NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
485016 |
2jvv   |
15490 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2jvv
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 181
_NOE_completeness_stats.Total_atom_count 926
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 322
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 40.2
_NOE_completeness_stats.Constraint_unexpanded_count 481
_NOE_completeness_stats.Constraint_count 481
_NOE_completeness_stats.Constraint_exp_unfiltered_count 773
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 32
_NOE_completeness_stats.Constraint_intraresidue_count 19
_NOE_completeness_stats.Constraint_surplus_count 7
_NOE_completeness_stats.Constraint_observed_count 423
_NOE_completeness_stats.Constraint_expected_count 767
_NOE_completeness_stats.Constraint_matched_count 308
_NOE_completeness_stats.Constraint_unmatched_count 115
_NOE_completeness_stats.Constraint_exp_nonobs_count 459
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 131 227 108 47.6 0.9 .
medium-range 63 123 38 30.9 -0.9 .
long-range 229 417 162 38.8 -0.0 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 9 2 0 0 1 0 1 0 0 0 . 0 22.2 22.2
shell 2.00 2.50 102 71 0 2 23 0 30 0 16 0 . 0 69.6 65.8
shell 2.50 3.00 140 83 0 1 12 0 32 0 38 0 . 0 59.3 62.2
shell 3.00 3.50 157 56 0 0 1 0 19 0 36 0 . 0 35.7 52.0
shell 3.50 4.00 359 96 0 0 0 0 29 0 65 0 . 2 26.7 40.2
shell 4.00 4.50 544 64 0 0 0 0 2 0 55 0 . 7 11.8 28.4
shell 4.50 5.00 748 42 0 0 0 0 0 0 39 0 . 3 5.6 20.1
shell 5.00 5.50 810 6 0 0 0 0 0 0 1 0 . 5 0.7 14.6
shell 5.50 6.00 944 1 0 0 0 0 0 0 0 0 . 1 0.1 11.0
shell 6.00 6.50 1066 1 0 0 0 0 0 0 0 0 . 1 0.1 8.6
shell 6.50 7.00 1250 1 0 0 0 0 0 0 0 0 . 1 0.1 6.9
shell 7.00 7.50 1204 0 0 0 0 0 0 0 0 0 . 0 0.0 5.8
shell 7.50 8.00 1261 0 0 0 0 0 0 0 0 0 . 0 0.0 4.9
shell 8.00 8.50 1385 0 0 0 0 0 0 0 0 0 . 0 0.0 4.2
shell 8.50 9.00 1473 0 0 0 0 0 0 0 0 0 . 0 0.0 3.7
sums . . 11452 423 0 3 37 0 113 0 250 0 . 20 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 123 ARG 7 1 5 0 0.0 -2.3 >sigma
1 124 PRO 5 4 9 2 22.2 -1.1 >sigma
1 125 LYS 7 8 22 6 27.3 -0.8 .
1 126 THR 4 9 13 5 38.5 -0.2 .
1 127 LEU 7 5 16 3 18.8 -1.3 >sigma
1 128 PHE 7 35 57 26 45.6 0.2 .
1 129 GLU 5 7 13 5 38.5 -0.2 .
1 130 PRO 5 7 14 5 35.7 -0.3 .
1 131 GLY 3 6 11 5 45.5 0.2 .
1 132 GLU 5 17 21 13 61.9 1.1 >sigma
1 133 MET 6 22 29 16 55.2 0.7 .
1 134 VAL 5 29 54 20 37.0 -0.3 .
1 135 ARG 7 14 25 11 44.0 0.1 .
1 136 VAL 5 36 53 26 49.1 0.4 .
1 137 ASN 6 13 15 10 66.7 1.4 >sigma
1 138 ASP 4 11 16 8 50.0 0.4 .
1 139 GLY 3 7 9 2 22.2 -1.1 >sigma
1 140 PRO 5 0 12 0 0.0 -2.3 >sigma
1 141 PHE 7 30 56 23 41.1 -0.0 .
1 142 ALA 3 22 21 15 71.4 1.6 >sigma
1 143 ASP 4 9 9 7 77.8 2.0 >sigma
1 144 PHE 7 24 27 13 48.1 0.3 .
1 145 ASN 6 12 12 8 66.7 1.4 >sigma
1 146 GLY 3 19 16 11 68.8 1.5 >sigma
1 147 VAL 5 25 32 18 56.3 0.8 .
1 148 VAL 5 28 56 23 41.1 -0.0 .
1 149 GLU 5 12 24 10 41.7 -0.0 .
1 150 GLU 5 15 31 11 35.5 -0.3 .
1 151 VAL 5 15 40 13 32.5 -0.5 .
1 152 ASP 4 10 26 7 26.9 -0.8 .
1 153 TYR 6 16 17 11 64.7 1.2 >sigma
1 154 GLU 5 9 16 9 56.3 0.8 .
1 155 LYS 7 8 23 6 26.1 -0.9 .
1 156 SER 4 8 13 7 53.8 0.7 .
1 157 ARG 7 11 27 9 33.3 -0.5 .
1 158 LEU 7 36 60 21 35.0 -0.4 .
1 159 LYS 7 12 36 9 25.0 -0.9 .
1 160 VAL 5 19 52 16 30.8 -0.6 .
1 161 SER 4 9 25 8 32.0 -0.5 .
1 162 VAL 5 27 47 20 42.6 0.0 .
1 163 SER 4 11 8 6 75.0 1.8 >sigma
1 164 ILE 6 19 33 14 42.4 0.0 .
1 165 PHE 7 4 12 3 25.0 -0.9 .
1 166 GLY 3 4 9 4 44.4 0.1 .
1 167 ARG 7 6 8 6 75.0 1.8 >sigma
1 168 ALA 3 9 11 8 72.7 1.7 >sigma
1 169 THR 4 16 26 14 53.8 0.7 .
1 170 PRO 5 0 16 0 0.0 -2.3 >sigma
1 171 VAL 5 18 37 17 45.9 0.2 .
1 172 GLU 5 9 22 8 36.4 -0.3 .
1 173 LEU 7 10 46 8 17.4 -1.3 >sigma
1 174 ASP 4 12 26 9 34.6 -0.4 .
1 175 PHE 7 29 39 18 46.2 0.2 .
1 176 SER 4 10 10 5 50.0 0.4 .
1 177 GLN 7 8 35 6 17.1 -1.3 >sigma
1 178 VAL 5 26 56 16 28.6 -0.7 .
1 179 GLU 5 18 27 14 51.9 0.5 .
1 180 LYS 7 21 39 15 38.5 -0.2 .
1 181 ALA 3 9 14 7 50.0 0.4 .
stop_
save_
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