NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
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590349 |
2mok   |
19945 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2mok
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 177
_NOE_completeness_stats.Total_atom_count 2752
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 935
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 44.1
_NOE_completeness_stats.Constraint_unexpanded_count 2735
_NOE_completeness_stats.Constraint_count 2735
_NOE_completeness_stats.Constraint_exp_unfiltered_count 2648
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 2
_NOE_completeness_stats.Constraint_intraresidue_count 394
_NOE_completeness_stats.Constraint_surplus_count 0
_NOE_completeness_stats.Constraint_observed_count 2339
_NOE_completeness_stats.Constraint_expected_count 2648
_NOE_completeness_stats.Constraint_matched_count 1168
_NOE_completeness_stats.Constraint_unmatched_count 1171
_NOE_completeness_stats.Constraint_exp_nonobs_count 1480
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 771 719 456 63.4 1.0 >sigma
medium-range 628 599 245 40.9 -0.3 .
long-range 940 1330 467 35.1 -0.7 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 1 1 0 1 0 0 0 0 0 0 . 0 100.0 100.0
shell 2.00 2.50 277 195 0 73 0 73 0 39 0 8 . 2 70.4 70.5
shell 2.50 3.00 518 303 0 52 11 122 0 88 0 25 . 5 58.5 62.7
shell 3.00 3.50 721 301 0 14 5 71 1 141 0 55 . 14 41.7 52.7
shell 3.50 4.00 1131 368 0 5 0 38 0 143 0 154 . 28 32.5 44.1
shell 4.00 4.50 1857 452 0 3 0 8 0 126 0 236 . 79 24.3 36.0
shell 4.50 5.00 2502 339 0 0 0 3 0 40 0 203 . 93 13.5 28.0
shell 5.00 5.50 2963 202 0 1 0 0 0 20 0 100 . 81 6.8 21.7
shell 5.50 6.00 3426 101 0 1 0 1 0 3 0 38 . 58 2.9 16.9
shell 6.00 6.50 3724 37 0 0 0 0 0 2 0 11 . 24 1.0 13.4
shell 6.50 7.00 4305 27 0 0 0 0 0 4 0 4 . 19 0.6 10.9
shell 7.00 7.50 4701 6 0 0 0 0 0 0 0 1 . 5 0.1 8.9
shell 7.50 8.00 5203 4 0 0 0 0 0 1 0 0 . 3 0.1 7.5
shell 8.00 8.50 5697 1 0 0 0 0 0 0 0 0 . 1 0.0 6.3
shell 8.50 9.00 5959 1 0 0 0 0 0 0 0 0 . 1 0.0 5.4
sums . . 42985 2338 0 150 16 316 1 607 0 835 . 413 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 MET 6 0 6 0 0.0 -3.2 >sigma
1 2 ALA 3 13 22 9 40.9 -0.4 .
1 3 ILE 6 23 29 12 41.4 -0.3 .
1 4 THR 4 37 42 21 50.0 0.2 .
1 5 GLY 3 20 22 10 45.5 -0.1 .
1 6 ILE 6 54 61 26 42.6 -0.3 .
1 7 PHE 7 36 63 22 34.9 -0.8 .
1 8 PHE 7 30 43 16 37.2 -0.6 .
1 9 GLY 3 15 14 7 50.0 0.2 .
1 10 SER 4 11 19 6 31.6 -1.0 >sigma
1 11 ASP 4 8 17 5 29.4 -1.2 >sigma
1 12 THR 4 14 11 7 63.6 1.2 >sigma
1 13 GLY 3 9 13 4 30.8 -1.1 >sigma
1 14 ASN 6 11 22 8 36.4 -0.7 .
1 15 THR 4 28 38 17 44.7 -0.1 .
1 16 GLU 5 20 30 10 33.3 -0.9 .
1 17 ASN 6 28 22 13 59.1 0.9 .
1 18 ILE 6 45 57 23 40.4 -0.4 .
1 19 ALA 3 36 40 20 50.0 0.2 .
1 20 LYS 7 23 25 9 36.0 -0.7 .
1 21 MET 6 38 35 18 51.4 0.3 .
1 22 ILE 6 58 64 33 51.6 0.3 .
1 23 GLN 7 38 48 26 54.2 0.5 .
1 24 LYS 7 18 18 6 33.3 -0.9 .
1 25 GLN 7 35 29 14 48.3 0.1 .
1 26 LEU 7 27 52 11 21.2 -1.7 >sigma
1 27 GLY 3 9 14 4 28.6 -1.2 >sigma
1 28 LYS 7 28 16 10 62.5 1.1 >sigma
1 29 ASP 4 16 13 8 61.5 1.0 >sigma
1 30 VAL 5 31 51 19 37.3 -0.6 .
1 31 ALA 3 30 35 17 48.6 0.1 .
1 32 ASP 4 21 20 12 60.0 0.9 .
1 33 VAL 5 37 37 19 51.4 0.3 .
1 34 HIS 6 19 24 10 41.7 -0.3 .
1 35 ASP 4 21 14 7 50.0 0.2 .
1 36 ILE 6 59 55 29 52.7 0.4 .
1 37 ALA 3 27 14 12 85.7 2.7 >sigma
1 38 LYS 7 22 20 11 55.0 0.6 .
1 39 SER 4 18 22 9 40.9 -0.4 .
1 40 SER 4 18 16 9 56.3 0.7 .
1 41 LYS 7 45 39 19 48.7 0.2 .
1 42 GLU 5 24 17 13 76.5 2.0 >sigma
1 43 ASP 4 27 19 16 84.2 2.6 >sigma
1 44 LEU 7 56 60 24 40.0 -0.4 .
1 45 GLU 5 32 26 16 61.5 1.0 >sigma
1 46 ALA 3 24 13 11 84.6 2.6 >sigma
1 47 TYR 6 33 42 19 45.2 -0.1 .
1 48 ASP 4 17 18 9 50.0 0.2 .
1 49 ILE 6 49 54 22 40.7 -0.4 .
1 50 LEU 7 41 59 20 33.9 -0.9 .
1 51 LEU 7 46 56 25 44.6 -0.1 .
1 52 LEU 7 28 58 12 20.7 -1.7 >sigma
1 53 GLY 3 15 23 8 34.8 -0.8 .
1 54 ILE 6 40 58 25 43.1 -0.2 .
1 55 PRO 5 14 34 9 26.5 -1.4 >sigma
1 56 THR 4 28 30 15 50.0 0.2 .
1 57 TRP 10 21 34 9 26.5 -1.4 >sigma
1 58 TYR 6 7 20 5 25.0 -1.5 >sigma
1 59 TYR 6 14 20 7 35.0 -0.8 .
1 60 GLY 3 14 19 9 47.4 0.1 .
1 61 GLU 5 13 16 8 50.0 0.2 .
1 62 ALA 3 27 29 19 65.5 1.3 >sigma
1 63 GLN 7 11 28 4 14.3 -2.2 >sigma
1 64 CYS 4 9 11 6 54.5 0.5 .
1 65 ASP 4 21 19 11 57.9 0.8 .
1 66 TRP 10 57 60 23 38.3 -0.6 .
1 67 ASP 4 15 21 9 42.9 -0.2 .
1 68 ASP 4 10 13 5 38.5 -0.5 .
1 69 PHE 7 42 47 26 55.3 0.6 .
1 70 PHE 7 53 50 32 64.0 1.2 >sigma
1 71 PRO 5 15 15 11 73.3 1.8 >sigma
1 72 THR 4 29 32 20 62.5 1.1 >sigma
1 73 LEU 7 58 64 32 50.0 0.2 .
1 74 GLU 5 30 23 17 73.9 1.9 >sigma
1 75 GLU 5 23 22 12 54.5 0.5 .
1 76 ILE 6 53 58 29 50.0 0.2 .
1 77 ASP 4 14 7 3 42.9 -0.2 .
1 78 PHE 7 55 66 26 39.4 -0.5 .
1 79 ASN 6 20 11 7 63.6 1.2 >sigma
1 80 GLY 3 8 7 4 57.1 0.7 .
1 81 LYS 7 29 36 14 38.9 -0.5 .
1 82 LEU 7 38 42 17 40.5 -0.4 .
1 83 VAL 5 38 62 24 38.7 -0.5 .
1 84 ALA 3 30 27 16 59.3 0.9 .
1 85 LEU 7 28 61 15 24.6 -1.5 >sigma
1 86 PHE 7 37 67 23 34.3 -0.8 .
1 87 GLY 3 19 24 8 33.3 -0.9 .
1 88 CYS 4 14 18 6 33.3 -0.9 .
1 89 GLY 3 9 13 3 23.1 -1.6 >sigma
1 90 ASP 4 12 13 3 23.1 -1.6 >sigma
1 91 GLN 7 21 18 7 38.9 -0.5 .
1 92 GLU 5 18 20 9 45.0 -0.1 .
1 93 ASP 4 12 13 6 46.2 -0.0 .
1 94 TYR 6 19 29 10 34.5 -0.8 .
1 95 ALA 3 37 21 14 66.7 1.4 >sigma
1 96 GLU 5 30 20 12 60.0 0.9 .
1 97 TYR 6 32 39 13 33.3 -0.9 .
1 98 PHE 7 27 36 6 16.7 -2.0 >sigma
1 99 CYS 4 13 24 9 37.5 -0.6 .
1 100 ASP 4 23 28 14 50.0 0.2 .
1 101 ALA 3 25 29 13 44.8 -0.1 .
1 102 LEU 7 36 55 19 34.5 -0.8 .
1 103 GLY 3 16 18 8 44.4 -0.1 .
1 104 THR 4 22 24 10 41.7 -0.3 .
1 105 ILE 6 60 65 28 43.1 -0.2 .
1 106 ARG 7 42 46 22 47.8 0.1 .
1 107 ASP 4 26 16 10 62.5 1.1 >sigma
1 108 ILE 6 54 50 32 64.0 1.2 >sigma
1 109 ILE 6 68 65 30 46.2 -0.0 .
1 110 GLU 5 30 27 14 51.9 0.4 .
1 111 PRO 5 18 17 12 70.6 1.6 >sigma
1 112 ARG 7 42 29 18 62.1 1.1 >sigma
1 113 GLY 3 16 12 8 66.7 1.4 >sigma
1 114 ALA 3 28 32 14 43.8 -0.2 .
1 115 THR 4 27 17 12 70.6 1.6 >sigma
1 116 ILE 6 33 43 18 41.9 -0.3 .
1 117 VAL 5 38 40 21 52.5 0.4 .
1 118 GLY 3 17 16 11 68.8 1.5 >sigma
1 119 HIS 6 13 14 6 42.9 -0.2 .
1 120 TRP 10 40 50 21 42.0 -0.3 .
1 121 PRO 5 16 15 10 66.7 1.4 >sigma
1 122 THR 4 34 34 23 67.6 1.4 >sigma
1 123 ALA 3 16 13 10 76.9 2.1 >sigma
1 124 GLY 3 7 7 5 71.4 1.7 >sigma
1 125 TYR 6 28 31 13 41.9 -0.3 .
1 126 HIS 6 13 7 4 57.1 0.7 .
1 127 PHE 7 20 22 9 40.9 -0.4 .
1 128 GLU 5 27 21 8 38.1 -0.6 .
1 129 ALA 3 27 22 12 54.5 0.5 .
1 130 SER 4 26 25 12 48.0 0.1 .
1 131 LYS 7 17 23 10 43.5 -0.2 .
1 132 GLY 3 14 26 10 38.5 -0.5 .
1 133 LEU 7 37 37 18 48.6 0.1 .
1 134 ALA 3 21 23 11 47.8 0.1 .
1 135 ASP 4 14 17 9 52.9 0.4 .
1 136 ASP 4 11 9 5 55.6 0.6 .
1 137 ASP 4 9 10 5 50.0 0.2 .
1 138 HIS 6 21 20 11 55.0 0.6 .
1 139 PHE 7 38 56 26 46.4 -0.0 .
1 140 VAL 5 31 43 15 34.9 -0.8 .
1 141 GLY 3 16 24 8 33.3 -0.9 .
1 142 LEU 7 51 62 22 35.5 -0.7 .
1 143 ALA 3 22 22 12 54.5 0.5 .
1 144 ILE 6 20 42 8 19.0 -1.9 >sigma
1 145 ASP 4 13 20 6 30.0 -1.1 >sigma
1 146 GLU 5 10 13 5 38.5 -0.5 .
1 147 ASP 4 10 8 6 75.0 1.9 >sigma
1 148 ARG 7 22 21 12 57.1 0.7 .
1 149 GLN 7 13 12 4 33.3 -0.9 .
1 150 PRO 5 7 28 4 14.3 -2.2 >sigma
1 151 GLU 5 16 13 8 61.5 1.0 >sigma
1 152 LEU 7 25 25 11 44.0 -0.2 .
1 153 THR 4 32 26 14 53.8 0.5 .
1 154 ALA 3 30 17 14 82.4 2.4 >sigma
1 155 GLU 5 23 21 11 52.4 0.4 .
1 156 ARG 7 38 42 12 28.6 -1.2 >sigma
1 157 VAL 5 45 48 20 41.7 -0.3 .
1 158 GLU 5 23 31 12 38.7 -0.5 .
1 159 LYS 7 24 25 9 36.0 -0.7 .
1 160 TRP 10 66 75 39 52.0 0.4 .
1 161 VAL 5 45 57 25 43.9 -0.2 .
1 162 LYS 7 32 26 11 42.3 -0.3 .
1 163 GLN 7 25 19 9 47.4 0.1 .
1 164 ILE 6 66 63 31 49.2 0.2 .
1 165 SER 4 21 27 9 33.3 -0.9 .
1 166 GLU 5 25 17 11 64.7 1.2 >sigma
1 167 GLU 5 26 27 13 48.1 0.1 .
1 168 LEU 7 30 62 15 24.2 -1.5 >sigma
1 169 HIS 6 19 15 7 46.7 0.0 .
1 170 LEU 7 34 58 13 22.4 -1.6 >sigma
1 171 ASP 4 24 25 10 40.0 -0.4 .
1 172 GLU 5 18 13 7 53.8 0.5 .
1 173 ILE 6 23 33 12 36.4 -0.7 .
1 174 LEU 7 27 34 12 35.3 -0.8 .
1 175 ASN 6 15 14 4 28.6 -1.2 >sigma
1 176 ALA 3 9 3 2 66.7 1.4 >sigma
stop_
save_
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