NMR Restraints Grid

Result table
(Save to zip file containing files for each block)

image mrblock_id pdb_id cing stage program type subtype subsubtype

452539 2vxd cing 4-filtered-FRED Wattos check stereo assignment distance

data_2vxd


save_assign_stereo
    _Stereo_assign_list.Sf_category          stereo_assignments
    _Stereo_assign_list.Triplet_count        18
    _Stereo_assign_list.Swap_count           1
    _Stereo_assign_list.Swap_percentage      5.6
    _Stereo_assign_list.Deassign_count       0
    _Stereo_assign_list.Deassign_percentage  0.0
    _Stereo_assign_list.Model_count          20
    _Stereo_assign_list.Total_e_low_states   0.007
    _Stereo_assign_list.Total_e_high_states  19.204
    _Stereo_assign_list.Crit_abs_e_diff      0.100
    _Stereo_assign_list.Crit_rel_e_diff      0.000
    _Stereo_assign_list.Crit_mdls_favor_pct  75.0
    _Stereo_assign_list.Crit_sing_mdl_viol   1.000
    _Stereo_assign_list.Crit_multi_mdl_viol  0.500
    _Stereo_assign_list.Crit_multi_mdl_pct   50.0
    _Stereo_assign_list.Details              
;
Description of the tags in this list:
*  1 * NMR-STAR 3 administrative tag
*  2 * NMR-STAR 3 administrative tag
*  3 * NMR-STAR 3 administrative tag
*  4 * Number of triplets (atom-group pair and pseudo)
*  5 * Number of triplets that were swapped
*  6 * Percentage of triplets that were swapped
*  7 * Number of deassigned triplets
*  8 * Percentage of deassigned triplets
*  9 * Number of models in ensemble
* 10 * Energy of the states with the lower energies summed for all triplets (Ang.**2)
* 11 * Energy of the states with the higher energies summed for all triplets (Ang.**2)
* 12 * Item 9-8
* 13 * Criterium for swapping assignment on the absolute energy difference (Ang.**2)
* 14 * Criterium for swapping assignment on the relative energy difference (Ang.**2)
* 15 * Criterium for swapping assignment on the percentage of models favoring a swap
* 16 * Criterium for deassignment on a single model violation (Ang.)
* 17 * Criterium for deassignment on a multiple model violation (Ang.)
* 18 * Criterium for deassignment on a percentage of models
* 19 * this tag

Description of the tags in the table below:
*  1 * Chain identifier (can be absent if none defined)
*  2 * Residue number
*  3 * Residue name
*  4 * Name of pseudoatom representing the triplet
*  5 * Ordinal number of assignment (1 is assigned first)
*  6 * 'yes' if assignment state is swapped with respect to restraint file
*  7 * Percentage of models in which the assignment with the lowest
        overall energy is favoured
*  8 * Percentage of difference between lowest and highest overall energy
        with respect to the highest overall energy
*  9 * Difference between lowest and highest overall energy
* 10 * Energy of the highest overall energy state (Ang.**2)
* 11 * Energy of the lowest overall energy state (Ang.**2)
* 12 * Number of restraints involved with the triplet. The highest ranking
        triplet on this number, is assigned first
* 13 * Number of restraints involved with the triplet that are ambiguous
        besides the ambiguity from this triplet
* 14 * 'yes' if restraints included in this triplet are deassigned
* 15 * Maximum unaveraged violation before deassignment (Ang.)
* 16 * Number of violated restraints above threshold for a single model
        before deassignment (given by Single_mdl_crit_count)
* 17 * Number of violated restraints above threshold for a multiple models
        before deassignment (given by Multi_mdl_crit_count)
* 18 * NMR-STAR 3.0 administrative tag
* 19 * NMR-STAR 3.0 administrative tag
;


    loop_
       _Stereo_assign.Entity_assembly_ID
       _Stereo_assign.Comp_index_ID
       _Stereo_assign.Comp_ID
       _Stereo_assign.Pseudo_Atom_ID
       _Stereo_assign.Num
       _Stereo_assign.Swapped
       _Stereo_assign.Models_favoring_pct
       _Stereo_assign.Energy_difference_pct
       _Stereo_assign.Energy_difference
       _Stereo_assign.Energy_high_state
       _Stereo_assign.Energy_low_state
       _Stereo_assign.Constraint_count
       _Stereo_assign.Constraint_ambi_count
       _Stereo_assign.Deassigned
       _Stereo_assign.Violation_max
       _Stereo_assign.Single_mdl_crit_count
       _Stereo_assign.Multi_mdl_crit_count

       1  3 SER QB  7 no   70.0 100.0 0.348 0.348 0.000  6 0 no 0.000 0 0 
       1  4 VAL QG  1 no  100.0 100.0 6.871 6.871 0.000 15 0 no 0.023 0 0 
       1  7 ILE QG 16 no   90.0 100.0 0.098 0.098 0.000  3 1 no 0.017 0 0 
       1  8 LYS QB 10 no  100.0 100.0 0.425 0.425 0.000  5 0 no 0.000 0 0 
       1  8 LYS QG  4 no   40.0 100.0 0.058 0.058 0.000  7 0 no 0.000 0 0 
       1 11 MET QB  9 no  100.0 100.0 0.264 0.264 0.000  5 0 no 0.003 0 0 
       1 15 ILE QG 13 no    5.0  93.9 0.035 0.037 0.002  4 0 no 0.089 0 0 
       1 17 LYS QB 12 no   90.0 100.0 0.586 0.586 0.000  4 0 no 0.010 0 0 
       1 18 GLY QA 15 no  100.0   0.0 0.000 0.000 0.000  3 0 no 0.000 0 0 
       1 19 GLY QA 14 yes 100.0 100.0 0.307 0.307 0.000  3 0 no 0.002 0 0 
       1 21 LEU QB 11 no   95.0 100.0 2.210 2.210 0.000  5 2 no 0.015 0 0 
       1 22 PRO QD  5 no   20.0  99.9 0.013 0.013 0.000  7 2 no 0.010 0 0 
       1 24 VAL QG  6 no  100.0 100.0 4.518 4.518 0.000  6 0 no 0.000 0 0 
       1 32 VAL QG  2 no  100.0  99.8 1.305 1.307 0.002  9 0 no 0.067 0 0 
       1 36 PHE QB  8 no   25.0  99.8 0.021 0.021 0.000  6 1 no 0.027 0 0 
       1 47 LEU QB 17 no  100.0   0.0 0.000 0.000 0.000  2 0 no 0.000 0 0 
       1 51 ARG QB  3 no  100.0  99.9 2.141 2.143 0.002  7 0 no 0.048 0 0 
       1 53 SER QB 18 no  100.0   0.0 0.000 0.000 0.000  1 0 no 0.000 0 0 
    stop_

save_

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Contact the webmaster for help, if required. Friday, May 10, 2024 5:16:38 PM GMT (wattos1)

image	mrblock_id	pdb_id	cing	stage	program	type	subtype	subsubtype
	452539	2vxd	cing	4-filtered-FRED	Wattos	check	stereo assignment	distance