NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
475023 |
2kg0   |
16193 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2kg0
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 132
_NOE_completeness_stats.Total_atom_count 1626
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 554
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 55.4
_NOE_completeness_stats.Constraint_unexpanded_count 2263
_NOE_completeness_stats.Constraint_count 2263
_NOE_completeness_stats.Constraint_exp_unfiltered_count 1674
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 46
_NOE_completeness_stats.Constraint_intraresidue_count 355
_NOE_completeness_stats.Constraint_surplus_count 127
_NOE_completeness_stats.Constraint_observed_count 1735
_NOE_completeness_stats.Constraint_expected_count 1570
_NOE_completeness_stats.Constraint_matched_count 869
_NOE_completeness_stats.Constraint_unmatched_count 866
_NOE_completeness_stats.Constraint_exp_nonobs_count 701
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 555 433 247 57.0 0.5 .
medium-range 341 322 174 54.0 0.3 .
long-range 782 748 429 57.4 0.5 .
intermolecular 57 67 19 28.4 -1.4 >sigma
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 29 23 0 0 0 1 3 3 4 9 . 3 79.3 79.3
shell 2.00 2.50 194 147 0 0 1 22 13 26 31 26 . 28 75.8 76.2
shell 2.50 3.00 275 173 0 0 1 10 22 32 43 30 . 35 62.9 68.9
shell 3.00 3.50 421 219 0 0 0 3 6 37 41 43 . 89 52.0 61.2
shell 3.50 4.00 651 307 0 0 0 0 10 34 64 68 . 131 47.2 55.4
shell 4.00 4.50 997 343 0 0 0 0 2 24 62 86 . 169 34.4 47.2
shell 4.50 5.00 1380 298 0 0 0 0 0 6 42 68 . 182 21.6 38.3
shell 5.00 5.50 1654 176 0 0 0 0 0 0 4 49 . 123 10.6 30.1
shell 5.50 6.00 1712 48 0 0 0 0 0 0 0 4 . 44 2.8 23.7
shell 6.00 6.50 1993 1 0 0 0 0 0 0 0 0 . 1 0.1 18.6
shell 6.50 7.00 2275 0 0 0 0 0 0 0 0 0 . 0 0.0 15.0
shell 7.00 7.50 2373 0 0 0 0 0 0 0 0 0 . 0 0.0 12.4
shell 7.50 8.00 2564 0 0 0 0 0 0 0 0 0 . 0 0.0 10.5
shell 8.00 8.50 2845 0 0 0 0 0 0 0 0 0 . 0 0.0 9.0
shell 8.50 9.00 3039 0 0 0 0 0 0 0 0 0 . 0 0.0 7.7
sums . . 22402 1735 0 0 2 36 56 162 291 383 . 805 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 35 ASN 6 0 3 0 0.0 -2.6 >sigma
1 36 SER 4 0 6 0 0.0 -2.6 >sigma
1 37 ALA 3 0 6 0 0.0 -2.6 >sigma
1 38 ASP 4 0 6 0 0.0 -2.6 >sigma
1 39 SER 4 0 7 0 0.0 -2.6 >sigma
1 40 ALA 3 16 19 6 31.6 -1.0 .
1 41 ASN 6 17 10 6 60.0 0.4 .
1 42 ASP 4 21 25 11 44.0 -0.4 .
1 43 GLY 3 20 31 11 35.5 -0.8 .
1 44 PHE 7 64 57 34 59.6 0.4 .
1 45 VAL 5 55 49 27 55.1 0.2 .
1 46 ARG 7 46 47 27 57.4 0.3 .
1 47 LEU 7 55 57 29 50.9 -0.0 .
1 48 ARG 7 33 50 18 36.0 -0.8 .
1 49 GLY 3 10 25 6 24.0 -1.4 >sigma
1 50 LEU 7 62 55 30 54.5 0.2 .
1 51 PRO 5 47 41 28 68.3 0.9 .
1 52 PHE 7 34 25 13 52.0 0.0 .
1 53 GLY 3 9 12 4 33.3 -0.9 .
1 54 CYS 4 41 29 22 75.9 1.2 >sigma
1 55 THR 4 23 29 13 44.8 -0.3 .
1 56 LYS 7 44 46 26 56.5 0.3 .
1 57 GLU 5 24 20 13 65.0 0.7 .
1 58 GLU 5 34 32 19 59.4 0.4 .
1 59 ILE 6 64 67 31 46.3 -0.3 .
1 60 VAL 5 46 44 24 54.5 0.2 .
1 61 GLN 7 31 27 14 51.9 0.0 .
1 62 PHE 7 75 65 39 60.0 0.4 .
1 63 PHE 7 83 73 47 64.4 0.7 .
1 64 SER 4 24 13 6 46.2 -0.3 .
1 65 GLY 3 8 8 4 50.0 -0.1 .
1 66 LEU 7 63 52 35 67.3 0.8 .
1 67 GLU 5 26 22 15 68.2 0.8 .
1 68 ILE 6 59 58 35 60.3 0.5 .
1 69 VAL 5 57 26 23 88.5 1.9 >sigma
1 70 PRO 5 13 8 5 62.5 0.6 .
1 71 ASN 6 12 6 1 16.7 -1.7 >sigma
1 72 GLY 3 23 19 9 47.4 -0.2 .
1 73 ILE 6 64 66 33 50.0 -0.1 .
1 74 THR 4 55 31 27 87.1 1.8 >sigma
1 75 LEU 7 40 46 23 50.0 -0.1 .
1 76 PRO 5 28 29 18 62.1 0.5 .
1 77 VAL 5 41 28 21 75.0 1.2 >sigma
1 78 ASP 4 35 22 14 63.6 0.6 .
1 79 PRO 5 16 9 8 88.9 1.9 >sigma
1 80 GLU 5 22 19 10 52.6 0.1 .
1 81 GLY 3 17 14 6 42.9 -0.4 .
1 82 LYS 7 34 31 15 48.4 -0.1 .
1 83 ILE 6 70 49 35 71.4 1.0 >sigma
1 84 THR 4 33 20 15 75.0 1.2 >sigma
1 85 GLY 3 22 22 9 40.9 -0.5 .
1 86 GLU 5 20 32 11 34.4 -0.8 .
1 87 ALA 3 42 37 25 67.6 0.8 .
1 88 PHE 7 65 56 36 64.3 0.7 .
1 89 VAL 5 63 56 34 60.7 0.5 .
1 90 GLN 7 55 44 28 63.6 0.6 .
1 91 PHE 7 103 80 52 65.0 0.7 .
1 92 ALA 3 46 24 18 75.0 1.2 >sigma
1 93 SER 4 19 15 8 53.3 0.1 .
1 94 GLN 7 36 36 21 58.3 0.4 .
1 95 GLU 5 17 19 10 52.6 0.1 .
1 96 LEU 7 66 65 33 50.8 -0.0 .
1 97 ALA 3 49 42 31 73.8 1.1 >sigma
1 98 GLU 5 28 25 18 72.0 1.0 >sigma
1 99 LYS 7 33 34 19 55.9 0.2 .
1 100 ALA 3 40 39 24 61.5 0.5 .
1 101 LEU 7 58 36 27 75.0 1.2 >sigma
1 102 GLY 3 17 11 5 45.5 -0.3 .
1 103 LYS 7 54 60 30 50.0 -0.1 .
1 104 HIS 6 45 31 20 64.5 0.7 .
1 105 LYS 7 32 26 13 50.0 -0.1 .
1 106 GLU 5 34 27 16 59.3 0.4 .
1 107 ARG 7 28 26 14 53.8 0.1 .
1 108 ILE 6 77 53 42 79.2 1.4 >sigma
1 109 GLY 3 9 12 5 41.7 -0.5 .
1 110 HIS 6 9 15 3 20.0 -1.6 >sigma
1 111 ARG 7 31 32 10 31.3 -1.0 >sigma
1 112 TYR 6 37 37 16 43.2 -0.4 .
1 113 ILE 6 69 66 42 63.6 0.6 .
1 114 GLU 5 24 44 15 34.1 -0.9 .
1 115 VAL 5 56 48 30 62.5 0.6 .
1 116 PHE 7 50 52 26 50.0 -0.1 .
1 117 LYS 7 45 34 21 61.8 0.5 .
1 118 SER 4 36 24 19 79.2 1.4 >sigma
1 119 SER 4 38 21 18 85.7 1.7 >sigma
1 120 GLN 7 44 45 25 55.6 0.2 .
1 121 GLU 5 20 22 13 59.1 0.4 .
1 122 GLU 5 28 22 10 45.5 -0.3 .
1 123 VAL 5 65 48 28 58.3 0.4 .
1 124 ARG 7 21 32 13 40.6 -0.5 .
1 125 SER 4 11 12 7 58.3 0.4 .
1 126 TYR 6 11 18 4 22.2 -1.5 >sigma
2 1 A 10 15 13 5 38.5 -0.6 .
2 2 G 10 17 19 5 26.3 -1.3 >sigma
2 3 G 10 31 34 9 26.5 -1.2 >sigma
2 4 G 10 15 21 2 9.5 -2.1 >sigma
2 5 A 10 25 20 6 30.0 -1.1 >sigma
2 6 U 8 20 14 6 42.9 -0.4 .
stop_
save_
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