_stats.Residue_count 161
_NOE_completeness_stats.Total_atom_count 2302
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 806
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 54.8
_NOE_completeness_stats.Constraint_unexpanded_count 3372
_NOE_completeness_stats.Constraint_count 4390
_NOE_completeness_stats.Constraint_exp_unfiltered_count 2936
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 36
_NOE_completeness_stats.Constraint_intraresidue_count 1137
_NOE_completeness_stats.Constraint_surplus_count 482
_NOE_completeness_stats.Constraint_observed_count 2735
_NOE_completeness_stats.Constraint_expected_count 2612
_NOE_completeness_stats.Constraint_matched_count 1431
_NOE_completeness_stats.Constraint_unmatched_count 1304
_NOE_completeness_stats.Constraint_exp_nonobs_count 1181
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 773 634 426 67.2 0.9 .
medium-range 558 437 254 58.1 0.0 .
long-range 1404 1541 751 48.7 -0.9 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 76 48 7 24 13 3 1 0 0 0 . 0 63.2 63.2
shell 2.00 2.50 377 247 25 85 76 46 12 0 3 0 . 0 65.5 65.1
shell 2.50 3.00 440 293 6 57 98 83 35 12 1 1 . 0 66.6 65.8
shell 3.00 3.50 680 378 4 26 109 132 74 26 7 0 . 0 55.6 61.4
shell 3.50 4.00 1039 465 0 12 59 204 122 44 22 2 . 0 44.8 54.8
shell 4.00 4.50 1663 530 0 2 20 100 218 119 63 8 . 0 31.9 45.9
shell 4.50 5.00 2158 349 0 1 5 51 118 103 69 2 . 0 16.2 35.9
shell 5.00 5.50 2437 219 0 0 5 19 60 63 63 9 . 0 9.0 28.5
shell 5.50 6.00 2799 106 0 0 1 8 28 34 29 6 . 0 3.8 22.6
shell 6.00 6.50 3176 56 0 0 0 2 8 14 30 2 . 0 1.8 18.1
shell 6.50 7.00 3584 32 0 0 0 1 9 5 14 3 . 0 0.9 14.8
shell 7.00 7.50 3857 9 0 0 0 0 1 3 3 2 . 0 0.2 12.3
shell 7.50 8.00 4360 2 0 0 0 0 0 0 2 0 . 0 0.0 10.3
shell 8.00 8.50 4593 0 0 0 0 0 0 0 0 0 . 0 0.0 8.8
shell 8.50 9.00 4972 0 0 0 0 0 0 0 0 0 . 0 0.0 7.6
sums . . 36211 2734 42 207 386 649 686 423 306 35 . 0 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 SER 4 0 3 0 0.0 -3.3 >sigma
1 2 SER 4 0 7 0 0.0 -3.3 >sigma
1 3 GLU 5 0 17 0 0.0 -3.3 >sigma
1 4 PRO 5 8 26 6 23.1 -1.9 >sigma
1 5 ALA 3 6 14 5 35.7 -1.2 >sigma
1 6 LYS 7 36 78 20 25.6 -1.8 >sigma
1 7 LEU 7 25 36 20 55.6 0.0 .
1 8 ASP 4 8 8 4 50.0 -0.3 .
1 9 LEU 7 47 52 28 53.8 -0.1 .
1 10 SER 4 8 15 5 33.3 -1.3 >sigma
1 11 CYS 4 24 31 16 51.6 -0.2 .
1 12 VAL 5 43 54 25 46.3 -0.5 .
1 13 HIS 6 38 42 22 52.4 -0.2 .
1 14 SER 4 4 25 1 4.0 -3.0 >sigma
1 15 ASP 4 10 6 3 50.0 -0.3 .
1 16 ASN 6 33 19 11 57.9 0.2 .
1 17 LYS 7 53 50 26 52.0 -0.2 .
1 18 GLY 3 39 24 19 79.2 1.4 >sigma
1 19 SER 4 34 37 23 62.2 0.4 .
1 20 ARG 7 23 33 15 45.5 -0.6 .
1 21 ALA 3 21 22 14 63.6 0.5 .
1 22 PRO 5 10 18 5 27.8 -1.6 >sigma
1 23 THR 4 19 23 6 26.1 -1.7 >sigma
1 24 ILE 6 59 46 29 63.0 0.5 .
1 25 GLY 3 15 6 5 83.3 1.7 >sigma
1 26 GLU 5 10 9 4 44.4 -0.6 .
1 27 PRO 5 30 32 19 59.4 0.3 .
1 28 VAL 5 45 36 22 61.1 0.4 .
1 29 PRO 5 22 21 14 66.7 0.7 .
1 30 ASP 4 24 22 15 68.2 0.8 .
1 31 VAL 5 56 58 31 53.4 -0.1 .
1 32 SER 4 30 40 22 55.0 -0.0 .
1 33 LEU 7 61 82 31 37.8 -1.0 >sigma
1 34 GLU 5 46 34 24 70.6 0.9 .
1 35 GLN 7 57 48 28 58.3 0.2 .
1 36 CYS 4 58 36 29 80.6 1.5 >sigma
1 37 ALA 3 50 28 22 78.6 1.4 >sigma
1 38 ALA 3 34 20 15 75.0 1.2 >sigma
1 39 GLN 7 66 41 30 73.2 1.1 >sigma
1 40 CYS 4 49 36 23 63.9 0.5 .
1 41 LYS 7 35 33 14 42.4 -0.8 .
1 42 ALA 3 20 17 11 64.7 0.6 .
1 43 VAL 5 38 39 19 48.7 -0.4 .
1 44 ASP 4 14 7 5 71.4 1.0 .
1 45 GLY 3 12 9 5 55.6 0.0 .
1 46 CYS 4 36 28 14 50.0 -0.3 .
1 47 THR 4 30 33 15 45.5 -0.6 .
1 48 HIS 6 61 35 22 62.9 0.5 .
1 49 PHE 7 48 54 28 51.9 -0.2 .
1 50 THR 4 43 38 25 65.8 0.6 .
1 51 TYR 6 53 66 31 47.0 -0.5 .
1 52 ASN 6 53 38 21 55.3 0.0 .
1 53 ASP 4 34 35 14 40.0 -0.9 .
1 54 ASP 4 28 14 7 50.0 -0.3 .
1 55 SER 4 30 21 11 52.4 -0.2 .
1 56 LYS 7 40 45 21 46.7 -0.5 .
1 57 MET 6 57 44 24 54.5 -0.0 .
1 58 CYS 4 47 35 26 74.3 1.1 >sigma
1 59 HIS 6 35 33 17 51.5 -0.2 .
1 60 VAL 5 63 54 32 59.3 0.2 .
1 61 LYS 7 64 62 35 56.5 0.1 .
1 62 GLU 5 38 34 21 61.8 0.4 .
1 63 GLY 3 16 15 6 40.0 -0.9 .
1 64 LYS 7 30 43 19 44.2 -0.6 .
1 65 PRO 5 49 37 27 73.0 1.1 >sigma
1 66 ASP 4 25 22 14 63.6 0.5 .
1 67 LEU 7 51 55 26 47.3 -0.5 .
1 68 TYR 6 44 41 24 58.5 0.2 .
1 69 ASP 4 9 14 3 21.4 -2.0 >sigma
1 70 LEU 7 54 50 33 66.0 0.6 .
1 71 THR 4 28 13 12 92.3 2.2 >sigma
1 72 GLY 3 23 18 12 66.7 0.7 .
1 73 GLY 3 39 29 20 69.0 0.8 .
1 74 LYS 7 48 79 24 30.4 -1.5 >sigma
1 75 THR 4 53 40 31 77.5 1.3 >sigma
1 76 ALA 3 44 32 18 56.3 0.1 .
1 77 SER 4 34 28 18 64.3 0.5 .
1 78 ARG 7 48 63 25 39.7 -0.9 .
1 79 SER 4 30 30 14 46.7 -0.5 .
1 80 CYS 4 18 20 8 40.0 -0.9 .
1 81 ASP 4 10 19 5 26.3 -1.7 >sigma
1 82 ARG 7 25 23 13 56.5 0.1 .
1 83 SER 4 16 15 10 66.7 0.7 .
1 84 CYS 4 19 25 12 48.0 -0.4 .
1 85 PHE 7 58 58 34 58.6 0.2 .
1 86 GLU 5 34 25 18 72.0 1.0 >sigma
1 87 GLN 7 20 18 8 44.4 -0.6 .
1 88 HIS 6 49 29 24 82.8 1.6 >sigma
1 89 VAL 5 59 57 34 59.6 0.3 .
1 90 SER 4 34 34 20 58.8 0.2 .
1 91 TYR 6 57 62 26 41.9 -0.8 .
1 92 GLU 5 23 22 9 40.9 -0.8 .
1 93 GLY 3 19 13 11 84.6 1.8 >sigma
1 94 ALA 3 49 40 31 77.5 1.3 >sigma
1 95 PRO 5 10 10 5 50.0 -0.3 .
1 96 ASP 4 19 22 10 45.5 -0.6 .
1 97 VAL 5 46 41 31 75.6 1.2 >sigma
1 98 MET 6 33 36 20 55.6 0.0 .
1 99 THR 4 13 7 4 57.1 0.1 .
1 100 ALA 3 24 19 10 52.6 -0.1 .
1 101 MET 6 43 41 21 51.2 -0.2 .
1 102 VAL 5 26 24 14 58.3 0.2 .
1 103 THR 4 33 33 18 54.5 -0.0 .
1 104 SER 4 12 20 6 30.0 -1.5 >sigma
1 105 GLN 7 33 44 16 36.4 -1.1 >sigma
1 106 SER 4 22 30 12 40.0 -0.9 .
1 107 ALA 3 40 36 20 55.6 0.0 .
1 108 ASP 4 44 29 21 72.4 1.0 >sigma
1 109 CYS 4 38 34 20 58.8 0.2 .
1 110 GLN 7 55 59 32 54.2 -0.1 .
1 111 ALA 3 50 40 27 67.5 0.7 .
1 112 ALA 3 51 34 25 73.5 1.1 >sigma
1 113 CYS 4 40 34 22 64.7 0.6 .
1 114 ALA 3 32 31 17 54.8 -0.0 .
1 115 ALA 3 23 29 12 41.4 -0.8 .
1 116 ASP 4 45 32 24 75.0 1.2 >sigma
1 117 PRO 5 18 12 10 83.3 1.7 >sigma
1 118 SER 4 18 11 10 90.9 2.1 >sigma
1 119 CYS 4 33 23 17 73.9 1.1 >sigma
1 120 GLU 5 30 31 20 64.5 0.6 .
1 121 ILE 6 48 62 36 58.1 0.2 .
1 122 PHE 7 39 65 27 41.5 -0.8 .
1 123 THR 4 47 38 30 78.9 1.4 >sigma
1 124 TYR 6 38 50 23 46.0 -0.5 .
1 125 ASN 6 56 40 25 62.5 0.4 .
1 126 GLU 5 35 27 17 63.0 0.5 .
1 127 HIS 6 22 20 10 50.0 -0.3 .
1 128 ASP 4 19 20 10 50.0 -0.3 .
1 129 GLN 7 30 21 13 61.9 0.4 .
1 130 LYS 7 57 44 21 47.7 -0.4 .
1 131 CYS 4 41 32 22 68.8 0.8 .
1 132 THR 4 27 27 11 40.7 -0.9 .
1 133 PHE 7 64 68 44 64.7 0.6 .
1 134 LYS 7 51 65 26 40.0 -0.9 .
1 135 GLY 3 26 21 13 61.9 0.4 .
1 136 ARG 7 16 17 8 47.1 -0.5 .
1 137 GLY 3 11 16 5 31.3 -1.4 >sigma
1 138 PHE 7 47 54 32 59.3 0.2 .
1 139 SER 4 23 19 13 68.4 0.8 .
1 140 ALA 3 22 14 9 64.3 0.5 .
1 141 PHE 7 47 36 24 66.7 0.7 .
1 142 LYS 7 41 43 19 44.2 -0.6 .
1 143 GLU 5 27 22 14 63.6 0.5 .
1 144 ARG 7 18 31 12 38.7 -1.0 .
1 145 GLY 3 19 13 9 69.2 0.8 .
1 146 VAL 5 48 42 27 64.3 0.5 .
1 147 LEU 7 30 11 10 90.9 2.1 >sigma
1 148 GLY 3 31 19 13 68.4 0.8 .
1 149 VAL 5 78 54 38 70.4 0.9 .
1 150 THR 4 49 43 25 58.1 0.2 .
1 151 SER 4 39 32 22 68.8 0.8 .
1 152 GLY 3 39 25 20 80.0 1.5 >sigma
1 153 PRO 5 15 30 12 40.0 -0.9 .
1 154 LYS 7 24 36 12 33.3 -1.3 >sigma
1 155 GLN 7 32 39 18 46.2 -0.5 .
1 156 PHE 7 71 70 44 62.9 0.5 .
1 157 CYS 4 29 26 15 57.7 0.2 .
1 158 ASP 4 15 19 9 47.4 -0.5 .
1 159 GLU 5 35 32 17 53.1 -0.1 .
1 160 GLY 3 20 15 7 46.7 -0.5 .
1 161 GLY 3 18 26 12 46.2 -0.5 .
stop_
save_
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