NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id cing stage position program type
13150 1u6p cing 1-original 27 DYANA/DIANA dihedral angle



#----------------------------------------------------------------
# Angle Constraints for RNA Phosphodiester Linkages
# SLBm
# MFS 
# Note:  alpha, beta, gamma, zeta define torsion angles
#        associated with the 5' phosphodiester linkage
#        and epsi is associated with the 3'linkage.
#----------------------------------------------------------------

#RGUA 276 
#276 RGUA  ZETA     -86.0   -56.0 1.00E+00
276 RGUA  ALPHA  -115.0   -15.0  1.00E+00
276 RGUA  BETA    125.0   225.0  1.00E+00
276 RGUA  GAMMA    20.0   120.0  1.00E+00
276 RGUA  EPSI   -168.0  -138.0  1.00E+00

#RGUA 277
277 RGUA  ALPHA  -115.0   -15.0  1.00E+00
277 RGUA  BETA   125.0   225.0  1.00E+00
277 RGUA  GAMMA    20.0   120.0  1.00E+00
277 RGUA  EPSI  -168.0  -138.0  1.00E+00
277 RGUA  ZETA   -86.0   -56.0  1.00E+00

#RCYT 278
278 RCYT  ALPHA    -115.0   -15.0  1.00E+00
278 RCYT  BETA     125.0   225.0  1.00E+00
278 RCYT  GAMMA     20.0   120.0   1.00E+00
278 RCYT  EPSI    -168.0  -138.0  1.00E+00
278 RCYT  ZETA     -86.0   -56.0  1.00E+00

#RGUA 279
279 RGUA  ALPHA    -115.0   -15.0  1.00E+00
279 RGUA  BETA     125.0   225.0  1.00E+00
279 RGUA  GAMMA      20.0   120.0  1.00E+00
279 RGUA  EPSI    -168.0  -138.0  1.00E+00
279 RGUA  ZETA     -86.0   -56.0  1.00E+00

#RGUA 280
280 RGUA  ALPHA   -115.0   -15.0  1.00E+00
280 RGUA  BETA    125.0   225.0  1.00E+00
280 RGUA  GAMMA     20.0   120.0  1.00E+00
280 RGUA  EPSI   -168.0  -138.0  1.00E+00
280 RGUA  ZETA    -86.0   -56.0  1.00E+00

#URA 281
281 URA   ALPHA   -115.0   -15.0  1.00E+00
281 URA   BETA    125.0   225.0  1.00E+00
281 URA   GAMMA    20.0   120.0   1.00E+00
281 URA   EPSI   -168.0  -138.0  1.00E+00
281 URA   ZETA    -86.0   -56.0  1.00E+00

#RADE 282
282 RAD+  ALPHA   -115.0   -15.0  1.00E+00
282 RAD+  BETA    125.0   225.0  1.00E+00
282 RAD+  GAMMA     20.0   120.0  1.00E+00
282 RAD+  EPSI   -168.0  -138.0  1.00E+00
282 RAD+  ZETA    -86.0   -56.0  1.00E+00

#RCYT  283
283 RCYT  ALPHA   -115.0   -15.0  1.00E+00
283 RCYT  BETA    125.0   225.0  1.00E+00
283 RCYT  GAMMA    20.0   120.0   1.00E+00
283 RCYT  EPSI   -168.0  -138.0  1.00E+00
283 RCYT  ZETA    -86.0   -56.0  1.00E+00

#URA 284
284 URA   ALPHA   -115.0   -15.0  1.00E+00
284 URA   BETA    125.0   225.0  1.00E+00
284 URA   GAMMA    20.0   120.0   1.00E+00
284 URA   EPSI   -168.0  -138.0  1.00E+00
284 URA   ZETA    -86.0   -56.0  1.00E+00

#RADE 285
285 RADE  ALPHA   -115.0   -15.0  1.00E+00
285 RADE  BETA   125.0   225.0   1.00E+00
285 RADE  GAMMA     20.0   120.0  1.00E+00
285 RADE  EPSI   -168.0  -138.0  1.00E+00
285 RADE  ZETA   -86.0   -56.0   1.00E+00

#RGUA 286
286 RGUA  ALPHA   -115.0   -15.0  1.00E+00
286 RGUA  BETA    125.0   225.0  1.00E+00
286 RGUA  GAMMA     20.0   120.0  1.00E+00
286 RGUA  EPSI   -168.0  -138.0  1.00E+00
286 RGUA  ZETA    -86.0   -56.0  1.00E+00

#URA 287
287 URA   ALPHA   -115.0   -15.0  1.00E+00
287 URA   BETA    125.0   225.0  1.00E+00
287 URA   GAMMA     20.0   120.0  1.00E+00
287 URA   EPSI   -168.0  -138.0  1.00E+00
287 URA   ZETA    -86.0   -56.0  1.00E+00

#URA 288
288 URA   ALPHA   -115.0   -15.0  1.00E+00
288 URA   BETA    125.0   225.0  1.00E+00
288 URA   GAMMA     20.0   120.0  1.00E+00
#288 URA   EPSI   -168.0  -138.0  1.00E+00
288 URA   ZETA    -86.0   -56.0  1.00E+00

#----- SLBm Tetraloop ------
#RGUA 289
 289 RGUA  ALPHA   -115.0   -15.0  1.00E+00
 289 RGUA  BETA    125.0   225.0  1.00E+00
 289 RGUA  GAMMA    20.0   120.0   1.00E+00
#289 RGUA  EPSI   -168.0  -138.0  1.00E+00
 289 RGUA  ZETA    -86.0   -56.0  1.00E+00

#RADE 290

#RGUA 291
#291 RGUA  ALPHA   -115.0   -15.0  1.00E+00
#291 RGUA  BETA    125.0   225.0  1.00E+00
#291 RGUA  GAMMA    20.0   120.0   1.00E+00
#291 RGUA  EPSI   -168.0  -138.0  1.00E+00
#291 RGUA  ZETA    -86.0   -56.0  1.00E+00

#RADE 292
#292 RADE  ALPHA   -115.0   -15.0  1.00E+00
#292 RADE  BETA    125.0   225.0  1.00E+00
#292 RADE  GAMMA    20.0   120.0   1.00E+00
#292 RADE  EPSI   -168.0  -138.0  1.00E+00
#292 RADE  ZETA    -86.0   -56.0  1.00E+00

#RADE 293
#293 RADE  ALPHA   -115.0   -15.0  1.00E+00
#293 RADE  BETA   125.0   225.0   1.00E+00
#293 RADE  GAMMA    20.0   120.0   1.00E+00
293 RADE  EPSI   -168.0  -138.0  1.00E+00
#293 RADE  ZETA    -86.0   -56.0  1.00E+00

#RADE 294
294 RADE  ALPHA  -115.0   -15.0   1.00E+00
294 RADE  BETA   125.0   225.0   1.00E+00
294 RADE  GAMMA   20.0   120.0    1.00E+00
294 RADE  EPSI   -168.0  -138.0  1.00E+00
294 RADE  ZETA    -86.0   -56.0  1.00E+00

#RCYT 295
295 RCYT  ALPHA   -115.0   -15.0  1.00E+00
295 RCYT  BETA   125.0   225.0   1.00E+00
295 RCYT  GAMMA    20.0   120.0   1.00E+00
295 RCYT  EPSI   -168.0  -138.0  1.00E+00
295 RCYT  ZETA    -86.0   -56.0  1.00E+00

#URA 296
296 URA   ALPHA   -115.0   -15.0  1.00E+00
296 URA   BETA    125.0   225.0  1.00E+00
296 URA   GAMMA    20.0   120.0   1.00E+00
296 URA   EPSI   -168.0  -138.0  1.00E+00
296 URA   ZETA    -86.0   -56.0  1.00E+00

#RADE 297
297 RADE  ALPHA   -115.0   -15.0  1.00E+00
297 RADE  BETA   125.0   225.0   1.00E+00
297 RADE  GAMMA    20.0   120.0   1.00E+00
297 RADE  EPSI   -168.0  -138.0  1.00E+00
297 RADE  ZETA    -86.0   -56.0  1.00E+00

#RGUA 298
298 RGUA  ALPHA   -115.0   -15.0  1.00E+00
298 RGUA  BETA    125.0   225.0  1.00E+00
298 RGUA  GAMMA    20.0   120.0   1.00E+00
298 RGUA  EPSI   -168.0  -138.0  1.00E+00
298 RGUA  ZETA    -86.0   -56.0  1.00E+00

#RCYT 299
299 RCYT  ALPHA   -115.0   -15.0  1.00E+00
299 RCYT  BETA    125.0   225.0  1.00E+00
299 RCYT  GAMMA    20.0   120.0   1.00E+00
299 RCYT  EPSI   -168.0  -138.0  1.00E+00
299 RCYT  ZETA    -86.0   -56.0  1.00E+00

#URA 300
300 URA   ALPHA   -115.0   -15.0  1.00E+00
300 URA   BETA    125.0   225.0  1.00E+00
300 URA   GAMMA    20.0   120.0   1.00E+00
300 URA   EPSI   -168.0  -138.0  1.00E+00
300 URA   ZETA    -86.0   -56.0  1.00E+00

#RCYT 301 
301 RCYT  ALPHA   -115.0   -15.0  1.00E+00
301 RCYT  BETA   125.0   225.0   1.00E+00
301 RCYT  GAMMA    20.0   120.0   1.00E+00
301 RCYT  EPSI   -168.0  -138.0  1.00E+00
301 RCYT  ZETA    -86.0   -56.0  1.00E+00

#URA 302 
302 URA   ALPHA   -115.0   -15.0  1.00E+00
302 URA   BETA   125.0   225.0   1.00E+00
302 URA   GAMMA    20.0   120.0   1.00E+00
302 URA   EPSI   -168.0  -138.0  1.00E+00
302 URA   ZETA    -86.0   -56.0  1.00E+00

#GUA 303
303 RGUA  ALPHA   -115.0   -15.0  1.00E+00
303 RGUA  BETA    125.0   225.0  1.00E+00
303 RGUA  GAMMA     20.0   120.0  1.00E+00
303 RGUA  EPSI  -168.0  -138.0   1.00E+00
303 RGUA  ZETA    -86.0   -56.0  1.00E+00

#URA 304 
302 URA   ALPHA   -115.0   -15.0  1.00E+00
302 URA   BETA   125.0   225.0   1.00E+00
302 URA   GAMMA    20.0   120.0   1.00E+00
302 URA   EPSI   -168.0  -138.0  1.00E+00
302 URA   ZETA    -86.0   -56.0  1.00E+00

#RADE 305 
297 RADE  ALPHA   -115.0   -15.0  1.00E+00
297 RADE  BETA   125.0   225.0   1.00E+00
297 RADE  GAMMA    20.0   120.0   1.00E+00
#297 RADE  EPSI   -168.0  -138.0  1.00E+00
297 RADE  ZETA    -86.0   -56.0  1.00E+00
#########################################
# slCm2
#----------------------------------------------------------------
#   Angle Constraints for RNA Phosphodiester Linkages
#   slCmGUGA- modified by adey1 Aug28,02
#   torsion angle for A-RNA with +/- 0.1 error
#   from Saenger "Priciples of Nucleic Acid Structure", p260
# Note:  alpha, beta, gamma, zeta define torsion angles
#        associated with the 5' phosphodiester linkage
#        and epsi is associated with the 3'linkage.
#----------------------------------------------------------------

#G310  RGUA
 310   RGUA  ALPHA  -118.0   -18.0 1.00E+00
 310   RGUA  BETA   128.0   228.0  1.00E+00
 310   RGUA  GAMMA   4.0   104.0  1.00E+00
 310   RGUA  EPSI   -203.0   -103.0  1.00E+00
#310   RGUA  ZETA   -121.0   -1.0  1.00E+00

#C311  RCYT
 311   RCYT  ALPHA  -118.0   -18.0 1.00E+00
 311   RCYT  BETA   128.0   228.0  1.00E+00
 311   RCYT  GAMMA   4.0   104.0  1.00E+00
 311   RCYT  EPSI   -203.0   -103.0  1.00E+00
 311   RCYT  ZETA   -121.0   -1.0  1.00E+00

#G312  RGUA
 312   RGUA  ZETA   -121.0   -1.0  1.00E+00
 312   RGUA  ALPHA  -118.0   -18.0 1.00E+00
 312   RGUA  BETA   128.0   228.0  1.00E+00
 312   RGUA  GAMMA   4.0   104.0  1.00E+00
 312   RGUA  EPSI   -203.0   -103.0  1.00E+00
 
#G313  RGUA
 313   RGUA  ZETA   -121.0   -1.0  1.00E+00
 313   RGUA  ALPHA  -118.0   -18.0 1.00E+00
 313   RGUA  BETA   128.0   228.0  1.00E+00
 313   RGUA  GAMMA   4.0   104.0  1.00E+00
 313   RGUA  EPSI   -203.0   -103.0  1.00E+00
 
#RADE 314
 314   RADE  ZETA   -121.0   -1.0  1.00E+00
 314   RADE  ALPHA  -118.0   -18.0 1.00E+00
 314   RADE  BETA   128.0   228.0  1.00E+00
 314   RADE  GAMMA   4.0   104.0  1.00E+00
#314   RADE  EPSI   -203.0   -103.0  1.00E+00

#RCYT 315
#315   RCYT  ZETA   -121.0   -1.0  1.00E+00
#315   RCYT  ALPHA  -118.0   -18.0 1.00E+00
#315   RCYT  BETA   128.0   228.0  1.00E+00
#315   RCYT  GAMMA   4.0   104.0  1.00E+00
#315   RCYT  EPSI   -203.0   -103.0  1.00E+00

#C316  RCYT
#316   RCYT  ZETA   -121.0   -1.0  1.00E+00
#316   RCYT  ALPHA  -118.0   -18.0 1.00E+00
#316   RCYT  BETA   128.0   228.0  1.00E+00
#316   RCYT  GAMMA   4.0   104.0  1.00E+00
 316   RCYT  EPSI   -203.0   -103.0  1.00E+00
 
#C317  RCYT
 317   RCYT  ALPHA  -118.0   -18.0 1.00E+00
 317   RCYT  BETA   128.0   228.0  1.00E+00
 317   RCYT  GAMMA   4.0   104.0  1.00E+00
 317   RCYT  EPSI   -203.0   -103.0  1.00E+00
 317   RCYT  ZETA   -121.0   -1.0  1.00E+00
 
#G318 RGUA
 318   RGUA  ALPHA  -118.0   -18.0 1.00E+00
 318   RGUA  BETA   128.0   228.0  1.00E+00
 318   RGUA  GAMMA   4.0   104.0  1.00E+00
#318   RCYT  EPSI   -203.0   -103.0  1.00E+00
 318   RGUA  ZETA   -121.0   -1.0  1.00E+00 
 
#URA 319

#RGUA 320
320 RGUA  EPSI   -203.0   -103.0  1.00E+00

#G321 RGUA
 321  RGUA  ALPHA  -118.0   -18.0 1.00E+00
 321  RGUA  BETA   128.0   228.0  1.00E+00
 321  RGUA  GAMMA   4.0   104.0  1.00E+00
 321  RGUA  EPSI   -203.0   -103.0  1.00E+00
 321  RGUA  ZETA   -121.0   -1.0  1.00E+00

#U322 URA 
 322  URA   ALPHA  -118.0   -18.0 1.00E+00
 322  URA   BETA   128.0   228.0  1.00E+00
 322  URA   GAMMA   4.0   104.0  1.00E+00
 322  URA   EPSI   -203.0   -103.0  1.00E+00
 322  URA   ZETA   -121.0   -1.0  1.00E+00
 
#G323 RGUA
 323  RGUA  ALPHA  -118.0   -18.0 1.00E+00
 323  RGUA  BETA   128.0   228.0  1.00E+00
 323  RGUA  GAMMA   4.0   104.0  1.00E+00
 #323  RGUA  EPSI   -203.0   -103.0  1.00E+00
 323  RGUA  ZETA   -121.0   -1.0  1.00E+00
 
#G324 RGUA
#324 RGUA  ALPHA  -118.0   -18.0 1.00E+00
#324  RGUA  BETA   128.0   228.0  1.00E+00
#324  RGUA  GAMMA   4.0   104.0  1.00E+00
#324  RGUA  EPSI   -203.0   -103.0  1.00E+00
#324  RGUA  ZETA   -121.0   -1.0  1.00E+00

#A325  RADE
 325   RADE  ALPHA  -118.0   -18.0 1.00E+00
 325   RADE  BETA   128.0   228.0  1.00E+00
 325   RADE  GAMMA   4.0   104.0  1.00E+00
 325   RADE  EPSI   -203.0   -103.0  1.00E+00
 325   RADE  ZETA   -121.0   -1.0  1.00E+00
 
#A326  RADE
 326   RADE  ALPHA  -118.0   -18.0 1.00E+00
 326   RADE  BETA   128.0   228.0  1.00E+00
 326   RADE  GAMMA   4.0   104.0  1.00E+00
 326   RADE  EPSI   -203.0   -103.0  1.00E+00
 326   RADE  ZETA   -121.0   -1.0  1.00E+00
 
#C327  RCYT
 327   RCYT  ALPHA  -118.0   -18.0 1.00E+00
 327   RCYT  BETA   128.0   228.0  1.00E+00
 327   RCYT  GAMMA   4.0   104.0  1.00E+00
 327   RCYT  EPSI   -203.0   -103.0  1.00E+00
 327   RCYT  ZETA   -121.0   -1.0  1.00E+00
 
#U328 URA 
 328  URA   ALPHA  -118.0   -18.0 1.00E+00
 328  URA   BETA   128.0   228.0  1.00E+00
 328  URA   GAMMA   4.0   104.0  1.00E+00
 328  URA   EPSI   -203.0   -103.0  1.00E+00
 328  URA   ZETA   -121.0   -1.0  1.00E+00
 
####### slCm GNRA Tetraloop ###################
#RGUA 329
 328  URA   ALPHA  -118.0   -18.0 1.00E+00
 328  URA   BETA   128.0   228.0  1.00E+00
 328  URA   GAMMA   4.0   104.0  1.00E+00
#328  URA   EPSI   -203.0   -103.0  1.00E+00
 328  URA   ZETA   -121.0   -1.0  1.00E+00

#URA 330
#RGUA 331
#RADE 332

##############################################
#A333  RADE
#333   RADE  ALPHA  -118.0   -18.0 1.00E+00
#333   RADE  BETA   128.0   228.0  1.00E+00
#333   RADE  GAMMA   4.0   104.0  1.00E+00
 333   RADE  EPSI   -203.0   -103.0  1.00E+00
#333   RADE  ZETA   -121.0   -1.0  1.00E+00
 
#G334 RGUA
 334 RGUA  ALPHA  -118.0   -18.0 1.00E+00
 334  RGUA  BETA   128.0   228.0  1.00E+00
 334  RGUA  GAMMA   4.0   104.0  1.00E+00
 334  RGUA  EPSI   -203.0   -103.0  1.00E+00
 334  RGUA  ZETA   -121.0   -1.0  1.00E+00

#U335 URA 
 335  URA   ALPHA  -118.0   -18.0 1.00E+00
 335  URA   BETA   128.0   228.0  1.00E+00
 335  URA   GAMMA   4.0   104.0  1.00E+00
 335  URA   EPSI   -203.0   -103.0  1.00E+00
 335  URA   ZETA   -121.0   -1.0  1.00E+00

#U336 URA 
 336  URA   ALPHA  -118.0   -18.0 1.00E+00
 336  URA   BETA   128.0   228.0  1.00E+00
 336  URA   GAMMA   4.0   104.0  1.00E+00
 336  URA   EPSI   -203.0   -103.0  1.00E+00
 336  URA   ZETA   -121.0   -1.0  1.00E+00
 
#C337  RCYT
 337   RCYT  ALPHA  -118.0   -18.0 1.00E+00
 337   RCYT  BETA   128.0   228.0  1.00E+00
 337   RCYT  GAMMA   4.0   104.0  1.00E+00
 337   RCYT  EPSI   -203.0   -103.0  1.00E+00  #added 9/10/02
 337   RCYT  ZETA   -121.0   -1.0  1.00E+00

#RGUA 338   #added 9/10/02
 338 RGUA  ALPHA  -118.0   -18.0 1.00E+00   
 338  RGUA  BETA   128.0   228.0  1.00E+00
 338  RGUA  GAMMA   4.0   104.0  1.00E+00
#338  RGUA  EPSI   -203.0   -103.0  1.00E+00
 338  RGUA  ZETA   -121.0   -1.0  1.00E+00

#RGUA 339

#RADE 340
#RADE 341

#C342  RCYT
 342   RCYT  ALPHA  -118.0   -18.0 1.00E+00
 342   RCYT  BETA   128.0   228.0  1.00E+00
 342   RCYT  GAMMA   4.0   104.0  1.00E+00
 342   RCYT  EPSI   -203.0   -103.0  1.00E+00
 342   RCYT  ZETA   -121.0   -1.0  1.00E+00
 
#A343  RADE
 343   RADE  ALPHA  -118.0   -18.0 1.00E+00
 343   RADE  BETA   128.0   228.0  1.00E+00
 343   RADE  GAMMA   4.0   104.0  1.00E+00
 343   RADE  EPSI   -203.0   -103.0  1.00E+00
 343   RADE  ZETA   -121.0   -1.0  1.00E+00
 
#C344  RCYT
 344   RCYT  ALPHA  -118.0   -18.0 1.00E+00
 344   RCYT  BETA   128.0   228.0  1.00E+00
 344   RCYT  GAMMA   4.0   104.0  1.00E+00
 344   RCYT  EPSI   -203.0   -103.0  1.00E+00
 344   RCYT  ZETA   -121.0   -1.0  1.00E+00
 
#C345  RCYT
 345   RCYT  ALPHA  -118.0   -18.0 1.00E+00
 345   RCYT  BETA   128.0   228.0  1.00E+00
 345   RCYT  GAMMA   4.0   104.0  1.00E+00
 345   RCYT  EPSI   -203.0   -103.0  1.00E+00
 345   RCYT  ZETA   -121.0   -1.0  1.00E+00

#C346  RCYT
 346   RCYT  ALPHA  -118.0   -18.0 1.00E+00
 346   RCYT  BETA   128.0   228.0  1.00E+00
 346   RCYT  GAMMA   4.0   104.0  1.00E+00
 346   RCYT  EPSI   -203.0   -103.0  1.00E+00
 346   RCYT  ZETA   -121.0   -1.0  1.00E+00

#G347 RGUA
 347  RGUA  ALPHA  -118.0   -18.0 1.00E+00
 347  RGUA  BETA   128.0   228.0  1.00E+00
 347  RGUA  GAMMA   4.0   104.0  1.00E+00
 347  RGUA  EPSI   -203.0   -103.0  1.00E+00
 347  RGUA  ZETA   -121.0   -1.0  1.00E+00

#G348 RGUA
 348  RGUA  ALPHA  -118.0   -18.0 1.00E+00
 348  RGUA  BETA   128.0   228.0  1.00E+00
 348  RGUA  GAMMA   4.0   104.0  1.00E+00
 348  RGUA  EPSI   -203.0   -103.0  1.00E+00
 348  RGUA  ZETA   -121.0   -1.0  1.00E+00

#C349  RCYT
 349   RCYT  ALPHA  -118.0   -18.0 1.00E+00
 349   RCYT  BETA   128.0   228.0  1.00E+00
 349   RCYT  GAMMA   4.0   104.0  1.00E+00
 349   RCYT  EPSI   -203.0   -103.0  1.00E+00
 349   RCYT  ZETA   -121.0   -1.0  1.00E+00
 
#C350  RCYT
 350   RCYT  ALPHA  -118.0   -18.0 1.00E+00
 350   RCYT  BETA   128.0   228.0  1.00E+00
 350   RCYT  GAMMA   4.0   104.0  1.00E+00
 350   RCYT  EPSI   -203.0   -103.0  1.00E+00
 350   RCYT  ZETA   -121.0   -1.0  1.00E+00
 
#G351 RGUA
 351  RGUA  ALPHA  -118.0   -18.0 1.00E+00
 351  RGUA  BETA   128.0   228.0  1.00E+00
 351  RGUA  GAMMA   4.0   104.0  1.00E+00
 351  RGUA  EPSI   -203.0   -103.0  1.00E+00
 351  RGUA  ZETA   -121.0   -1.0  1.00E+00
 
#C352  RCYT
 352   RCYT  ZETA   -121.0   -1.0  1.00E+00
 352   RCYT  ALPHA  -118.0   -18.0 1.00E+00
 352   RCYT  BETA   128.0   228.0  1.00E+00
 352   RCYT  GAMMA   4.0   104.0  1.00E+00
 352   RCYT  EPSI   -203.0   -103.0  1.00E+00
#----------------------------------------------------------------
# Angle Constraints for RNA Phosphodiester Linkages  WIDE
# SLDm
# MFS 
# Note:  alpha, beta, gamma, zeta define torsion angles
#        associated with the 5' phosphodiester linkage
#        and epsi is associated with the 3'linkage.
# 
#----------------------------------------------------------------
#RADE 353
353 RADE  ZETA   -121.0   -1.0  1.00E+00
353 RADE  ALPHA  -118.0   -18.0  1.00E+00
353 RADE  BETA    128.0   228.0  1.00E+00
353 RADE  GAMMA    4.0   104.0  1.00E+00
353 RADE  EPSI  -203.0   -103.0  1.00E+00

#RADE 354
354 RADE  ALPHA  -118.0   -18.0  1.00E+00
354 RADE  BETA    128.0   228.0  1.00E+00
354 RADE  GAMMA    4.0   104.0  1.00E+00
354 RADE  EPSI   -203.0   -103.0  1.00E+00
354 RADE  ZETA   -121.0   -1.0  1.00E+00

#RCYT 355
355 RCYT  ALPHA  -118.0   -18.0  1.00E+00
355 RCYT  BETA    128.0   228.0  1.00E+00
355 RCYT  GAMMA    4.0   104.0  1.00E+00
355 RCYT  EPSI   -203.0   -103.0  1.00E+00
355 RCYT  ZETA   -121.0   -1.0  1.00E+00

#RCYT 356
356 RCYT  ALPHA  -118.0   -18.0  1.00E+00
356 RCYT  BETA    128.0   228.0  1.00E+00
356 RCYT  GAMMA    4.0   104.0  1.00E+00
356 RCYT  EPSI   -203.0   -103.0  1.00E+00
356 RCYT  ZETA   -121.0   -1.0  1.00E+00

#RCYT 357
357 RCYT  ALPHA  -118.0   -18.0  1.00E+00
357 RCYT  BETA    128.0   228.0  1.00E+00
357 RCYT  GAMMA    4.0   104.0  1.00E+00
357 RCYT  EPSI   -203.0   -103.0  1.00E+00
357 RCYT  ZETA   -121.0   -1.0  1.00E+00

#URA 358
358 URA   ALPHA  -118.0   -18.0  1.00E+00
358 URA   BETA    128.0   228.0  1.00E+00
358 URA   GAMMA    4.0   104.0  1.00E+00
358 URA   EPSI   -203.0   -103.0  1.00E+00
358 URA   ZETA   -121.0   -1.0  1.00E+00

#RGUA 359
359 RGUA  ALPHA  -118.0   -18.0  1.00E+00
359 RGUA  BETA    128.0   228.0  1.00E+00
359 RGUA  GAMMA    4.0   104.0  1.00E+00
359 RGUA  EPSI   -203.0   -103.0  1.00E+00
359 RGUA  ZETA   -121.0   -1.0  1.00E+00

#RGUA 360
360 RGUA  ALPHA  -118.0   -18.0  1.00E+00
360 RGUA  BETA    128.0   228.0  1.00E+00
360 RGUA  GAMMA    4.0   104.0  1.00E+00
360 RGUA  EPSI   -203.0   -103.0  1.00E+00
360 RGUA  ZETA   -121.0   -1.0  1.00E+00

#RGUA 361
361 RGUA  ALPHA  -118.0   -18.0  1.00E+00
361 RGUA  BETA    128.0   228.0  1.00E+00
361 RGUA  GAMMA    4.0   104.0  1.00E+00
361 RGUA  EPSI   -203.0   -103.0  1.00E+00
361 RGUA  ZETA   -121.0   -1.0  1.00E+00

#RADE 362
362 RADE  ALPHA  -118.0   -18.0  1.00E+00
362 RADE  BETA    128.0   228.0  1.00E+00
362 RADE  GAMMA    4.0   104.0  1.00E+00
362 RADE  EPSI   -203.0   -103.0  1.00E+00
362 RADE  ZETA   -121.0   -1.0  1.00E+00

#------------- SLDm Tetraloop --------
#RGUA 363
#361 RGUA  ALPHA  -118.0   -18.0  1.00E+00
#361 RGUA  BETA    128.0   228.0  1.00E+00
#361 RGUA  GAMMA    4.0   104.0  1.00E+00
#361 RGUA  EPSI   -203.0   -103.0  1.00E+00
#361 RGUA  ZETA   -121.0   -1.0  1.00E+00

#RADE 364
#RGUA 365
#RGUA 366

#-----------------------------------

#URA 367
367 URA   ALPHA  -118.0   -18.0  1.00E+00
367 URA   BETA    128.0   228.0  1.00E+00
367 URA   GAMMA    4.0   104.0  1.00E+00
367 URA   EPSI   -203.0   -103.0  1.00E+00
367 URA   ZETA   -121.0   -1.0  1.00E+00

#RCYT 368
368 RCYT  ALPHA  -118.0   -18.0  1.00E+00
368 RCYT  BETA    128.0   228.0  1.00E+00
368 RCYT  GAMMA    4.0   104.0  1.00E+00
368 RCYT  EPSI   -203.0   -103.0  1.00E+00
368 RCYT  ZETA   -121.0   -1.0  1.00E+00

#RCYT 369
369 RCYT  ALPHA  -118.0   -18.0  1.00E+00
369 RCYT  BETA    128.0   228.0  1.00E+00
369 RCYT  GAMMA    4.0   104.0  1.00E+00
369 RCYT  EPSI   -203.0   -103.0  1.00E+00
369 RCYT  ZETA   -121.0   -1.0  1.00E+00

#RCYT 370
370 RCYT  ALPHA  -118.0   -18.0  1.00E+00
370 RCYT  BETA    128.0   228.0  1.00E+00
370 RCYT  GAMMA    4.0   104.0  1.00E+00
370 RCYT  EPSI   -203.0   -103.0  1.00E+00
370 RCYT  ZETA   -121.0   -1.0  1.00E+00

#RADE 371
371 RADE  ALPHA  -118.0   -18.0  1.00E+00
371 RADE  BETA    128.0   228.0  1.00E+00
371 RADE  GAMMA    4.0   104.0  1.00E+00
371 RADE  EPSI   -203.0   -103.0  1.00E+00
371 RADE  ZETA   -121.0   -1.0  1.00E+00

#RGUA 372
372 RGUA  ALPHA  -118.0   -18.0  1.00E+00
372 RGUA  BETA    128.0   228.0  1.00E+00
372 RGUA  GAMMA    4.0   104.0  1.00E+00
372 RGUA  EPSI   -203.0   -103.0  1.00E+00
372 RGUA  ZETA   -121.0   -1.0  1.00E+00

#RGUA 373
373 RGUA  ALPHA  -118.0   -18.0  1.00E+00
373 RGUA  BETA    128.0   228.0  1.00E+00
373 RGUA  GAMMA    4.0   104.0  1.00E+00
373 RGUA  EPSI   -203.0   -103.0  1.00E+00
373 RGUA  ZETA   -121.0   -1.0  1.00E+00

#RGUA 374
374 RGUA  ALPHA  -118.0   -18.0  1.00E+00
374 RGUA  BETA    128.0   228.0  1.00E+00
374 RGUA  GAMMA    4.0   104.0  1.00E+00
374 RGUA  EPSI   -203.0   -103.0  1.00E+00
374 RGUA  ZETA   -121.0   -1.0  1.00E+00

#URA 375
375 URA  ALPHA  -118.0   -18.0  1.00E+00
375 URA  BETA    128.0   228.0  1.00E+00
375 URA  GAMMA    4.0   104.0  1.00E+00
375 URA  EPSI   -203.0   -103.0  1.00E+00
375 URA  ZETA   -121.0   -1.0  1.00E+00

#URA 376
376 URA  ALPHA  -118.0   -18.0  1.00E+00
376 URA  BETA    128.0   228.0  1.00E+00
376 URA  GAMMA    4.0   104.0  1.00E+00
#376 URA  EPSI   -203.0   -103.0  1.00E+00
376 URA  ZETA   -121.0   -1.0  1.00E+00


Please acknowledge these references in publications where the data from this site have been utilized.

Contact the webmaster for help, if required. Monday, May 13, 2024 7:47:58 PM GMT (wattos1)