NMR Restraints Grid
| |
NMR Restraints Grid |
|
Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
397769 |
1t17   |
6120 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_1t17
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 148
_NOE_completeness_stats.Total_atom_count 2328
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 799
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 45.0
_NOE_completeness_stats.Constraint_unexpanded_count 2204
_NOE_completeness_stats.Constraint_count 2204
_NOE_completeness_stats.Constraint_exp_unfiltered_count 2068
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 0
_NOE_completeness_stats.Constraint_intraresidue_count 504
_NOE_completeness_stats.Constraint_surplus_count 191
_NOE_completeness_stats.Constraint_observed_count 1509
_NOE_completeness_stats.Constraint_expected_count 1923
_NOE_completeness_stats.Constraint_matched_count 866
_NOE_completeness_stats.Constraint_unmatched_count 643
_NOE_completeness_stats.Constraint_exp_nonobs_count 1057
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 697 653 395 60.5 1.0 >sigma
medium-range 295 397 157 39.5 -0.4 .
long-range 517 873 314 36.0 -0.6 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 34 16 0 2 2 2 2 2 1 2 . 3 47.1 47.1
shell 2.00 2.50 212 159 28 47 22 17 10 6 1 5 . 23 75.0 71.1
shell 2.50 3.00 329 205 0 42 24 40 29 16 6 8 . 40 62.3 66.1
shell 3.00 3.50 490 213 0 0 39 48 27 22 21 12 . 44 43.5 55.7
shell 3.50 4.00 858 273 0 0 0 58 40 28 29 36 . 82 31.8 45.0
shell 4.00 4.50 1358 299 0 0 0 0 42 67 56 41 . 93 22.0 35.5
shell 4.50 5.00 1830 187 0 0 0 0 0 28 18 43 . 98 10.2 26.5
shell 5.00 5.50 2167 111 0 0 0 0 0 0 8 25 . 78 5.1 20.1
shell 5.50 6.00 2547 29 0 0 0 0 0 0 0 3 . 26 1.1 15.2
shell 6.00 6.50 2875 12 0 0 0 0 0 0 0 0 . 12 0.4 11.8
shell 6.50 7.00 3063 5 0 0 0 0 0 0 0 0 . 5 0.2 9.6
shell 7.00 7.50 3317 0 0 0 0 0 0 0 0 0 . 0 0.0 7.9
shell 7.50 8.00 3742 0 0 0 0 0 0 0 0 0 . 0 0.0 6.6
shell 8.00 8.50 3964 0 0 0 0 0 0 0 0 0 . 0 0.0 5.6
shell 8.50 9.00 4097 0 0 0 0 0 0 0 0 0 . 0 0.0 4.9
sums . . 30883 1509 28 91 87 165 150 169 140 175 . 504 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 MET 6 6 24 4 16.7 -1.6 >sigma
1 2 HIS 6 13 15 6 40.0 -0.4 .
1 3 ARG 7 18 23 10 43.5 -0.2 .
1 4 HIS 6 31 27 14 51.9 0.2 .
1 5 VAL 5 26 15 10 66.7 1.0 .
1 6 VAL 5 41 35 21 60.0 0.6 .
1 7 THR 4 22 15 6 40.0 -0.4 .
1 8 LYS 7 38 51 21 41.2 -0.4 .
1 9 VAL 5 25 24 13 54.2 0.3 .
1 10 LEU 7 40 57 26 45.6 -0.1 .
1 11 PRO 5 9 16 6 37.5 -0.5 .
1 12 TYR 6 29 33 19 57.6 0.5 .
1 13 THR 4 9 15 5 33.3 -0.8 .
1 14 PRO 5 4 18 3 16.7 -1.6 >sigma
1 15 ASP 4 12 18 7 38.9 -0.5 .
1 16 GLN 7 13 28 8 28.6 -1.0 >sigma
1 17 LEU 7 15 55 10 18.2 -1.5 >sigma
1 18 PHE 7 25 18 12 66.7 1.0 .
1 19 GLU 5 30 19 14 73.7 1.3 >sigma
1 20 LEU 7 29 47 17 36.2 -0.6 .
1 21 VAL 5 30 49 15 30.6 -0.9 .
1 22 GLY 3 6 18 4 22.2 -1.3 >sigma
1 23 ASP 4 16 22 10 45.5 -0.1 .
1 24 VAL 5 33 33 11 33.3 -0.8 .
1 25 ASP 4 22 17 11 64.7 0.9 .
1 26 ALA 3 15 21 9 42.9 -0.3 .
1 27 TYR 6 16 21 10 47.6 -0.0 .
1 28 PRO 5 2 14 0 0.0 -2.5 >sigma
1 29 LYS 7 2 9 0 0.0 -2.5 >sigma
1 30 PHE 7 5 21 1 4.8 -2.2 >sigma
1 31 VAL 5 25 32 13 40.6 -0.4 .
1 32 PRO 5 8 27 5 18.5 -1.5 >sigma
1 33 TRP 10 19 53 12 22.6 -1.3 >sigma
1 34 ILE 6 24 37 12 32.4 -0.8 .
1 35 THR 4 14 32 10 31.3 -0.9 .
1 36 GLY 3 21 13 10 76.9 1.5 >sigma
1 37 MET 6 20 21 13 61.9 0.7 .
1 38 ARG 7 19 22 10 45.5 -0.1 .
1 39 THR 4 32 34 21 61.8 0.7 .
1 40 TRP 10 22 29 13 44.8 -0.2 .
1 41 ASN 6 24 18 12 66.7 1.0 .
1 42 GLY 3 26 13 11 84.6 1.9 >sigma
1 43 ARG 7 27 19 14 73.7 1.3 >sigma
1 44 VAL 5 24 16 13 81.3 1.7 >sigma
1 45 ASP 4 15 13 8 61.5 0.7 .
1 46 GLY 3 13 6 6 100.0 2.7 >sigma
1 47 ALA 3 26 21 19 90.5 2.2 >sigma
1 48 VAL 5 29 31 23 74.2 1.3 >sigma
1 49 SER 4 22 20 12 60.0 0.6 .
1 50 THR 4 33 30 17 56.7 0.4 .
1 51 VAL 5 46 37 22 59.5 0.6 .
1 52 ASP 4 16 22 13 59.1 0.6 .
1 53 ALA 3 22 31 18 58.1 0.5 .
1 54 GLU 5 20 23 15 65.2 0.9 .
1 55 ALA 3 18 19 10 52.6 0.2 .
1 56 GLN 7 21 38 14 36.8 -0.6 .
1 57 VAL 5 20 42 15 35.7 -0.6 .
1 58 GLY 3 10 15 5 33.3 -0.8 .
1 59 PHE 7 0 7 0 0.0 -2.5 >sigma
1 60 SER 4 3 21 1 4.8 -2.2 >sigma
1 61 PHE 7 14 10 3 30.0 -0.9 .
1 62 LEU 7 24 29 13 44.8 -0.2 .
1 63 ARG 7 15 7 5 71.4 1.2 >sigma
1 64 GLU 5 18 24 11 45.8 -0.1 .
1 65 LYS 7 17 22 13 59.1 0.6 .
1 66 PHE 7 23 36 13 36.1 -0.6 .
1 67 ALA 3 19 29 16 55.2 0.4 .
1 68 THR 4 17 38 12 31.6 -0.8 .
1 69 ARG 7 13 34 8 23.5 -1.3 >sigma
1 70 VAL 5 40 46 19 41.3 -0.3 .
1 71 ARG 7 27 30 16 53.3 0.3 .
1 72 ARG 7 18 31 9 29.0 -1.0 .
1 73 ASP 4 26 28 16 57.1 0.5 .
1 74 LYS 7 30 24 16 66.7 1.0 .
1 75 ASP 4 18 21 12 57.1 0.5 .
1 76 ALA 3 23 18 15 83.3 1.8 >sigma
1 77 ARG 7 11 13 7 53.8 0.3 .
1 78 SER 4 25 20 16 80.0 1.6 >sigma
1 79 ILE 6 26 55 16 29.1 -1.0 .
1 80 ASP 4 21 20 12 60.0 0.6 .
1 81 VAL 5 30 36 22 61.1 0.7 .
1 82 SER 4 15 18 8 44.4 -0.2 .
1 83 LEU 7 18 41 9 22.0 -1.3 >sigma
1 84 LEU 7 15 45 6 13.3 -1.8 >sigma
1 85 TYR 6 13 26 9 34.6 -0.7 .
1 86 GLY 3 13 24 9 37.5 -0.5 .
1 87 PRO 5 7 15 4 26.7 -1.1 >sigma
1 88 PHE 7 8 10 4 40.0 -0.4 .
1 89 LYS 7 13 23 9 39.1 -0.5 .
1 90 ARG 7 22 24 11 45.8 -0.1 .
1 91 LEU 7 25 43 14 32.6 -0.8 .
1 92 ASN 6 27 18 13 72.2 1.2 >sigma
1 93 ASN 6 21 18 15 83.3 1.8 >sigma
1 94 GLY 3 13 13 8 61.5 0.7 .
1 95 TRP 10 22 31 15 48.4 0.0 .
1 96 ARG 7 22 25 12 48.0 -0.0 .
1 97 PHE 7 35 46 17 37.0 -0.6 .
1 98 MET 6 12 15 6 40.0 -0.4 .
1 99 PRO 5 5 14 2 14.3 -1.7 >sigma
1 100 GLU 5 14 15 6 40.0 -0.4 .
1 101 GLY 3 10 6 5 83.3 1.8 >sigma
1 102 ASP 4 7 5 4 80.0 1.6 >sigma
1 103 ALA 3 21 19 12 63.2 0.8 .
1 104 THR 4 27 26 11 42.3 -0.3 .
1 105 ARG 7 24 31 11 35.5 -0.6 .
1 106 VAL 5 42 50 22 44.0 -0.2 .
1 107 GLU 5 18 22 9 40.9 -0.4 .
1 108 PHE 7 31 33 16 48.5 0.0 .
1 109 VAL 5 13 28 9 32.1 -0.8 .
1 110 ILE 6 29 45 17 37.8 -0.5 .
1 111 GLU 5 32 26 17 65.4 0.9 .
1 112 PHE 7 32 40 20 50.0 0.1 .
1 113 ALA 3 27 29 13 44.8 -0.2 .
1 114 PHE 7 26 38 16 42.1 -0.3 .
1 115 LYS 7 11 12 9 75.0 1.4 >sigma
1 116 SER 4 17 25 13 52.0 0.2 .
1 117 ALA 3 14 12 10 83.3 1.8 >sigma
1 118 LEU 7 19 20 10 50.0 0.1 .
1 119 LEU 7 33 42 18 42.9 -0.3 .
1 120 ASP 4 21 30 15 50.0 0.1 .
1 121 ALA 3 18 20 11 55.0 0.4 .
1 122 MET 6 21 23 14 60.9 0.7 .
1 123 LEU 7 26 52 13 25.0 -1.2 >sigma
1 124 ALA 3 30 31 14 45.2 -0.2 .
1 125 ALA 3 12 18 6 33.3 -0.8 .
1 126 ASN 6 14 23 9 39.1 -0.5 .
1 127 VAL 5 37 40 20 50.0 0.1 .
1 128 ASP 4 15 20 10 50.0 0.1 .
1 129 ARG 7 16 18 9 50.0 0.1 .
1 130 ALA 3 22 27 12 44.4 -0.2 .
1 131 ALA 3 27 28 14 50.0 0.1 .
1 132 GLY 3 13 16 10 62.5 0.7 .
1 133 LYS 7 31 42 20 47.6 -0.0 .
1 134 LEU 7 25 55 16 29.1 -1.0 .
1 135 ILE 6 40 58 25 43.1 -0.3 .
1 136 ALA 3 18 17 11 64.7 0.9 .
1 137 CYS 4 19 18 13 72.2 1.2 >sigma
1 138 PHE 7 17 58 13 22.4 -1.3 >sigma
1 139 GLU 5 34 31 22 71.0 1.2 >sigma
1 140 ALA 3 24 17 13 76.5 1.5 >sigma
1 141 ARG 7 16 23 11 47.8 -0.0 .
1 142 ALA 3 26 30 17 56.7 0.4 .
1 143 GLN 7 18 19 12 63.2 0.8 .
1 144 GLN 7 23 17 12 70.6 1.2 >sigma
1 145 LEU 7 14 19 12 63.2 0.8 .
1 146 HIS 6 20 18 10 55.6 0.4 .
1 147 GLY 3 11 11 8 72.7 1.3 >sigma
1 148 ALA 3 1 3 1 33.3 -0.8 .
stop_
save_
Contact the webmaster for help, if required. Monday, May 13, 2024 10:16:47 PM GMT (wattos1)