NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing stage position program type subtype subsubtype
511709 2l94 17436 cing 1-original 4 XPLOR/CNS distance NOE ambi


!Updated 2010/03/19 by rjm
!---------------------------------------------------------------------

!---------------------------------------------------------------------
!Distance Restraints
!---------------------------------------------------------------------
!weak (3.75-6.25 A)   5.0 1.25 1.25
!medium (3.0-5.0 A)   4.0 1.0 1.0
!strong (2.25-3.75 A)   3.0 0.75 0.75
!very strong (1.8-2.5 A)  2.0 0.2 0.5
!strong ambiguous H5' (2.0-4.25 A) 3.0 1.0 1.25
!medium ambiguous H5' (2.0-5.0 A) 4.0 2.0 1.0
!weak ambiguous H5' (3.0-6.25 A) 5.0 2.0 1.25

!---------------------------------------------------------------------
!HIV1_45ccc RNA (segid A) to DB213 (segid B) NOEs (42 intermolecular)
!---------------------------------------------------------------------

assign (resid 8 and name H3' and segid A) (resid 1 and name H+ and segid B) 4.0 1.5 2.5

assign (resid 9 and name H3' and segid A) (resid 1 and name H+ and segid B) 4.0 1.5 2.5
assign (resid 9 and name H4' and segid A) (resid 1 and name H+ and segid B) 4.0 1.5 2.5
assign (resid 9 and name H5 and segid A) (resid 1 and (name H7+4 or name H8+4) and segid B) 4.0 1.5 2.0
assign (resid 9 and name H1' and segid A) (resid 1 and (name H7+4 or name H8+4) and segid B) 4.0 1.5 2.0
assign (resid 9 and name H1' and segid A) (resid 1 and name H4+4 and segid B) 4.0 1.5 2.5

assign (resid 10 and name H5 and segid A) (resid 1 and (name H7+4 or name H8+4) and segid B) 3.0 1.0 3.0
assign (resid 10 and name H5 and segid A) (resid 1 and name H3+4 and segid B) 3.0 1.0 3.0
assign (resid 10 and name H5 and segid A) (resid 1 and name H4+4 and segid B) 4.0 1.5 2.0
assign (resid 10 and name H1' and segid A) (resid 1 and (name H7+4 or name H8+4) and segid B) 4.0 1.5 2.5
assign (resid 10 and name H1' and segid A) (resid 1 and name H3+4 and segid B) 4.0 1.5 2.5

assign (resid 11 and name H1 and segid A) (resid 1 and (name H7+4 or name H8+4) and segid B) 4.0 1.5 2.0
assign (resid 11 and name H8 and segid A) (resid 1 and name H3+4 and segid B) 4.0 1.5 2.5
assign (resid 11 and name H8 and segid A) (resid 1 and name H4+4 and segid B) 4.0 1.5 2.0
assign (resid 11 and name H8 and segid A) (resid 1 and (name H7+4 or name H8+4) and segid B) 3.0 1.0 3.0
assign (resid 11 and name H1' and segid A) (resid 1 and (name H7+4 or name H8+4) and segid B) 4.0 1.5 2.5

assign (resid 12 and name H8 and segid A) (resid 1 and (name H7+4 or name H8+4) and segid B) 4.0 1.5 2.5

assign (resid 15 and name H3 and segid A) (resid 1 and (name H7+1 or name H8+1) and segid B) 4.0 1.5 2.0

assign (resid 16 and name H3 and segid A) (resid 1 and (name H7+1 or name H8+1) and segid B) 3.0 1.0 3.0
assign (resid 16 and name H3 and segid A) (resid 1 and name H3+1 and segid B) 3.0 1.0 3.0
assign (resid 16 and name H3 and segid A) (resid 1 and name H4+1 and segid B) 4.0 1.5 2.0

assign (resid 24 and name H1 and segid A) (resid 1 and (name H7+1 or name H8+1) and segid B) 4.0 1.5 2.5

assign (resid 25 and name H1 and segid A) (resid 1 and (name H7+1 or name H8+1) and segid B) 4.0 1.5 2.0
assign (resid 25 and name H8 and segid A) (resid 1 and (name H7+1 or name H8+1) and segid B) 4.0 1.5 2.0

assign (resid 26 and name H3' and segid A) (resid 1 and name H+ and segid B) 4.0 1.5 2.5
assign (resid 26 and name H1 and segid A) (resid 1 and (name H7+1 or name H8+1) and segid B) 4.0 1.5 2.5
assign (resid 26 and name H1 and segid A) (resid 1 and name H3+1 and segid B) 4.0 1.5 2.0

assign (resid 27 and name H8 and segid A) (resid 1 and (name H7+1 or name H8+1) and segid B) 3.0 1.0 3.0
assign (resid 27 and name H8 and segid A) (resid 1 and name H3+1 and segid B) 3.0 1.0 3.0
assign (resid 27 and name H8 and segid A) (resid 1 and name H4+1 and segid B) 4.0 1.5 2.0

assign (resid 28 and name H8 and segid A) (resid 1 and (name H7+1 or name H8+1) and segid B) 3.0 1.0 3.0
assign (resid 28 and name H8 and segid A) (resid 1 and name H3+1 and segid B) 3.0 1.0 3.0
assign (resid 28 and name H8 and segid A) (resid 1 and name H4+1 and segid B) 4.0 1.5 2.0
assign (resid 28 and name H1' and segid A) (resid 1 and (name H7+1 or name H8+1) and segid B) 4.0 1.5 2.5

assign (resid 29 and name H8 and segid A) (resid 1 and (name H7+1 or name H8+1) and segid B) 4.0 1.5 2.0
assign (resid 29 and name H8 and segid A) (resid 1 and name H3+1 and segid B) 4.0 1.5 2.0
assign (resid 29 and name H8 and segid A) (resid 1 and name H4+1 and segid B) 4.0 1.5 2.5

assign (resid 31 and name H5 and segid A) (resid 1 and (name H7+4 or name H8+4) and segid B) 4.0 1.5 2.0
assign (resid 31 and name H5 and segid A) (resid 1 and name H3+4 and segid B) 4.0 1.5 2.5

assign (resid 34 and name H8 and segid A) (resid 1 and (name H7+4 or name H8+4) and segid B) 4.0 1.5 2.0
assign (resid 34 and name H1' and segid A) (resid 1 and (name H7+4 or name H8+4) and segid B) 4.0 1.5 2.0

assign (resid 35 and name H1' and segid A) (resid 1 and (name H7+4 or name H8+4) and segid B) 4.0 1.5 2.0

!---------------------------------------------------------------------
!DB213 to DB213 (segid B) NOEs (26 intramolecular)
!---------------------------------------------------------------------

assign (resid 1 and name H3+1 and segid B) (resid 1 and name H+ and segid B) 3.0 1.0 3.0
assign (resid 1 and name H3+1 and segid B) (resid 1 and name H1+1 and segid B) 3.0 1.0 3.0
assign (resid 1 and name H3+1 and segid B) (resid 1 and name H4+1 and segid B) 3.0 1.0 3.0
assign (resid 1 and name H3+1 and segid B) (resid 1 and name H5+1 and segid B) 3.0 1.0 3.0
assign (resid 1 and name H3+1 and segid B) (resid 1 and (name H7+1 or name H8+1) and segid B) 4.0 1.5 2.0
assign (resid 1 and name H4+1 and segid B) (resid 1 and name H+ and segid B) 4.0 1.5 2.0
assign (resid 1 and name H4+1 and segid B) (resid 1 and name H1+1 and segid B) 4.0 1.5 2.0
assign (resid 1 and name H4+1 and segid B) (resid 1 and name H5+1 and segid B) 3.0 1.0 3.0
assign (resid 1 and name H4+1 and segid B) (resid 1 and (name H7+1 or name H8+1) and segid B) 3.0 1.0 3.0
assign (resid 1 and name H5+1 and segid B) (resid 1 and name H+ and segid B) 4.0 1.5 2.0
assign (resid 1 and name H5+1 and segid B) (resid 1 and name H1+1 and segid B) 4.0 1.5 2.0
assign (resid 1 and name H5+1 and segid B) (resid 1 and (name H7+1 or name H8+1) and segid B) 3.0 1.0 3.0
assign (resid 1 and (name H7+1 or name H8+1) and segid B) (resid 1 and name H+ and segid B) 4.0 1.5 2.0

assign (resid 1 and name H3+4 and segid B) (resid 1 and name H+ and segid B) 3.0 1.0 3.0
assign (resid 1 and name H3+4 and segid B) (resid 1 and name H1+4 and segid B) 3.0 1.0 3.0
assign (resid 1 and name H3+4 and segid B) (resid 1 and name H4+4 and segid B) 3.0 1.0 3.0
assign (resid 1 and name H3+4 and segid B) (resid 1 and name H5+4 and segid B) 3.0 1.0 3.0
assign (resid 1 and name H3+4 and segid B) (resid 1 and (name H7+4 or name H8+4) and segid B) 4.0 1.5 2.0
assign (resid 1 and name H4+4 and segid B) (resid 1 and name H+ and segid B) 4.0 1.5 2.0
assign (resid 1 and name H4+4 and segid B) (resid 1 and name H1+4 and segid B) 4.0 1.5 2.0
assign (resid 1 and name H4+4 and segid B) (resid 1 and name H5+4 and segid B) 3.0 1.0 3.0
assign (resid 1 and name H4+4 and segid B) (resid 1 and (name H7+4 or name H8+4) and segid B) 3.0 1.0 3.0
assign (resid 1 and name H5+4 and segid B) (resid 1 and name H+ and segid B) 4.0 1.5 2.0
assign (resid 1 and name H5+4 and segid B) (resid 1 and name H1+4 and segid B) 4.0 1.5 2.0
assign (resid 1 and name H5+4 and segid B) (resid 1 and (name H7+4 or name H8+4) and segid B) 3.0 1.0 3.0
assign (resid 1 and (name H7+4 or name H8+4) and segid B) (resid 1 and name H+ and segid B) 4.0 1.5 2.0

!---------------------------------------------------------------------
!RNA-RNA Non-exchangeable NOEs
!---------------------------------------------------------------------

!residue 1 intranucleotide
assign (resid 1 and name H8 and segid A) (resid 1 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 1 and name H8 and segid A) (resid 1 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 1 and name H1' and segid A) (resid 1 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 1 and name H1' and segid A) (resid 1 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 1 and name H1' and segid A) (resid 1 and name H4' and segid A) 4.0 1.0 1.0
assign (resid 1 and name H1' and segid A) (resid 1 and name H5'* and segid A) 5.0 2.0 1.25

!residue 2 intranucleotide
assign (resid 2 and name H8 and segid A) (resid 2 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 2 and name H8 and segid A) (resid 2 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 2 and name H8 and segid A) (resid 2 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 2 and name H8 and segid A) (resid 2 and name H4' and segid A) 4.0 1.0 1.0
assign (resid 2 and name H1' and segid A) (resid 2 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 2 and name H1' and segid A) (resid 2 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 2 and name H1' and segid A) (resid 2 and name H4' and segid A) 4.0 1.0 1.0

!residue 2 internucleotide
assign (resid 2 and name H8 and segid A) (resid 1 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 2 and name H8 and segid A) (resid 1 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 2 and name H8 and segid A) (resid 1 and name H2' and segid A) 3.0 1.2 0.75 !s expanded
assign (resid 2 and name H1' and segid A) (resid 1 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 2 and name H1' and segid A) (resid 1 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 2 and name H2' and segid A) (resid 1 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 2 and name H3' and segid A) (resid 1 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 2 and name H3' and segid A) (resid 1 and name H8 and segid A) 5.0 1.25 1.25

!residue 3 intranucleotide
assign (resid 3 and name H8 and segid A) (resid 3 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 3 and name H8 and segid A) (resid 3 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 3 and name H8 and segid A) (resid 3 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 3 and name H8 and segid A) (resid 3 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 3 and name H1' and segid A) (resid 3 and name H2' and segid A) 3.0 0.75 0.75

!residue 3 internucleotide
assign (resid 3 and name H8 and segid A) (resid 2 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 3 and name H8 and segid A) (resid 2 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 3 and name H8 and segid A) (resid 2 and name H2' and segid A) 3.0 1.2 0.75 !s expanded
assign (resid 3 and name H8 and segid A) (resid 2 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 3 and name H1' and segid A) (resid 2 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 3 and name H1' and segid A) (resid 2 and name H2' and segid A) 4.0 1.0 1.0

!residue 4 intranucleotide
assign (resid 4 and name H8 and segid A) (resid 4 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 4 and name H1' and segid A) (resid 4 and name H2' and segid A) 3.0 0.75 0.75
!assign (resid 4 and name H8 and segid A) (resid 4 and name H2' and segid A) 4.0 1.0 1.0 !overlap

!residue 4 internucleotide
assign (resid 4 and name H8 and segid A) (resid 3 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 4 and name H8 and segid A) (resid 3 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 4 and name H8 and segid A) (resid 3 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 4 and name H1' and segid A) (resid 3 and name H1' and segid A) 5.0 1.25 1.25
!assign (resid 4 and name H1' and segid A) (resid 3 and name H2' and segid A) 5.0 1.25 1.25 !overlap

!residue 5 intranucleotide
assign (resid 5 and name H8 and segid A) (resid 5 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 5 and name H1' and segid A) (resid 5 and name H2' and segid A) 3.0 0.75 0.75
!assign (resid 5 and name H8 and segid A) (resid 5 and name H2' and segid A) 4.0 1.0 1.0 !overlap

!residue 5 internucleotide
assign (resid 5 and name H8 and segid A) (resid 4 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 5 and name H8 and segid A) (resid 4 and name H2' and segid A) 2.0 0.2 0.5
!assign (resid 5 and name H8 and segid A) (resid 4 and name H8 and segid A) 5.0 1.25 1.25 !overlap
!assign (resid 5 and name H1' and segid A) (resid 4 and name H1' and segid A) 5.0 1.25 1.25 !overlap
!assign (resid 5 and name H1' and segid A) (resid 4 and name H2' and segid A) 5.0 1.25 1.25 !overlap

!residue 6 intranucleotide
assign (resid 6 and name H8 and segid A) (resid 6 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 6 and name H8 and segid A) (resid 6 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 6 and name H1' and segid A) (resid 6 and name H2' and segid A) 3.0 0.75 0.75

!residue 6 internucleotide
assign (resid 6 and name H8 and segid A) (resid 5 and name H8 and segid A)  5.0 1.25 1.25
assign (resid 6 and name H8 and segid A) (resid 5 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 6 and name H8 and segid A) (resid 5 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 6 and name H1' and segid A) (resid 5 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 6 and name H1' and segid A) (resid 5 and name H2' and segid A) 4.0 1.0 1.0

!residue 7  intranucleotide
assign (resid 7 and name H8 and segid A) (resid 7 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 7 and name H8 and segid A) (resid 7 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 7 and name H8 and segid A) (resid 7 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 7 and name H8 and segid A) (resid 7 and name H4' and segid A) 4.0 1.0 1.0
assign (resid 7 and name H1' and segid A) (resid 7 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 7 and name H1' and segid A) (resid 7 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 7 and name H1' and segid A) (resid 7 and name H4' and segid A) 3.0 0.75 0.75

!residue 7  internucleotide
assign (resid 7 and name H8 and segid A) (resid 6 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 7 and name H8 and segid A) (resid 6 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 7 and name H8 and segid A) (resid 6 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 7 and name H1' and segid A) (resid 6 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 7 and name H1' and segid A) (resid 6 and name H2' and segid A) 4.0 1.0 1.0

!residue 8  intranucleotide
assign (resid 8 and name H6 and segid A) (resid 8 and name H1' and segid A) 5.0 1.25 1.25 !possibly dynamic
assign (resid 8 and name H6 and segid A) (resid 8 and name H2' and segid A) 4.0 1.0 1.0 !possibly dynamic
assign (resid 8 and name H6 and segid A) (resid 8 and name H3' and segid A) 4.0 1.0 1.0 !possibly dynamic
assign (resid 8 and name H6 and segid A) (resid 8 and name H4' and segid A) 5.0 1.25 1.25 !possibly dynamic
assign (resid 8 and name H6 and segid A) (resid 8 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 8 and name H5 and segid A) (resid 8 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 8 and name H5 and segid A) (resid 8 and name H2' and segid A) 4.0 1.0 1.0 !possibly dynamic
assign (resid 8 and name H5 and segid A) (resid 8 and name H3' and segid A) 5.0 1.25 1.25
assign (resid 8 and name H1' and segid A) (resid 8 and name H2' and segid A) 4.0 1.0 1.0 !possibly dynamic
assign (resid 8 and name H1' and segid A) (resid 8 and name H3' and segid A) 5.0 1.25 1.25 !possibly dynamic
assign (resid 8 and name H1' and segid A) (resid 8 and name H4' and segid A) 4.0 1.0 1.0 !possibly dynamic
assign (resid 8 and name H1' and segid A) (resid 8 and name H5'* and segid A) 5.0 2.0 1.25

!residue 8  internucleotide
assign (resid 8 and name H6 and segid A) (resid 7 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 8 and name H6 and segid A) (resid 7 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 8 and name H6 and segid A) (resid 7 and name H2' and segid A) 3.0 1.2 0.75 !s expanded
assign (resid 8 and name H6 and segid A) (resid 7 and name H3' and segid A) 4.0 1.0 1.0 !possibly dynamic
assign (resid 8 and name H5 and segid A) (resid 7 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 8 and name H5 and segid A) (resid 7 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 8 and name H5 and segid A) (resid 7 and name H3' and segid A) 5.0 1.25 1.25
assign (resid 8 and name H5 and segid A) (resid 7 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 8 and name H1' and segid A) (resid 7 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 8 and name H1' and segid A) (resid 7 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 8 and name H5'* and segid A) (resid 7 and name H8 and segid A) 5.0 2.0 1.25 !Added in

!residue 9  intranucleotide
assign (resid 9 and name H6 and segid A) (resid 9 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 9 and name H6 and segid A) (resid 9 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 9 and name H6 and segid A) (resid 9 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 9 and name H6 and segid A) (resid 9 and name H4' and segid A) 5.0 1.25 1.25
assign (resid 9 and name H5 and segid A) (resid 9 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 9 and name H5 and segid A) (resid 9 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 9 and name H1' and segid A) (resid 9 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 9 and name H1' and segid A) (resid 9 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 9 and name H1' and segid A) (resid 9 and name H4' and segid A) 4.0 1.0 1.0

!residue 9  internucleotide
assign (resid 9 and name H5 and segid A) (resid 8 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 9 and name H5 and segid A) (resid 8 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 9 and name H5 and segid A) (resid 8 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 9 and name H5 and segid A) (resid 8 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 9 and name H6 and segid A) (resid 8 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 9 and name H6 and segid A) (resid 8 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 9 and name H6 and segid A) (resid 8 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 9 and name H6 and segid A) (resid 8 and name H5 and segid A) 5.0 1.25 1.25
!assign (resid 9 and name H1' and segid A) (resid 8 and name H1' and segid A) 5.0 1.25 1.25
!assign (resid 9 and name H6 and segid A) (resid 8 and name H1' and segid A) 4.0 1.0 1.0

!residue 10  intranucleotide
assign (resid 10 and name H6 and segid A) (resid 10 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 10 and name H6 and segid A) (resid 10 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 10 and name H6 and segid A) (resid 10 and name H4' and segid A) 5.0 1.25 1.25
assign (resid 10 and name H1' and segid A) (resid 10 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 10 and name H1' and segid A) (resid 10 and name H4' and segid A) 4.0 1.0 1.0
!assign (resid 10 and name H1' and segid A) (resid 10 and name H5 and segid A) 5.0 1.25 1.25
!assign (resid 10 and name H5 and segid A) (resid 10 and name H2' and segid A) 5.0 1.25 1.25

!residue 10  internucleotide
assign (resid 10 and name H6 and segid A) (resid 9 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 10 and name H6 and segid A) (resid 9 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 10 and name H6 and segid A) (resid 9 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 10 and name H6 and segid A) (resid 9 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 10 and name H5 and segid A) (resid 9 and name H5 and segid A) 4.0 1.0 1.0
assign (resid 10 and name H5 and segid A) (resid 9 and name H6 and segid A) 4.0 1.0 1.0
assign (resid 10 and name H5 and segid A) (resid 9 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 10 and name H5 and segid A) (resid 9 and name H2' and segid A) 3.0 0.75 0.75
!assign (resid 10 and name H1' and segid A) (resid 9 and name H2' and segid A) 4.0 1.0 1.0
!assign (resid 10 and name H1' and segid A) (resid 9 and name H1' and segid A) 5.0 1.25 1.25
!assign (resid 10 and name H6 and segid A) (resid 9 and name H6 and segid A) 5.0 1.25 1.25

!residue 11  intranucleotide
assign (resid 11 and name H8 and segid A) (resid 11 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 11 and name H8 and segid A) (resid 11 and name H2' and segid A) 4.0 1.0 1.0 
assign (resid 11 and name H1' and segid A) (resid 11 and name H2' and segid A) 3.0 0.75 0.75

!residue 11  internucleotide
assign (resid 11 and name H8 and segid A) (resid 10 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 11 and name H8 and segid A) (resid 10 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 11 and name H8 and segid A) (resid 10 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 11 and name H1' and segid A) (resid 10 and name H1' and segid A) 5.0 1.25 1.25
!assign (resid 11 and name H1' and segid A) (resid 10 and name H2' and segid A) 4.0 1.0 1.0

!residue 12  intranucleotide
assign (resid 12 and name H8 and segid A) (resid 12 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 12 and name H8 and segid A) (resid 12 and name H2' and segid A) 3.0 0.75 0.75 
assign (resid 12 and name H1' and segid A) (resid 12 and name H2' and segid A) 3.0 0.75 0.75

!residue 12  internucleotide 
assign (resid 12 and name H8 and segid A) (resid 11 and name H1' and segid A) 4.0 1.0 1.0 
assign (resid 12 and name H8 and segid A) (resid 11 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 12 and name H8 and segid A) (resid 11 and name H8 and segid A) 5.0 1.25 1.25 
assign (resid 12 and name H1' and segid A) (resid 11 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 12 and name H1' and segid A) (resid 11 and name H1' and segid A) 5.0 1.25 1.25

!residue 13  intranucleotide
assign (resid 13 and name H5 and segid A) (resid 13 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 13 and name H6 and segid A) (resid 13 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 13 and name H6 and segid A) (resid 13 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 13 and name H1' and segid A) (resid 13 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 13 and name H5 and segid A) (resid 13 and name H2' and segid A) 4.0 1.0 1.0 
 
!residue 13  internucleotide
assign (resid 13 and name H5 and segid A) (resid 12 and name H1' and segid A) 5.0 1.25 1.25  
assign (resid 13 and name H5 and segid A) (resid 12 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 13 and name H5 and segid A) (resid 12 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 13 and name H6 and segid A) (resid 12 and name H1' and segid A) 4.0 1.0 1.0 
assign (resid 13 and name H6 and segid A) (resid 12 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 13 and name H6 and segid A) (resid 12 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 13 and name H1' and segid A) (resid 12 and name H1' and segid A) 5.0 1.25 1.25 
assign (resid 13 and name H1' and segid A) (resid 12 and name H2' and segid A) 4.0 1.0 1.0 

!residue 14  intranucleotide
assign (resid 14 and name H6 and segid A) (resid 14 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 14 and name H1' and segid A) (resid 14 and name H2' and segid A) 3.0 0.75 0.75
!assign (resid 14 and name H5 and segid A) (resid 14 and name H1' and segid A) 5.0 1.25 1.25
!assign (resid 14 and name H5 and segid A) (resid 14 and name H2' and segid A) 4.0 1.0 1.0 
!assign (resid 14 and name H6 and segid A) (resid 14 and name H2' and segid A) 4.0 1.0 1.0

!residue 14  internucleotide 
assign (resid 14 and name H6 and segid A) (resid 13 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 14 and name H6 and segid A) (resid 13 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 14 and name H6 and segid A) (resid 13 and name H5 and segid A) 5.0 1.25 1.25 
assign (resid 14 and name H6 and segid A) (resid 13 and name H6 and segid A) 5.0 1.25 1.25 
assign (resid 14 and name H5 and segid A) (resid 13 and name H5 and segid A) 5.0 1.25 1.25
!assign (resid 14 and name H1' and segid A) (resid 13 and name H1' and segid A) 5.0 1.25 1.25 
!assign (resid 14 and name H1' and segid A) (resid 13 and name H2' and segid A) 4.0 1.0 1.0 
!assign (resid 14 and name H5 and segid A) (resid 13 and name H1' and segid A) 5.0 1.25 1.25  
!assign (resid 14 and name H5 and segid A) (resid 13 and name H2' and segid A) 4.0 1.0 1.0

!residue 15  intranucleotide
assign (resid 15 and name H5 and segid A) (resid 15 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 15 and name H5 and segid A) (resid 15 and name H2' and segid A) 5.0 1.25 1.25 
assign (resid 15 and name H6 and segid A) (resid 15 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 15 and name H1' and segid A) (resid 15 and name H2' and segid A) 3.0 0.75 0.75
!assign (resid 15 and name H6 and segid A) (resid 15 and name H2' and segid A) 4.0 1.0 1.0

!residue 15  internucleotide 
assign (resid 15 and name H6 and segid A) (resid 14 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 15 and name H5 and segid A) (resid 14 and name H1' and segid A) 4.0 1.0 1.0  
assign (resid 15 and name H5 and segid A) (resid 14 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 15 and name H6 and segid A) (resid 14 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 15 and name H5 and segid A) (resid 14 and name H5 and segid A) 4.0 1.0 1.0
assign (resid 15 and name H5 and segid A) (resid 14 and name H6 and segid A) 5.0 1.25 1.25 
assign (resid 15 and name H6 and segid A) (resid 14 and name H6 and segid A) 5.0 1.25 1.25 
!assign (resid 15 and name H1' and segid A) (resid 14 and name H1' and segid A) 5.0 1.25 1.25
!assign (resid 15 and name H1' and segid A) (resid 14 and name H2' and segid A) 4.0 1.0 1.0

!residue 16  intranucleotide
assign (resid 16 and name H5 and segid A) (resid 16 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 16 and name H5 and segid A) (resid 16 and name H2' and segid A) 4.0 1.0 1.0 
assign (resid 16 and name H6 and segid A) (resid 16 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 16 and name H1' and segid A) (resid 16 and name H2' and segid A) 3.0 0.75 0.75
!assign (resid 16 and name H6 and segid A) (resid 16 and name H2' and segid A) 4.0 1.0 1.0

!residue 16  internucleotide 
assign (resid 16 and name H5 and segid A) (resid 15 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 16 and name H5 and segid A) (resid 15 and name H6 and segid A) 5.0 1.25 1.25 
assign (resid 16 and name H5 and segid A) (resid 15 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 16 and name H5 and segid A) (resid 15 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 16 and name H6 and segid A) (resid 15 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 16 and name H6 and segid A) (resid 15 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 16 and name H6 and segid A) (resid 15 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 16 and name H6 and segid A) (resid 15 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 16 and name H1' and segid A) (resid 15 and name H1' and segid A) 5.0 1.25 1.25 
!assign (resid 16 and name H1' and segid A) (resid 15 and name H2' and segid A) 4.0 1.0 1.0

!residue 17   intranucleotide
assign (resid 17 and name H5 and segid A) (resid 17 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 17 and name H5 and segid A) (resid 17 and name H2' and segid A) 5.0 1.25 1.25 
assign (resid 17 and name H6 and segid A) (resid 17 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 17 and name H6 and segid A) (resid 17 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 17 and name H1' and segid A) (resid 17 and name H2' and segid A) 3.0 0.75 0.75

!residue 17   internucleotide 
assign (resid 17 and name H5 and segid A) (resid 16 and name H6 and segid A) 5.0 1.25 1.25 
assign (resid 17 and name H5 and segid A) (resid 16 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 17 and name H6 and segid A) (resid 16 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 17 and name H6 and segid A) (resid 16 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 17 and name H6 and segid A) (resid 16 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 17 and name H6 and segid A) (resid 16 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 17 and name H1' and segid A) (resid 16 and name H1' and segid A) 5.0 1.25 1.25
!assign (resid 17 and name H1' and segid A) (resid 16 and name H2' and segid A) 4.0 1.0 1.0 
!assign (resid 17 and name H5 and segid A) (resid 16 and name H5 and segid A) 5.0 1.25 1.25
!assign (resid 17 and name H5 and segid A) (resid 16 and name H1' and segid A) 4.0 1.0 1.0

!residue 18  intranucleotide
assign (resid 18 and name H5 and segid A) (resid 18 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 18 and name H5 and segid A) (resid 18 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 18 and name H5 and segid A) (resid 18 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 18 and name H5 and segid A) (resid 18 and name H4' and segid A) 5.0 1.25 1.25
assign (resid 18 and name H6 and segid A) (resid 18 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 18 and name H6 and segid A) (resid 18 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 18 and name H1' and segid A) (resid 18 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 18 and name H1' and segid A) (resid 18 and name H3' and segid A) 3.0 0.75 0.75
assign (resid 18 and name H1' and segid A) (resid 18 and name H4' and segid A) 3.0 0.75 0.75

!residue 18  internucleotide 
assign (resid 18 and name H5 and segid A) (resid 17 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 18 and name H5 and segid A) (resid 17 and name H6 and segid A) 5.0 1.25 1.25 
assign (resid 18 and name H5 and segid A) (resid 17 and name H1' and segid A) 4.0 1.0 1.0  
assign (resid 18 and name H5 and segid A) (resid 17 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 18 and name H6 and segid A) (resid 17 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 18 and name H6 and segid A) (resid 17 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 18 and name H6 and segid A) (resid 17 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 18 and name H6 and segid A) (resid 17 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 18 and name H1' and segid A) (resid 17 and name H1' and segid A) 5.0 1.25 1.25 
assign (resid 18 and name H1' and segid A) (resid 17 and name H2' and segid A) 4.0 1.0 1.0 

!residue 19  intranucleotide
assign (resid 19 and name H5 and segid A) (resid 19 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 19 and name H5 and segid A) (resid 19 and name H2' and segid A) 5.0 1.25 1.25 
assign (resid 19 and name H6 and segid A) (resid 19 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 19 and name H6 and segid A) (resid 19 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 19 and name H1' and segid A) (resid 19 and name H2' and segid A) 3.0 0.75 0.75

!residue 19  internucleotide 
assign (resid 19 and name H5 and segid A) (resid 18 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 19 and name H5 and segid A) (resid 18 and name H6 and segid A) 5.0 1.25 1.25 
assign (resid 19 and name H5 and segid A) (resid 18 and name H1' and segid A) 4.0 1.0 1.0  
assign (resid 19 and name H5 and segid A) (resid 18 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 19 and name H5 and segid A) (resid 18 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 19 and name H6 and segid A) (resid 18 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 19 and name H6 and segid A) (resid 18 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 19 and name H6 and segid A) (resid 18 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 19 and name H6 and segid A) (resid 18 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 19 and name H1' and segid A) (resid 18 and name H1' and segid A) 5.0 1.25 1.25 
!assign (resid 19 and name H1' and segid A) (resid 18 and name H2' and segid A) 4.0 1.0 1.0 

!ACAA tetraloop

!residue 20  intranucleotide
assign (resid 20 and name H8 and segid A) (resid 20 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 20 and name H8 and segid A) (resid 20 and name H2' and segid A) 4.0 1.0 1.0 
assign (resid 20 and name H8 and segid A) (resid 20 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 20 and name H8 and segid A) (resid 20 and name H4' and segid A) 4.0 1.0 1.0
assign (resid 20 and name H1' and segid A) (resid 20 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 20 and name H1' and segid A) (resid 20 and name H3' and segid A) 3.0 0.75 0.75
assign (resid 20 and name H1' and segid A) (resid 20 and name H4' and segid A) 3.0 0.75 0.75

!residue 20  internucleotide
assign (resid 20 and name H8 and segid A) (resid 18 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 20 and name H8 and segid A) (resid 19 and name H1' and segid A) 4.0 1.0 1.0 
assign (resid 20 and name H8 and segid A) (resid 19 and name H2' and segid A) 3.0 1.2 0.75 !s expanded
assign (resid 20 and name H8 and segid A) (resid 19 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 20 and name H8 and segid A) (resid 19 and name H6 and segid A) 5.0 1.25 1.25 
assign (resid 20 and name H1' and segid A) (resid 19 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 20 and name H1' and segid A) (resid 19 and name H2' and segid A) 4.0 1.0 1.0 

!residue 21  intranucleotide
assign (resid 21 and name H5 and segid A) (resid 21 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 21 and name H5 and segid A) (resid 21 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 21 and name H5 and segid A) (resid 21 and name H3' and segid A) 5.0 1.25 1.25
assign (resid 21 and name H5 and segid A) (resid 21 and name H4' and segid A) 5.0 1.25 1.25
assign (resid 21 and name H5 and segid A) (resid 21 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 21 and name H6 and segid A) (resid 21 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 21 and name H6 and segid A) (resid 21 and name H2' and segid A) 3.0 1.2 0.75 !s expanded
assign (resid 21 and name H6 and segid A) (resid 21 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 21 and name H6 and segid A) (resid 21 and name H4' and segid A) 5.0 2.0 1.25 !expanded range
assign (resid 21 and name H6 and segid A) (resid 21 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 21 and name H1' and segid A) (resid 21 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 21 and name H1' and segid A) (resid 21 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 21 and name H1' and segid A) (resid 21 and name H4' and segid A) 4.0 1.0 1.0
assign (resid 21 and name H1' and segid A) (resid 21 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 21 and name H2' and segid A) (resid 21 and name H4' and segid A) 4.0 1.0 1.0
assign (resid 21 and name H3' and segid A) (resid 21 and name H4' and segid A) 4.0 1.75 1.0 !expanded range
assign (resid 21 and name H3' and segid A) (resid 21 and name H5'* and segid A) 3.0 1.0 1.25
assign (resid 21 and name H4' and segid A) (resid 21 and name H5'* and segid A) 4.0 2.0 1.0

!residue 21  internucleotide
assign (resid 21 and name H5 and segid A) (resid 20 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 21 and name H6 and segid A) (resid 20 and name H8 and segid A) 5.0 1.25 1.25 
assign (resid 21 and name H6 and segid A) (resid 20 and name H1' and segid A) 5.0 1.25 1.25   
assign (resid 21 and name H6 and segid A) (resid 20 and name H2' and segid A) 3.0 0.75 0.75 !weakened
assign (resid 21 and name H6 and segid A) (resid 20 and name H3' and segid A) 3.0 0.75 0.75
assign (resid 21 and name H1' and segid A) (resid 20 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 21 and name H4' and segid A) (resid 20 and name H2' and segid A) 5.0 2.0 1.25 !expanded range
assign (resid 21 and name H5'* and segid A) (resid 20 and name H1' and segid A) 5.0 2.0 1.25
assign (resid 21 and name H5'* and segid A) (resid 20 and name H2' and segid A) 5.0 2.0 1.25

!residue 22  intranucleotide
assign (resid 22 and name H8 and segid A) (resid 22 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 22 and name H8 and segid A) (resid 22 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 22 and name H8 and segid A) (resid 22 and name H3' and segid A) 5.0 1.25 1.25 !H3' very weak
assign (resid 22 and name H8 and segid A) (resid 22 and name H4' and segid A) 5.0 2.0 1.25 !expanded range
assign (resid 22 and name H8 and segid A) (resid 22 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 22 and name H1' and segid A) (resid 22 and name H2' and segid A) 3.0 0.75 0.75
!assign (resid 22 and name H1' and segid A) (resid 22 and name H3' and segid A) 4.0 1.0 1.0 !H3' too weak
assign (resid 22 and name H1' and segid A) (resid 22 and name H4' and segid A) 4.0 1.0 1.0
assign (resid 22 and name H1' and segid A) (resid 22 and name H5'* and segid A) 5.0 2.0 1.25

!residue 22  internucleotide
assign (resid 22 and name H8 and segid A) (resid 20 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 22 and name H8 and segid A) (resid 21 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 22 and name H8 and segid A) (resid 21 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 22 and name H8 and segid A) (resid 21 and name H2' and segid A) 4.0 1.0 1.0 
assign (resid 22 and name H8 and segid A) (resid 21 and name H3' and segid A) 4.0 2.0 1.0 !expanded range
assign (resid 22 and name H8 and segid A) (resid 21 and name H4' and segid A) 5.0 2.0 1.25 !expanded range
assign (resid 22 and name H8 and segid A) (resid 21 and name H5'* and segid A) 5.0 2.0 1.25 !expanded range
!assign (resid 22 and name H1' and segid A) (resid 21 and name H1' and segid A) 5.0 1.25 1.25 !overlap
!assign (resid 22 and name H1' and segid A) (resid 21 and name H2' and segid A) 5.0 2.0 1.25 !removed 031110
assign (resid 22 and name H1' and segid A) (resid 21 and name H3' and segid A) 5.0 2.0 1.25 !expanded range
assign (resid 22 and name H1' and segid A) (resid 21 and name H4' and segid A) 5.0 1.25 1.25
assign (resid 22 and name H1' and segid A) (resid 21 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 22 and name H2' and segid A) (resid 21 and name H4' and segid A) 5.0 1.25 1.25
assign (resid 22 and name H2' and segid A) (resid 21 and name H5'* and segid A) 4.0 2.0 1.0
!assign (resid 22 and name H4' and segid A) (resid 21 and name H4' and segid A) 5.0 1.25 1.25 !removed 032410
!assign (resid 22 and name H4' and segid A) (resid 21 and name H5'* and segid A) 3.0 1.0 1.25 !removed 031110
!assign (resid 22 and name H5'* and segid A) (resid 21 and name H6 and segid A) 5.0 2.0 1.25 !removed 031110
assign (resid 22 and name H5'* and segid A) (resid 21 and name H1' and segid A) 5.0 2.0 1.25
assign (resid 22 and name H5'* and segid A) (resid 21 and name H2' and segid A) 5.0 2.0 1.25
assign (resid 22 and name H5'* and segid A) (resid 21 and name H3' and segid A) 5.0 2.0 1.25
assign (resid 22 and name H5'* and segid A) (resid 21 and name H4' and segid A) 5.0 2.0 1.25

!residue 23  intranucleotide
assign (resid 23 and name H8 and segid A) (resid 23 and name H1' and segid A) 3.0 0.75 0.75
assign (resid 23 and name H8 and segid A) (resid 23 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 23 and name H8 and segid A) (resid 23 and name H3' and segid A) 3.0 0.75 0.75
assign (resid 23 and name H8 and segid A) (resid 23 and name H4' and segid A) 4.0 1.0 1.0
assign (resid 23 and name H8 and segid A) (resid 23 and name H5'* and segid A) 4.0 2.0 1.0
assign (resid 23 and name H1' and segid A) (resid 23 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 23 and name H1' and segid A) (resid 23 and name H3' and segid A) 4.0 1.75 1.0 !expanded range
assign (resid 23 and name H1' and segid A) (resid 23 and name H4' and segid A) 4.0 1.75 1.0 !expanded range
assign (resid 23 and name H2' and segid A) (resid 23 and name H3' and segid A) 3.0 0.75 0.75
assign (resid 23 and name H2' and segid A) (resid 23 and name H4' and segid A) 3.0 0.75 0.75
assign (resid 23 and name H2' and segid A) (resid 23 and name H5'* and segid A) 4.0 2.0 1.0
assign (resid 23 and name H3' and segid A) (resid 23 and name H4' and segid A) 3.0 0.75 0.75
assign (resid 23 and name H3' and segid A) (resid 23 and name H5'* and segid A) 4.0 2.0 1.0

!residue 23  internucleotide
assign (resid 23 and name H8 and segid A) (resid 22 and name H8 and segid A) 5.0 1.25 1.25 !Added back in
assign (resid 23 and name H8 and segid A) (resid 22 and name H1' and segid A) 4.0 1.0 1.0 
assign (resid 23 and name H8 and segid A) (resid 22 and name H2' and segid A) 4.0 1.75 1.0 !expanded range
assign (resid 23 and name H8 and segid A) (resid 22 and name H3' and segid A) 5.0 1.25 1.25 !expanded range
assign (resid 23 and name H8 and segid A) (resid 22 and name H4' and segid A) 5.0 2.0 1.25 !expanded range
assign (resid 23 and name H8 and segid A) (resid 22 and name H5'* and segid A) 5.0 2.0 1.25 
assign (resid 23 and name H1' and segid A) (resid 21 and name H5'* and segid A) 5.0 2.0 1.25 !Added back in
assign (resid 23 and name H1' and segid A) (resid 22 and name H1' and segid A) 5.0 1.25 1.25 
assign (resid 23 and name H1' and segid A) (resid 22 and name H2' and segid A) 5.0 1.25 1.25
!assign (resid 23 and name H1' and segid A) (resid 22 and name H5'* and segid A) 5.0 2.0 1.25 !removed 032410
assign (resid 23 and name H2' and segid A) (resid 22 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 23 and name H2' and segid A) (resid 22 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 23 and name H3' and segid A) (resid 22 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 23 and name H3' and segid A) (resid 22 and name H2' and segid A) 5.0 1.25 1.25

!end tetraloop

!residue 24  intranucleotide
assign (resid 24 and name H8 and segid A) (resid 24 and name H1' and segid A) 5.0 1.25 1.25 !possibly dynamic
assign (resid 24 and name H8 and segid A) (resid 24 and name H2' and segid A) 4.0 1.0 1.0 !possibly dynamic
assign (resid 24 and name H8 and segid A) (resid 24 and name H4' and segid A) 4.0 1.0 1.0 !changed back to H4'
assign (resid 24 and name H1' and segid A) (resid 24 and name H2' and segid A) 4.0 1.0 1.0 !possibly dynamic
assign (resid 24 and name H1' and segid A) (resid 24 and name H4' and segid A) 5.0 2.0 1.25 !changed back to H4'
assign (resid 24 and name H1' and segid A) (resid 24 and name H5'* and segid A) 5.0 2.0 1.25

!residue 24  internucleotide
assign (resid 24 and name H8 and segid A) (resid 23 and name H8 and segid A) 5.0 1.25 1.25 
assign (resid 24 and name H8 and segid A) (resid 23 and name H1' and segid A) 5.0 1.25 1.25 !possibly dynamic
assign (resid 24 and name H8 and segid A) (resid 23 and name H2' and segid A) 4.0 1.0 1.0 !possibly dynamic
assign (resid 24 and name H8 and segid A) (resid 23 and name H3' and segid A) 4.0 1.0 1.0 !possibly dynamic
assign (resid 24 and name H1' and segid A) (resid 23 and name H2' and segid A) 5.0 1.25 1.25 
assign (resid 24 and name H4' and segid A) (resid 23 and name H8 and segid A) 5.0 1.25 1.25 !changed back to H4'
assign (resid 24 and name H4' and segid A) (resid 23 and name H1' and segid A) 5.0 1.25 1.25 !changed back to H4'
assign (resid 24 and name H4' and segid A) (resid 23 and name H2' and segid A) 4.0 1.0 1.0 !changed back to H4'
assign (resid 24 and name H4' and segid A) (resid 23 and name H3' and segid A) 5.0 1.25 1.25 !changed back to H4'
assign (resid 24 and name H5'* and segid A) (resid 23 and name H8 and segid A) 5.0 2.0 1.25 
assign (resid 24 and name H5'* and segid A) (resid 23 and name H1' and segid A) 5.0 2.0 1.25 
assign (resid 24 and name H5'* and segid A) (resid 23 and name H2' and segid A) 4.0 2.0 1.0
assign (resid 24 and name H5'* and segid A) (resid 23 and name H3' and segid A) 4.0 2.0 1.0
!assign (resid 24 and name H1' and segid A) (resid 23 and name H1' and segid A) 5.0 1.25 1.25

!residue 25  intranucleotide
assign (resid 25 and name H8 and segid A) (resid 25 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 25 and name H8 and segid A) (resid 25 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 25 and name H8 and segid A) (resid 25 and name H3' and segid A) 3.0 0.75 0.75
assign (resid 25 and name H8 and segid A) (resid 25 and name H4' and segid A) 4.0 1.0 1.0
assign (resid 25 and name H8 and segid A) (resid 25 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 25 and name H1' and segid A) (resid 25 and name H2' and segid A) 3.0 0.75 0.75

!residue 25  internucleotide
assign (resid 25 and name H8 and segid A) (resid 24 and name H8 and segid A) 5.0 1.25 1.25 
assign (resid 25 and name H8 and segid A) (resid 24 and name H1' and segid A) 5.0 1.25 1.25 !possibly dynamic 
assign (resid 25 and name H8 and segid A) (resid 24 and name H2' and segid A) 2.0 0.2 0.5 !possibly dynamic
assign (resid 25 and name H1' and segid A) (resid 24 and name H2' and segid A) 4.0 1.0 1.0
!assign (resid 25 and name H1' and segid A) (resid 24 and name H1' and segid A) 5.0 1.25 1.25 !not there

!residue 26  intranucleotide
assign (resid 26 and name H8 and segid A) (resid 26 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 26 and name H8 and segid A) (resid 26 and name H2' and segid A) 4.0 1.0 1.0 
assign (resid 26 and name H1' and segid A) (resid 26 and name H2' and segid A) 3.0 0.75 0.75

!residue 26  internucleotide
assign (resid 26 and name H8 and segid A) (resid 25 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 26 and name H8 and segid A) (resid 25 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 26 and name H8 and segid A) (resid 25 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 26 and name H1' and segid A) (resid 25 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 26 and name H1' and segid A) (resid 25 and name H2' and segid A) 4.0 1.0 1.0

!residue 27  intranucleotide
assign (resid 27 and name H8 and segid A) (resid 27 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 27 and name H1' and segid A) (resid 27 and name H2' and segid A) 3.0 0.75 0.75
!assign (resid 27 and name H8 and segid A) (resid 27 and name H2' and segid A) 4.0 1.0 1.0 

!residue 27  internucleotide
assign (resid 27 and name H8 and segid A) (resid 26 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 27 and name H8 and segid A) (resid 26 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 27 and name H8 and segid A) (resid 26 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 27 and name H1' and segid A) (resid 26 and name H1' and segid A) 5.0 1.25 1.25
!assign (resid 27 and name H1' and segid A) (resid 26 and name H2' and segid A) 4.0 1.0 1.0

!residue 28  intranucleotide
assign (resid 28 and name H8 and segid A) (resid 28 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 28 and name H1' and segid A) (resid 28 and name H2' and segid A) 3.0 0.75 0.75
!assign (resid 28 and name H8 and segid A) (resid 28 and name H2' and segid A) 4.0 1.0 1.0

!residue 28  internucleotide
assign (resid 28 and name H8 and segid A) (resid 27 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 28 and name H8 and segid A) (resid 27 and name H2' and segid A) 2.0 0.2 0.5
!assign (resid 28 and name H1' and segid A) (resid 27 and name H1' and segid A) 5.0 1.25 1.25
!assign (resid 28 and name H1' and segid A) (resid 27 and name H2' and segid A) 4.0 1.0 1.0
!assign (resid 28 and name H8 and segid A) (resid 27 and name H8 and segid A) 5.0 1.25 1.25

!residue 29  intranucleotide
assign (resid 29 and name H8 and segid A) (resid 29 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 29 and name H8 and segid A) (resid 29 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 29 and name H8 and segid A) (resid 29 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 29 and name H8 and segid A) (resid 29 and name H4' and segid A) 4.0 1.0 1.0
assign (resid 29 and name H8 and segid A) (resid 29 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 29 and name H1' and segid A) (resid 29 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 29 and name H1' and segid A) (resid 29 and name H3' and segid A) 3.0 0.75 0.75
assign (resid 29 and name H1' and segid A) (resid 29 and name H4' and segid A) 3.0 0.75 0.75

!residue 29  internucleotide
assign (resid 29 and name H8 and segid A) (resid 28 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 29 and name H8 and segid A) (resid 28 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 29 and name H8 and segid A) (resid 28 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 29 and name H8 and segid A) (resid 28 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 29 and name H8 and segid A) (resid 28 and name H4' and segid A) 5.0 1.25 1.25
assign (resid 29 and name H1' and segid A) (resid 28 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 29 and name H1' and segid A) (resid 28 and name H2' and segid A) 4.0 1.0 1.0

!residue 30  intranucleotide
assign (resid 30 and name H8 and segid A) (resid 30 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 30 and name H8 and segid A) (resid 30 and name H2' and segid A) 4.0 1.0 1.0 
assign (resid 30 and name H8 and segid A) (resid 30 and name H3' and segid A) 4.0 1.0 1.0 
assign (resid 30 and name H8 and segid A) (resid 30 and name H4' and segid A) 4.0 1.0 1.0 
assign (resid 30 and name H8 and segid A) (resid 30 and name H5'* and segid A) 5.0 2.0 1.25 
assign (resid 30 and name H1' and segid A) (resid 30 and name H2' and segid A) 3.0 0.75 0.75

!residue 30  internucleotide
assign (resid 30 and name H8 and segid A) (resid 29 and name H8 and segid A) 5.0 1.25 1.25 
assign (resid 30 and name H8 and segid A) (resid 29 and name H1' and segid A) 4.0 1.0 1.0 
assign (resid 30 and name H8 and segid A) (resid 29 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 30 and name H8 and segid A) (resid 29 and name H3' and segid A) 4.0 1.0 1.0 
assign (resid 30 and name H1' and segid A) (resid 29 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 30 and name H1' and segid A) (resid 29 and name H2' and segid A) 4.0 1.0 1.0

!residue 31  intranucleotide
assign (resid 31 and name H5 and segid A) (resid 31 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 31 and name H6 and segid A) (resid 31 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 31 and name H1' and segid A) (resid 31 and name H2' and segid A) 3.0 0.75 0.75
!assign (resid 31 and name H5 and segid A) (resid 31 and name H2' and segid A) 5.0 1.25 1.25 
!assign (resid 31 and name H6 and segid A) (resid 31 and name H2' and segid A) 4.0 1.0 1.0

!residue 31  internucleotide
assign (resid 31 and name H5 and segid A) (resid 30 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 31 and name H5 and segid A) (resid 30 and name H1' and segid A) 5.0 1.25 1.25 
assign (resid 31 and name H5 and segid A) (resid 30 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 31 and name H6 and segid A) (resid 30 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 31 and name H6 and segid A) (resid 30 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 31 and name H6 and segid A) (resid 30 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 31 and name H1' and segid A) (resid 30 and name H1' and segid A) 5.0 1.25 1.25 
!assign (resid 31 and name H1' and segid A) (resid 30 and name H2' and segid A) 4.0 1.0 1.0

!residue 32  intranucleotide
assign (resid 32 and name H5 and segid A) (resid 32 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 32 and name H6 and segid A) (resid 32 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 32 and name H1' and segid A) (resid 32 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 32 and name H1' and segid A) (resid 32 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 32 and name H1' and segid A) (resid 32 and name H4' and segid A) 4.0 1.0 1.0
!assign (resid 32 and name H5 and segid A) (resid 32 and name H2' and segid A) 5.0 1.25 1.25 
!assign (resid 32 and name H6 and segid A) (resid 32 and name H2' and segid A) 4.0 1.0 1.0

!residue 32  internucleotide
assign (resid 32 and name H5 and segid A) (resid 31 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 32 and name H6 and segid A) (resid 31 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 32 and name H6 and segid A) (resid 31 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 32 and name H6 and segid A) (resid 31 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 32 and name H6 and segid A) (resid 31 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 32 and name H1' and segid A) (resid 31 and name H2' and segid A) 4.0 1.0 1.0
!assign (resid 32 and name H5 and segid A) (resid 31 and name H1' and segid A) 4.0 1.0 1.0  
!assign (resid 32 and name H5 and segid A) (resid 31 and name H2' and segid A) 4.0 1.0 1.0
!assign (resid 32 and name H1' and segid A) (resid 31 and name H1' and segid A) 5.0 1.25 1.25

!residue 33  intranucleotide
assign (resid 33 and name H8 and segid A) (resid 33 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 33 and name H8 and segid A) (resid 33 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 33 and name H8 and segid A) (resid 33 and name H4' and segid A) 5.0 1.25 1.25
assign (resid 33 and name H8 and segid A) (resid 33 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 33 and name H1' and segid A) (resid 33 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 33 and name H1' and segid A) (resid 33 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 33 and name H1' and segid A) (resid 33 and name H4' and segid A) 4.0 1.0 1.0
assign (resid 33 and name H1' and segid A) (resid 33 and name H5'* and segid A) 5.0 2.0 1.25

!residue 33  internucleotide
assign (resid 33 and name H8 and segid A) (resid 32 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 33 and name H8 and segid A) (resid 32 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 33 and name H8 and segid A) (resid 32 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 33 and name H8 and segid A) (resid 32 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 33 and name H8 and segid A) (resid 32 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 33 and name H8 and segid A) (resid 32 and name H4' and segid A) 5.0 1.25 1.25
assign (resid 33 and name H1' and segid A) (resid 32 and name H1' and segid A) 5.0 1.25 1.25
!assign (resid 33 and name H1' and segid A) (resid 32 and name H2' and segid A) 5.0 1.25 1.25

!residue 34  intranucleotide
assign (resid 34 and name H8 and segid A) (resid 34 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 34 and name H8 and segid A) (resid 34 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 34 and name H8 and segid A) (resid 34 and name H3' and segid A) 5.0 1.25 1.25
assign (resid 34 and name H8 and segid A) (resid 34 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 34 and name H1' and segid A) (resid 34 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 34 and name H1' and segid A) (resid 34 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 34 and name H1' and segid A) (resid 34 and name H4' and segid A) 4.0 1.0 1.0
assign (resid 34 and name H1' and segid A) (resid 34 and name H5'* and segid A) 5.0 2.0 1.25

!residue 34  internucleotide
assign (resid 34 and name H8 and segid A) (resid 33 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 34 and name H8 and segid A) (resid 33 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 34 and name H8 and segid A) (resid 33 and name H2' and segid A) 3.0 1.2 0.75 !overlapped - expand lower range
assign (resid 34 and name H1' and segid A) (resid 33 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 34 and name H1' and segid A) (resid 33 and name H2' and segid A) 5.0 1.25 1.25

!---start bulge---!

!residue 35  intranucleotide
assign (resid 35 and name H8 and segid A) (resid 35 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 35 and name H8 and segid A) (resid 35 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 35 and name H8 and segid A) (resid 35 and name H3' and segid A) 5.0 1.25 1.25
assign (resid 35 and name H1' and segid A) (resid 35 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 35 and name H1' and segid A) (resid 35 and name H3' and segid A) 4.0 1.0 1.0

!residue 35  internucleotide
assign (resid 35 and name H8 and segid A) (resid 34 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 35 and name H8 and segid A) (resid 34 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 35 and name H8 and segid A) (resid 34 and name H2' and segid A) 4.0 1.0 1.0 !possibly dynamic
assign (resid 35 and name H8 and segid A) (resid 34 and name H3' and segid A) 5.0 1.25 1.25
!assign (resid 35 and name H1' and segid A) (resid 34 and name H1' and segid A) 5.0 1.25 1.25 !overlap with diagonal
!assign (resid 35 and name H1' and segid A) (resid 34 and name H2' and segid A) 4.0 1.0 1.0 !overlap

!residue 36  intranucleotide
assign (resid 36 and name H8 and segid A) (resid 36 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 36 and name H8 and segid A) (resid 36 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 36 and name H8 and segid A) (resid 36 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 36 and name H8 and segid A) (resid 36 and name H4' and segid A) 5.0 1.25 1.25
assign (resid 36 and name H8 and segid A) (resid 36 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 36 and name H1' and segid A) (resid 36 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 36 and name H1' and segid A) (resid 36 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 36 and name H1' and segid A) (resid 36 and name H4' and segid A) 5.0 1.25 1.25
assign (resid 36 and name H1' and segid A) (resid 36 and name H5'* and segid A) 5.0 2.0 1.25

!residue 36  internucleotide
assign (resid 36 and name H8 and segid A) (resid 35 and name H1' and segid A) 5.0 1.25 1.25 !possibly dynamic
assign (resid 36 and name H8 and segid A) (resid 35 and name H2' and segid A) 5.0 1.25 1.25 !possibly dynamic
assign (resid 36 and name H8 and segid A) (resid 35 and name H3' and segid A) 5.0 1.25 1.25 !possibly dynamic
assign (resid 36 and name H8 and segid A) (resid 35 and name H5'* and segid A) 5.0 2.0 1.25 !possibly dynamic
!assign (resid 36 and name H8 and segid A) (resid 35 and name H8 and segid A) 5.0 1.25 1.25 !not there
!assign (resid 36 and name H1' and segid A) (resid 35 and name H1' and segid A) 5.0 1.25 1.25 !overlap
!assign (resid 36 and name H1' and segid A) (resid 35 and name H2' and segid A) 4.0 1.0 1.0 !overlap

!residue 37  intranucleotide
assign (resid 37 and name H8 and segid A) (resid 37 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 37 and name H8 and segid A) (resid 37 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 37 and name H8 and segid A) (resid 37 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 37 and name H8 and segid A) (resid 37 and name H4' and segid A) 5.0 1.25 1.25
assign (resid 37 and name H8 and segid A) (resid 37 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 37 and name H1' and segid A) (resid 37 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 37 and name H1' and segid A) (resid 37 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 37 and name H1' and segid A) (resid 37 and name H4' and segid A) 4.0 1.0 1.0

!residue 37  internucleotide
assign (resid 37 and name H8 and segid A) (resid 35 and name H1' and segid A) 5.0 1.25 1.25 !very weak...
assign (resid 37 and name H8 and segid A) (resid 36 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 37 and name H8 and segid A) (resid 36 and name H1' and segid A) 5.0 1.25 1.25 !possibly dynamic
assign (resid 37 and name H8 and segid A) (resid 36 and name H2' and segid A) 4.0 1.0 1.0 !possibly dynamic
assign (resid 37 and name H8 and segid A) (resid 36 and name H3' and segid A) 4.0 1.0 1.0 !possibly dynamic
assign (resid 37 and name H8 and segid A) (resid 36 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 37 and name H1' and segid A) (resid 36 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 37 and name H1' and segid A) (resid 36 and name H2' and segid A) 5.0 1.25 1.25 !possibly dynamic

!---end bulge---!

!residue 38  intranucleotide
assign (resid 38 and name H8 and segid A) (resid 38 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 38 and name H8 and segid A) (resid 38 and name H2' and segid A) 3.0 0.75 0.75 !made stronger
assign (resid 38 and name H8 and segid A) (resid 38 and name H3' and segid A) 5.0 1.25 1.25
assign (resid 38 and name H8 and segid A) (resid 38 and name H4' and segid A) 5.0 1.25 1.25
assign (resid 38 and name H8 and segid A) (resid 38 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 38 and name H1' and segid A) (resid 38 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 38 and name H1' and segid A) (resid 38 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 38 and name H1' and segid A) (resid 38 and name H4' and segid A) 4.0 1.0 1.0
assign (resid 38 and name H1' and segid A) (resid 38 and name H5'* and segid A) 5.0 2.0 1.25

!residue 38  internucleotide
assign (resid 38 and name H8 and segid A) (resid 36 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 38 and name H8 and segid A) (resid 37 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 38 and name H8 and segid A) (resid 37 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 38 and name H8 and segid A) (resid 37 and name H2' and segid A) 5.0 1.25 1.25 !possibly dynamic
assign (resid 38 and name H8 and segid A) (resid 37 and name H4' and segid A) 5.0 1.25 1.25
assign (resid 38 and name H1' and segid A) (resid 37 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 38 and name H1' and segid A) (resid 37 and name H2' and segid A) 4.0 1.0 1.0

!residue 39  intranucleotide
assign (resid 39 and name H5 and segid A) (resid 39 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 39 and name H5 and segid A) (resid 39 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 39 and name H5 and segid A) (resid 39 and name H3' and segid A) 5.0 1.25 1.25
assign (resid 39 and name H5 and segid A) (resid 39 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 39 and name H6 and segid A) (resid 39 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 39 and name H6 and segid A) (resid 39 and name H3' and segid A) 4.0 1.0 1.0
assign (resid 39 and name H6 and segid A) (resid 39 and name H4' and segid A) 4.0 1.0 1.0
assign (resid 39 and name H6 and segid A) (resid 39 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 39 and name H1' and segid A) (resid 39 and name H2' and segid A) 3.0 0.75 0.75
assign (resid 39 and name H1' and segid A) (resid 39 and name H3' and segid A) 3.0 0.75 0.75
assign (resid 39 and name H1' and segid A) (resid 39 and name H4' and segid A) 4.0 1.0 1.0
assign (resid 39 and name H1' and segid A) (resid 39 and name H5'* and segid A) 5.0 2.0 1.25
!assign (resid 39 and name H6 and segid A) (resid 39 and name H2' and segid A) 4.0 1.0 1.0

!residue 39  internucleotide
assign (resid 39 and name H5 and segid A) (resid 38 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 39 and name H5 and segid A) (resid 38 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 39 and name H5 and segid A) (resid 38 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 39 and name H5 and segid A) (resid 38 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 39 and name H6 and segid A) (resid 38 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 39 and name H6 and segid A) (resid 38 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 39 and name H6 and segid A) (resid 38 and name H2' and segid A) 3.0 0.75 0.75 !overlap
assign (resid 39 and name H6 and segid A) (resid 38 and name H3' and segid A) 5.0 1.25 1.25
assign (resid 39 and name H1' and segid A) (resid 38 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 39 and name H1' and segid A) (resid 38 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 39 and name H1' and segid A) (resid 38 and name H3' and segid A) 5.0 1.25 1.25

!residue 40  intranucleotide
assign (resid 40 and name H5 and segid A) (resid 40 and name H1' and segid A) 5.0 1.25 1.25 !overlap
assign (resid 40 and name H6 and segid A) (resid 40 and name H1' and segid A) 4.0 1.0 1.0 !overlap
assign (resid 40 and name H6 and segid A) (resid 40 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 40 and name H1' and segid A) (resid 40 and name H2' and segid A) 3.0 0.75 0.75

!residue 40  internucleotide
assign (resid 40 and name H5 and segid A) (resid 39 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 40 and name H5 and segid A) (resid 39 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 40 and name H5 and segid A) (resid 39 and name H1' and segid A) 4.0 1.0 1.0 !overlap
assign (resid 40 and name H5 and segid A) (resid 39 and name H2' and segid A) 3.0 0.75 0.75 !overlap
assign (resid 40 and name H6 and segid A) (resid 39 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 40 and name H6 and segid A) (resid 39 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 40 and name H6 and segid A) (resid 39 and name H1' and segid A) 4.0 1.0 1.0 !overlap
assign (resid 40 and name H6 and segid A) (resid 39 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 40 and name H1' and segid A) (resid 39 and name H2' and segid A) 4.0 1.0 1.0 !overlap
!assign (resid 40 and name H1' and segid A) (resid 39 and name H1' and segid A) 5.0 1.25 1.25

!residue 41  intranucleotide
assign (resid 41 and name H5 and segid A) (resid 41 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 41 and name H6 and segid A) (resid 41 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 41 and name H1' and segid A) (resid 41 and name H2' and segid A) 3.0 0.75 0.75
!assign (resid 41 and name H6 and segid A) (resid 41 and name H2' and segid A) 4.0 1.0 1.0

!residue 41  internucleotide
assign (resid 41 and name H5 and segid A) (resid 40 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 41 and name H5 and segid A) (resid 40 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 41 and name H5 and segid A) (resid 40 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 41 and name H6 and segid A) (resid 40 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 41 and name H6 and segid A) (resid 40 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 41 and name H1' and segid A) (resid 40 and name H1' and segid A) 4.0 1.0 1.0
!assign (resid 41 and name H6 and segid A) (resid 40 and name H6 and segid A) 5.0 1.25 1.25
!assign (resid 41 and name H1' and segid A) (resid 40 and name H2' and segid A) 4.0 1.0 1.0

!residue 42  intranucleotide
assign (resid 42 and name H5 and segid A) (resid 42 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 42 and name H6 and segid A) (resid 42 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 42 and name H6 and segid A) (resid 42 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 42 and name H1' and segid A) (resid 42 and name H2' and segid A) 3.0 0.75 0.75

!residue 42  internucleotide
assign (resid 42 and name H5 and segid A) (resid 41 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 42 and name H5 and segid A) (resid 41 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 42 and name H5 and segid A) (resid 41 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 42 and name H6 and segid A) (resid 41 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 42 and name H6 and segid A) (resid 41 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 42 and name H6 and segid A) (resid 41 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 42 and name H6 and segid A) (resid 41 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 42 and name H1' and segid A) (resid 41 and name H1' and segid A) 4.0 1.0 1.0
!assign (resid 42 and name H1' and segid A) (resid 41 and name H2' and segid A) 4.0 1.0 1.0

!residue 43  intranucleotide
assign (resid 43 and name H5 and segid A) (resid 43 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 43 and name H5 and segid A) (resid 43 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 43 and name H6 and segid A) (resid 43 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 43 and name H6 and segid A) (resid 43 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 43 and name H1' and segid A) (resid 43 and name H2' and segid A) 3.0 0.75 0.75

!residue 43  internucleotide
assign (resid 43 and name H5 and segid A) (resid 42 and name H5 and segid A) 4.0 1.0 1.0
assign (resid 43 and name H5 and segid A) (resid 42 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 43 and name H5 and segid A) (resid 42 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 43 and name H6 and segid A) (resid 42 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 43 and name H6 and segid A) (resid 42 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 43 and name H6 and segid A) (resid 42 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 43 and name H6 and segid A) (resid 42 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 43 and name H1' and segid A) (resid 42 and name H1' and segid A) 5.0 1.25 1.25
!assign (resid 43 and name H5 and segid A) (resid 42 and name H1' and segid A) 5.0 1.25 1.25
!assign (resid 43 and name H1' and segid A) (resid 42 and name H2' and segid A) 4.0 1.0 1.0

!residue 44  intranucleotide
assign (resid 44 and name H6 and segid A) (resid 44 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 44 and name H6 and segid A) (resid 44 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 44 and name H1' and segid A) (resid 44 and name H2' and segid A) 3.0 0.75 0.75
!assign (resid 44 and name H5 and segid A) (resid 44 and name H1' and segid A) 5.0 1.25 1.25
!assign (resid 44 and name H5 and segid A) (resid 44 and name H2' and segid A) 5.0 1.25 1.25

!residue 44  internucleotide
assign (resid 44 and name H5 and segid A) (resid 43 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 44 and name H5 and segid A) (resid 43 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 44 and name H5 and segid A) (resid 43 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 44 and name H6 and segid A) (resid 43 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 44 and name H6 and segid A) (resid 43 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 44 and name H6 and segid A) (resid 43 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 44 and name H6 and segid A) (resid 43 and name H2' and segid A) 2.0 0.2 0.5
assign (resid 44 and name H1' and segid A) (resid 43 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 44 and name H1' and segid A) (resid 43 and name H2' and segid A) 4.0 1.0 1.0

!residue 45  intranucleotide
assign (resid 45 and name H5 and segid A) (resid 45 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 45 and name H5 and segid A) (resid 45 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 45 and name H6 and segid A) (resid 45 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 45 and name H6 and segid A) (resid 45 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 45 and name H1' and segid A) (resid 45 and name H2' and segid A) 3.0 0.75 0.75

!residue 45  internucleotide
assign (resid 45 and name H5 and segid A) (resid 44 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 45 and name H5 and segid A) (resid 44 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 45 and name H6 and segid A) (resid 44 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 45 and name H6 and segid A) (resid 44 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 45 and name H6 and segid A) (resid 44 and name H2' and segid A) 3.0 1.2 0.75 !s expanded
assign (resid 45 and name H1' and segid A) (resid 44 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 45 and name H1' and segid A) (resid 44 and name H2' and segid A) 5.0 1.25 1.25
!assign (resid 45 and name H5 and segid A) (resid 44 and name H5 and segid A) 5.0 1.25 1.25
!assign (resid 45 and name H5 and segid A) (resid 44 and name H1' and segid A) 5.0 1.25 1.25
!assign (resid 45 and name H6 and segid A) (resid 44 and name H5 and segid A) 5.0 1.25 1.25

!--------------------------------------------------------------------------------
!RNA-RNA AH2 NOEs (Non-exchangable)
!--------------------------------------------------------------------------------

!residue 4
assign (resid 4 and name H2 and segid A) (resid 4 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 4 and name H2 and segid A) (resid 5 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 4 and name H2 and segid A) (resid 43 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 4 and name H2 and segid A) (resid 42 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 4 and name H2 and segid A) (resid 5 and name H8 and segid A) 4.0 1.0 1.0
assign (resid 4 and name H2 and segid A) (resid 5 and name H2 and segid A) 4.0 1.0 1.0

!residue 5
assign (resid 5 and name H2 and segid A) (resid 5 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 5 and name H2 and segid A) (resid 6 and name H1' and segid A) 3.0 0.75 0.75
assign (resid 5 and name H2 and segid A) (resid 42 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 5 and name H2 and segid A) (resid 6 and name H8 and segid A) 5.0 1.25 1.25

!residue 7
assign (resid 7 and name H2 and segid A) (resid 7 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 7 and name H2 and segid A) (resid 8 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 7 and name H2 and segid A) (resid 38 and name H2 and segid A) 4.0 1.0 1.0

!residue 20
assign (resid 20 and name H2 and segid A) (resid 20 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 20 and name H2 and segid A) (resid 21 and name H1' and segid A) 5.0 1.25 1.25
!assign (resid 20 and name H2 and segid A) (resid 21 and name H2' and segid A) 4.0 1.0 1.0 !removed
assign (resid 20 and name H2 and segid A) (resid 22 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 20 and name H2 and segid A) (resid 23 and name H8 and segid A) 5.0 1.25 1.25

!residue 22
!assign (resid 22 and name H2 and segid A) (resid 20 and name H2' and segid A) 5.0 1.25 1.25 !removed 031910
assign (resid 22 and name H2 and segid A) (resid 21 and name H4' and segid A) 5.0 1.25 1.25 !Added back in
assign (resid 22 and name H2 and segid A) (resid 21 and name H5'* and segid A) 5.0 2.0 1.25
assign (resid 22 and name H2 and segid A) (resid 22 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 22 and name H2 and segid A) (resid 22 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 22 and name H2 and segid A) (resid 23 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 22 and name H2 and segid A) (resid 23 and name H2 and segid A) 5.0 1.25 1.25
assign (resid 22 and name H2 and segid A) (resid 23 and name H4' and segid A) 5.0 1.25 1.25

!residue 23
assign (resid 23 and name H2 and segid A) (resid 20 and name H2 and segid A) 5.0 1.25 1.25
assign (resid 23 and name H2 and segid A) (resid 20 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 23 and name H2 and segid A) (resid 20 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 23 and name H2 and segid A) (resid 21 and name H3' and segid A) 5.0 1.25 1.25
assign (resid 23 and name H2 and segid A) (resid 21 and name H4' and segid A) 5.0 1.25 1.25 !Added back in
assign (resid 23 and name H2 and segid A) (resid 21 and name H5'* and segid A) 5.0 2.0 1.25
!assign (resid 23 and name H2 and segid A) (resid 22 and name H4' and segid A) 5.0 1.25 1.25 !removed 031110
assign (resid 23 and name H2 and segid A) (resid 23 and name H2' and segid A) 5.0 1.25 1.25
!assign (resid 23 and name H2 and segid A) (resid 23 and name H3' and segid A) 5.0 1.25 1.25 !removed 031110
assign (resid 23 and name H2 and segid A) (resid 24 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 23 and name H2 and segid A) (resid 24 and name H1' and segid A) 5.0 2.0 1.25 !Added in although overlap
assign (resid 23 and name H2 and segid A) (resid 24 and name H2' and segid A) 5.0 1.25 1.25

!residue 27
assign (resid 27 and name H2 and segid A) (resid 27 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 27 and name H2 and segid A) (resid 28 and name H1' and segid A) 3.0 0.75 0.75
assign (resid 27 and name H2 and segid A) (resid 17 and name H1' and segid A) 3.0 0.75 0.75
assign (resid 27 and name H2 and segid A) (resid 16 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 27 and name H2 and segid A) (resid 28 and name H2 and segid A) 4.0 1.0 1.0
assign (resid 27 and name H2 and segid A) (resid 28 and name H8 and segid A) 4.0 1.0 1.0
!assign (resid 27 and name H2 and segid A) (resid 29 and name H8 and segid A) 5.0 1.25 1.25

!residue 28
assign (resid 28 and name H2 and segid A) (resid 28 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 28 and name H2 and segid A) (resid 15 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 28 and name H2 and segid A) (resid 16 and name H1' and segid A) 3.0 0.75 0.75
assign (resid 28 and name H2 and segid A) (resid 29 and name H1' and segid A) 3.0 0.75 0.75
assign (resid 28 and name H2 and segid A) (resid 29 and name H8 and segid A) 5.0 1.25 1.25
!assign (resid 28 and name H2 and segid A) (resid 30 and name H8 and segid A) 5.0 1.25 1.25

!residue 33
assign (resid 33 and name H2 and segid A) (resid 33 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 33 and name H2 and segid A) (resid 33 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 33 and name H2 and segid A) (resid 34 and name H1' and segid A) 3.0 0.75 0.75
assign (resid 33 and name H2 and segid A) (resid 34 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 33 and name H2 and segid A) (resid 10 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 33 and name H2 and segid A) (resid 11 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 33 and name H2 and segid A) (resid 11 and name H8 and segid A) 5.0 1.25 1.25
!assign (resid 33 and name H2 and segid A) (resid 12 and name H8 and segid A) 5.0 1.25 1.25

!residue 37
assign (resid 37 and name H2 and segid A) (resid 37 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 37 and name H2 and segid A) (resid 10 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 37 and name H2 and segid A) (resid 38 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 37 and name H2 and segid A) (resid 38 and name H2 and segid A) 4.0 1.0 1.0

!residue 38
assign (resid 38 and name H2 and segid A) (resid 8  and name H2' and segid A) 5.0 1.25 1.25
assign (resid 38 and name H2 and segid A) (resid 9  and name H1' and segid A) 5.0 1.25 1.25
assign (resid 38 and name H2 and segid A) (resid 9  and name H4' and segid A) 5.0 1.25 1.25
assign (resid 38 and name H2 and segid A) (resid 38 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 38 and name H2 and segid A) (resid 39 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 38 and name H2 and segid A) (resid 39 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 38 and name H2 and segid A) (resid 39 and name H3' and segid A) 5.0 1.25 1.25
assign (resid 38 and name H2 and segid A) (resid 39 and name H6 and segid A) 5.0 1.25 1.25

!-----------------------------------------------------------------------
!RNA-RNA Exchangeable NOEs
!-----------------------------------------------------------------------
!NOTE; CNS REVERSES AMINO PROTON NAMES SO AMINO DISTANCES ARE REVERSED

!residue 1
assign (resid 1 and name H1 and segid A) (resid 1 and name H21 and segid A) 5.0 1.25 1.25
assign (resid 1 and name H1 and segid A) (resid 45 and name H41 and segid A) 4.0 1.0 1.0
assign (resid 1 and name H1 and segid A) (resid 45 and name H42 and segid A) 4.0 1.0 1.0
!assign (resid 1 and name H1 and segid A) (resid 2 and name H1 and segid A) 4.0 1.0 1.0
!assign (resid 1 and name H1 and segid A) (resid 1 and name H22 and segid A) 5.0 1.25 1.25

!residue 2
assign (resid 2 and name H1 and segid A) (resid 3 and name H1 and segid A) 5.0 1.25 1.25
assign (resid 2 and name H1 and segid A) (resid 3 and name H1' and segid A) 3.0 0.75 0.75
assign (resid 2 and name H1 and segid A) (resid 2 and name H22 and segid A) 3.0 0.75 0.75
assign (resid 2 and name H1 and segid A) (resid 2 and name H21 and segid A) 3.0 0.75 0.75
assign (resid 2 and name H1 and segid A) (resid 44 and name H41 and segid A) 3.0 0.75 0.75
assign (resid 2 and name H1 and segid A) (resid 44 and name H42 and segid A) 3.0 0.75 0.75

!residue 3
assign (resid 3 and name H1 and segid A) (resid 42 and name H3 and segid A) 5.0 1.25 1.25
assign (resid 3 and name H1 and segid A) (resid 43 and name H5 and segid A) 4.0 1.0 1.0
assign (resid 3 and name H1 and segid A) (resid 44 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 3 and name H1 and segid A) (resid 4 and name H2 and segid A) 4.0 1.0 1.0
assign (resid 3 and name H1 and segid A) (resid 4 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 3 and name H1 and segid A) (resid 4 and name H62 and segid A) 4.0 1.0 1.0
assign (resid 3 and name H1 and segid A) (resid 3 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 3 and name H1 and segid A) (resid 3 and name H22 and segid A) 3.0 0.75 0.75
assign (resid 3 and name H1 and segid A) (resid 43 and name H41 and segid A) 3.0 0.75 0.75
assign (resid 3 and name H1 and segid A) (resid 43 and name H42 and segid A) 3.0 0.75 0.75
!assign (resid 3 and name H1 and segid A) (resid 3 and name H21 and segid A) 4.0 1.0 1.0

!residue 6
assign (resid 6 and name H1 and segid A) (resid 41 and name H3 and segid A) 4.0 1.0 1.0
assign (resid 6 and name H1 and segid A) (resid 5 and name H2 and segid A) 5.0 1.25 1.25
assign (resid 6 and name H1 and segid A) (resid 5 and name H62 and segid A) 3.0 0.75 0.75
assign (resid 6 and name H1 and segid A) (resid 7 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 6 and name H1 and segid A) (resid 40 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 6 and name H1 and segid A) (resid 6 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 6 and name H1 and segid A) (resid 41 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 6 and name H1 and segid A) (resid 6 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 6 and name H1 and segid A) (resid 6 and name H22 and segid A) 3.0 0.75 0.75
assign (resid 6 and name H1 and segid A) (resid 6 and name H21 and segid A) 3.0 0.75 0.75
assign (resid 6 and name H1 and segid A) (resid 40 and name H41 and segid A) 3.0 0.75 0.75
assign (resid 6 and name H1 and segid A) (resid 40 and name H42 and segid A) 3.0 0.75 0.75
!assign (resid 6 and name H1 and segid A) (resid 39 and name H3 and segid A) 4.0 1.0 1.0

!residue 8

!residue 10
assign (resid 10 and name H3 and segid A) (resid 11 and name H1 and segid A) 5.0 1.25 1.25
assign (resid 10 and name H3 and segid A) (resid 10 and name H5 and segid A) 4.0 1.0 1.0
assign (resid 10 and name H3 and segid A) (resid 11 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 10 and name H3 and segid A) (resid 10 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 10 and name H3 and segid A) (resid 34 and name H1 and segid A) 5.0 1.25 1.25
assign (resid 10 and name H3 and segid A) (resid 33 and name H62 and segid A) 4.0 1.75 2.25 !m expanded
assign (resid 10 and name H3 and segid A) (resid 33 and name H61 and segid A) 4.0 1.75 2.25 !m expanded
assign (resid 10 and name H3 and segid A) (resid 32 and name H42 and segid A) 5.0 1.25 1.25
assign (resid 10 and name H3 and segid A) (resid 33 and name H2 and segid A) 3.0 0.75 0.75

!residue 11
assign (resid 11 and name H1 and segid A) (resid 12 and name H1 and segid A) 5.0 1.25 1.25
assign (resid 11 and name H1 and segid A) (resid 32 and name H5 and segid A) 4.0 1.0 1.0
assign (resid 11 and name H1 and segid A) (resid 12 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 11 and name H1 and segid A) (resid 31 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 11 and name H1 and segid A) (resid 11 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 11 and name H1 and segid A) (resid 31 and name H42 and segid A) 5.0 1.25 1.25
assign (resid 11 and name H1 and segid A) (resid 11 and name H22 and segid A) 3.0 0.75 0.75
assign (resid 11 and name H1 and segid A) (resid 11 and name H21 and segid A) 4.0 1.0 1.0
assign (resid 11 and name H1 and segid A) (resid 32 and name H41 and segid A) 3.0 0.75 0.75
assign (resid 11 and name H1 and segid A) (resid 32 and name H42 and segid A) 3.0 0.75 0.75

!residue 12
assign (resid 12 and name H1 and segid A) (resid 31 and name H6 and segid A) 5.0 1.25 1.25
assign (resid 12 and name H1 and segid A) (resid 13 and name H5 and segid A) 4.0 1.0 1.0
assign (resid 12 and name H1 and segid A) (resid 12 and name H22 and segid A) 3.0 0.75 0.75
assign (resid 12 and name H1 and segid A) (resid 12 and name H21 and segid A) 3.0 0.75 0.75
assign (resid 12 and name H1 and segid A) (resid 31 and name H41 and segid A) 3.0 0.75 0.75
assign (resid 12 and name H1 and segid A) (resid 31 and name H42 and segid A) 3.0 0.75 0.75
!assign (resid 12 and name H1 and segid A) (resid 30 and name H1 and segid A) 4.0 1.0 1.0

!residue 15
assign (resid 15 and name H3 and segid A) (resid 16 and name H3 and segid A) 4.0 1.0 1.0
assign (resid 15 and name H3 and segid A) (resid 29 and name H1 and segid A) 4.0 1.0 1.0
assign (resid 15 and name H3 and segid A) (resid 14 and name H42 and segid A) 5.0 1.25 1.25
assign (resid 15 and name H3 and segid A) (resid 29 and name H22 and segid A) 5.0 1.25 1.25
assign (resid 15 and name H3 and segid A) (resid 14 and name H41 and segid A) 5.0 1.25 1.25
assign (resid 15 and name H3 and segid A) (resid 29 and name H21 and segid A) 5.0 1.25 1.25
assign (resid 15 and name H3 and segid A) (resid 15 and name H5 and segid A) 4.0 1.0 1.0
assign (resid 15 and name H3 and segid A) (resid 15 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 15 and name H3 and segid A) (resid 28 and name H62 and segid A) 3.0 0.75 0.75
assign (resid 15 and name H3 and segid A) (resid 28 and name H61 and segid A) 3.0 0.75 0.75
assign (resid 15 and name H3 and segid A) (resid 27 and name H2 and segid A) 5.0 1.25 1.25
assign (resid 15 and name H3 and segid A) (resid 28 and name H2 and segid A) 3.0 0.75 0.75

!residue 16
assign (resid 16 and name H3 and segid A) (resid 26 and name H1 and segid A) 4.0 1.0 1.0
assign (resid 16 and name H3 and segid A) (resid 27 and name H62 and segid A) 3.0 0.75 0.75
assign (resid 16 and name H3 and segid A) (resid 27 and name H61 and segid A) 3.0 0.75 0.75
assign (resid 16 and name H3 and segid A) (resid 27 and name H2 and segid A) 3.0 0.75 0.75
assign (resid 16 and name H3 and segid A) (resid 28 and name H2 and segid A) 4.0 1.0 1.0
assign (resid 16 and name H3 and segid A) (resid 28 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 16 and name H3 and segid A) (resid 16 and name H5 and segid A) 4.0 1.0 1.0
assign (resid 16 and name H3 and segid A) (resid 15 and name H5 and segid A) 5.0 1.25 1.25

!residue 24
assign (resid 24 and name H1 and segid A) (resid 25 and name H1 and segid A) 5.0 1.25 1.25
assign (resid 24 and name H1 and segid A) (resid 24 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 24 and name H1 and segid A) (resid 24 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 24 and name H1 and segid A) (resid 24 and name H22 and segid A) 3.0 0.75 0.75
assign (resid 24 and name H1 and segid A) (resid 24 and name H21 and segid A) 3.0 0.75 0.75
assign (resid 24 and name H1 and segid A) (resid 19 and name H41 and segid A) 3.0 0.75 0.75
assign (resid 24 and name H1 and segid A) (resid 19 and name H42 and segid A) 3.0 0.75 0.75

!residue 25
assign (resid 25 and name H1 and segid A) (resid 26 and name H1 and segid A) 4.0 1.0 1.0
assign (resid 25 and name H1 and segid A) (resid 26 and name H8 and segid A) 5.0 1.25 1.25
assign (resid 25 and name H1 and segid A) (resid 26 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 25 and name H1 and segid A) (resid 25 and name H21 and segid A) 3.0 0.75 0.75
assign (resid 25 and name H1 and segid A) (resid 25 and name H22 and segid A) 3.0 0.75 0.75
assign (resid 25 and name H1 and segid A) (resid 18 and name H41 and segid A) 3.0 0.75 0.75
assign (resid 25 and name H1 and segid A) (resid 18 and name H42 and segid A) 3.0 0.75 0.75

!residue 26
assign (resid 26 and name H1 and segid A) (resid 26 and name H22 and segid A) 3.0 0.75 0.75
assign (resid 26 and name H1 and segid A) (resid 26 and name H21 and segid A) 4.0 1.0 1.0
assign (resid 26 and name H1 and segid A) (resid 17 and name H41 and segid A) 3.0 0.75 0.75
assign (resid 26 and name H1 and segid A) (resid 17 and name H42 and segid A) 3.0 0.75 0.75
assign (resid 26 and name H1 and segid A) (resid 27 and name H62 and segid A) 3.0 0.75 0.75
assign (resid 26 and name H1 and segid A) (resid 27 and name H2 and segid A) 4.0 1.0 1.0
assign (resid 26 and name H1 and segid A) (resid 18 and name H41 and segid A) 4.0 1.0 1.0
assign (resid 26 and name H1 and segid A) (resid 27 and name H61 and segid A) 5.0 1.25 1.25
assign (resid 26 and name H1 and segid A) (resid 17 and name H5 and segid A) 4.0 1.0 1.0
assign (resid 26 and name H1 and segid A) (resid 26 and name H2' and segid A) 5.0 1.25 1.25
assign (resid 26 and name H1 and segid A) (resid 18 and name H1' and segid A) 4.0 1.0 1.0

!residue 29
assign (resid 29 and name H1 and segid A) (resid 29 and name H22 and segid A) 3.0 0.75 0.75
assign (resid 29 and name H1 and segid A) (resid 29 and name H21 and segid A) 4.0 1.0 1.0
assign (resid 29 and name H1 and segid A) (resid 14 and name H41 and segid A) 3.0 0.75 0.75
assign (resid 29 and name H1 and segid A) (resid 14 and name H42 and segid A) 3.0 0.75 0.75
assign (resid 29 and name H1 and segid A) (resid 28 and name H61 and segid A) 5.0 1.25 1.25
assign (resid 29 and name H1 and segid A) (resid 28 and name H2 and segid A) 5.0 1.25 1.25
assign (resid 29 and name H1 and segid A) (resid 30 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 29 and name H1 and segid A) (resid 14 and name H5 and segid A) 4.0 1.0 1.0
assign (resid 29 and name H1 and segid A) (resid 29 and name H2' and segid A) 5.0 1.25 1.25

!residue 30
assign (resid 30 and name H1 and segid A) (resid 30 and name H22 and segid A) 3.0 0.75 0.75
assign (resid 30 and name H1 and segid A) (resid 30 and name H21 and segid A) 4.0 1.0 1.0
assign (resid 30 and name H1 and segid A) (resid 13 and name H41 and segid A) 3.0 0.75 0.75
assign (resid 30 and name H1 and segid A) (resid 13 and name H42 and segid A) 3.0 0.75 0.75
assign (resid 30 and name H1 and segid A) (resid 30 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 30 and name H1 and segid A) (resid 29 and name H22 and segid A) 5.0 1.25 1.25
assign (resid 30 and name H1 and segid A) (resid 31 and name H5 and segid A) 4.0 1.0 1.0

!residue 34
assign (resid 34 and name H1 and segid A) (resid 34 and name H22 and segid A) 3.0 0.75 0.75
assign (resid 34 and name H1 and segid A) (resid 34 and name H21 and segid A) 3.0 0.75 0.75
assign (resid 34 and name H1 and segid A) (resid 9 and name H41 and segid A) 5.0 1.25 1.25
assign (resid 34 and name H1 and segid A) (resid 9 and name H42 and segid A) 5.0 1.25 1.25
assign (resid 34 and name H1 and segid A) (resid 34 and name H1' and segid A) 5.0 1.25 1.25

!residue 35

!residue 36

!residue 39
assign (resid 39 and name H3 and segid A) (resid 7 and name H2 and segid A) 4.0 1.0 1.0

!residue 41
assign (resid 41 and name H3 and segid A) (resid 42 and name H3 and segid A) 4.0 1.0 1.0
assign (resid 41 and name H3 and segid A) (resid 40 and name H41 and segid A) 5.0 1.25 1.25
assign (resid 41 and name H3 and segid A) (resid 6 and name H21 and segid A) 5.0 1.25 1.25
assign (resid 41 and name H3 and segid A) (resid 6 and name H22 and segid A) 4.0 1.0 1.0
assign (resid 41 and name H3 and segid A) (resid 41 and name H1' and segid A) 4.0 1.0 1.0
assign (resid 41 and name H3 and segid A) (resid 41 and name H2' and segid A) 4.0 1.0 1.0
assign (resid 41 and name H3 and segid A) (resid 41 and name H5 and segid A) 5.0 1.25 1.25
assign (resid 41 and name H3 and segid A) (resid 5 and name H62 and segid A) 4.0 1.0 1.0
assign (resid 41 and name H3 and segid A) (resid 5 and name H61 and segid A) 4.0 1.0 1.0
assign (resid 41 and name H3 and segid A) (resid 5 and name H2 and segid A) 3.0 0.75 0.75
assign (resid 41 and name H3 and segid A) (resid 4 and name H2 and segid A) 5.0 1.25 1.25

!residue 42
assign (resid 42 and name H3 and segid A) (resid 4 and name H62 and segid A) 4.0 1.0 1.0
assign (resid 42 and name H3 and segid A) (resid 4 and name H61 and segid A) 4.0 1.0 1.0
assign (resid 42 and name H3 and segid A) (resid 4 and name H2 and segid A) 3.0 0.75 0.75
assign (resid 42 and name H3 and segid A) (resid 5 and name H2 and segid A) 4.0 1.0 1.0
assign (resid 42 and name H3 and segid A) (resid 5 and name H1' and segid A) 5.0 1.25 1.25
assign (resid 42 and name H3 and segid A) (resid 42 and name H5 and segid A) 4.0 1.0 1.0



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