BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB RNA Chemical Shift Entries

listed by accession number in descending order


Number of entries returned: 319

Query grid description

Retrieve entries as a: Compressed file


Query result listed by accession number in descending order:

Accession number
System name
1H shifts
13C shifts
15N shifts
31P shifts
Protein
DNA
RNA
34428
RNA-binding protein 20/RNA Complex
716
501
123
0
X
 
X
34422
Double-stranded RNA-binding protein Staufen homolog 1/RNA Complex
716
506
80
0
X
 
X
34421
Double-stranded RNA-binding protein Staufen homolog 1/RNA Complex
1205
848
156
0
X
 
X
34324
RNA duplex containing pseudouridine residue
155
83
0
16
 
 
X
34323
RNA duplex containing pseudouridine residue
155
90
0
16
 
 
X
34321
RNA (31-MER)
242
207
77
11
 
 
X
34312
RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3')
194
147
0
0
 
 
X
34311
RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3')
173
147
0
0
 
 
X
34276
Tc-DNA/RNA duplex
228
121
0
0
 
X
X
34265
RNA (5'-R(*UP*GP*GP*UP*GP*GP*U)-3')
67
44
0
7
 
 
X
34259
RNA-binding protein FUS/RNA Complex
803
479
120
0
X
 
X
34258
RNA-binding protein FUS/RNA Complex
285
155
47
0
X
 
X
34199
RNA (27-MER)
203
0
0
0
 
 
X
34171
RNA (5'-R(P*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3')
166
147
0
0
 
 
X
34100
RNA (19-MER)
150
67
4
0
 
 
X
34080
hnRNP A1 RRM2 in complex with 5'-UCAGUU-3' RNA
560
293
92
0
X
 
X
34079
Heterogeneous nuclear ribonucleoprotein A1/RNA Complex
551
293
93
0
X
 
X
34057
CUGBP Elav-like family member 2/RNA Complex
673
335
114
0
X
 
X
34038
RNA (29-MER)
93
63
18
0
 
 
X
30548
RNA (5'-R(*CP*GP*CP*AP*UP*UP*CP*GP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*UP*UP*CP*GP*UP*GP*CP*G)-3')
168
0
0
0
 
 
X
30547
RNA (5'-R(*CP*GP*GP*GP*CP*AP*UP*CP*CP*G)-3')
88
18
0
5
 
 
X
30546
RNA (5'-R(*CP*GP*CP*AP*GP*CP*UP*UP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*GP*CP*UP*UP*UP*GP*CP*G)-3')
148
24
0
7
 
 
X
30512
7SK RNA
207
49
27
0
 
 
X
30511
Protein Tat/RNA Complex
328
134
47
0
X
 
X
30510
Protein Tat/RNA Complex
303
120
20
0
X
 
X
30452
DAB-VAL-ARG-THR-ARG-LYS-GLY-ARG-ARG-ILE-NOR-ILE-DPR-PRO/RNA Complex
324
171
11
0
X
 
X
30386
RNA (5'-R(P*GP*GP*CP*AP*CP*UP*UP*CP*GP*GP*UP*GP*CP*C)-3')
104
0
0
0
 
 
X
30283
RNA (5'-R(*GP*AP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*C)-3')
53
0
0
0
 
 
X
30282
RNA (5'-R(*GP*AP*CP*CP*AP*GP*CP*AP*G)-3')
69
0
0
0
 
 
X
30268
RNA (5'-R(*CP*CP*AP*GP*AP*AP*AP*CP*GP*GP*AP*UP*GP*GP*A)-3')
88
0
0
13
 
 
X
30262
RNA (41-MER)
110
0
0
0
 
 
X
30261
RNA (41-MER)
131
0
0
0
 
 
X
30258
14-mer Peptide/RNA Complex
234
0
13
0
X
 
X
30257
pre-miR-21
180
129
0
0
 
 
X
30224
phage GA operator RNA hairpin
196
158
49
21
 
 
X
30132
Telomerase RNA P2ab
272
206
37
0
 
 
X
30108
riboswitch (47-MER)
290
240
19
0
 
 
X
30051
Cyclic peptide mimetic of HIV-1 Tat/RNA Complex
375
162
0
0
X
 
X
30049
Cyclic peptide mimetic of Tat/RNA Complex
375
162
0
0
X
 
X
30046
Cyclic peptide mimetic of HIV-1 Tat/RNA Complex
375
162
0
0
X
 
X
30026
5'-terminal hairpin of the 7SK snRNA
256
68
23
0
 
 
X
27794
RNA-ligand complex
351
324
146
0
 
 
X
27770
Branchpoint duplex with U2 snRNA site
153
35
0
19
 
 
X
27769
Branchpoint duplex with pseudoU U2 snRNA site
150
36
0
19
 
 
X
27552
m62A-h45
109
2
0
0
 
 
X
27452
env9b_SAH
318
313
126
0
 
 
X
27289
DIS
214
0
0
0
 
 
X
26939
ASH1-mRNA
16
0
0
0
 
 
X
26938
ASH1-mRNA
10
0
0
0
 
 
X
26934
first stem-loop of DsrA RNA
203
140
27
0
 
 
X
26842
TMR-3_48nt-5-TAMRA
415
382
157
3
 
 
X
26568
The structure of the SOLE element of oskar mRNA
251
213
38
30
 
 
X
26033
r(CGG) motif
42
0
0
0
 
 
X
26032
r(CGG) motif
38
0
0
0
 
 
X
26024
RNA (28-MER)
184
78
11
0
 
 
X
26000
delta-J-delta-K domain of EMCV IRES
274
0
0
0
 
 
X
25999
St domain of EMCV IRES
188
164
0
0
 
 
X
25998
K domain of EMCV IRES
176
167
0
0
 
 
X
25997
J domain of EMCV IRES
154
143
0
0
 
 
X
25996
J-K region of EMCV IRES
90
0
0
0
 
 
X
25867
PKI domain of the honeybee dicistrovirus, Israeli acute paralysis virus (IAPV) IRES
29
0
29
0
 
 
X
25831
complex of microRNA 20b pre-element with Rbfox RRM
746
566
115
0
X
 
X
25826
microRNA 20b pre-element
175
153
0
0
 
 
X
25811
core of the U4/U6 di-snRNA
30
5
25
0
 
 
X
25800
Plasmodium falciparum SR1-RRM1 in complex with ACAUCA RNA
374
398
84
0
X
 
X
25785
CssA5 (middle region) of CssA thermometer
204
32
18
0
 
 
X
25784
CssA Thermometer from Neisseria meningitidis
287
31
26
0
 
 
X
25781
CssA3 (top stem) of CssA thermometer
231
67
14
0
 
 
X
25780
CssA4 (bottom stem) of CssA thermometer
215
76
17
0
 
 
X
25777
Tetrahymena telomerase RNA pseudoknot
184
80
0
0
 
 
X
25671
HIV ISS element
172
0
0
0
 
 
X
25669
self complementary Xylonucleic Acid duplex
74
72
0
7
 
 
X
25661
rna-ligand complex
307
265
117
7
 
 
X
25655
II-III-VI three-way junction from the VS ribozyme in complex with MAGNESIUM
511
394
51
0
 
 
X
25654
II-III-VI three-way junction from the VS ribozyme
511
394
51
0
 
 
X
25652
PTBRRM1-SL23H complex
869
535
119
0
X
 
X
25604
double base-pair inversion mutant of murine tumour necrosis factor alpha CDE-23 RNA
180
151
0
22
 
 
X
25603
murine tumour necrosis factor alpha CDE RNA
185
148
33
21
 
 
X
25571
HIV-1 Core Packaging Signal
695
0
0
0
 
 
X
25534
26mer Box C/D RNA (5'-R(P*CP*UP*GP*AP*GP*CP*UP*CP*GP*AP*AP*AP*GP*AP*GP*CP*AP*AP*UP*GP*AP*UP*G)-3')
0
173
49
9
 
 
X
25526
RNA 27-MER, RIBOSTAMYCIN
205
180
27
8
 
 
X
25469
hnRNP C RRM in complex with 5'-UUUUC-3' RNA
651
428
117
0
X
 
X
25436
hnRNP C RRM in complex with the 5'-AUUUUUC-3' RNA
664
464
117
0
X
 
X
25416
RNA (39-MER), 3' splice site in influenza A: 39-nt hairpin
166
0
0
0
 
 
X
25415
3' splice site influenza A: 19-nt duplex
140
0
0
14
 
 
X
25414
3' splice site influenza A: 11-nt hairpin
97
0
0
10
 
 
X
25291
RNA duplex
77
48
0
8
 
 
X
25220
RNA duplex
83
28
0
9
 
 
X
25188
YTH Domain of YT521-B in complex with N6-Methyladenosine containing RNA
966
683
155
0
X
 
X
25164
three-way junction from the VS ribozyme
368
286
39
0
 
 
X
25163
three-way junction from the VS ribozyme
368
286
39
0
 
 
X
25106
CAG RNA
33
0
0
0
 
 
X
25101
tRNApro:MLV Nucleocapsid Protein (1:1) Complex
222
33
0
0
X
 
X
25100
pf tRNApro:MLV-Nucleocapsid (1:2) Complex
219
33
0
0
X
 
X
25052
Nucleocapsid protein p10 and RNA (68-MER)
238
0
0
0
X
 
X
25049
RNA (68-MER)
185
148
27
0
 
 
X
25043
Most two C-terminal RNA Recognition Motif Domain of hnRNP L bound to two equivalents ACACA RNA
1276
700
223
0
X
 
X
25042
Second RNA Recognition Motif Domain of hnRNP L bound to ACACAC RNA
738
419
134
0
X
 
X
25041
First RNA Recognition Motif Domain of hnRNP L bound to CACACA RNA
613
363
102
0
X
 
X
19887
Oligonucleotide Model of the MiR-21 Pre-Element
100
0
0
0
 
 
X
19873
D-arm of tRNA(Met)
110
94
0
0
 
 
X
19776
CPEB4RRM12 in complex with RNA
955
521
177
0
X
 
X
19726
GLD-1 KH-QUA2 bound to 5'-CUACUCAUAU-3'
856
386
144
0
X
 
X
19698
preQ1 Class II riboswitch from Streptococcus pneumoniae
345
245
20
0
 
 
X
19692
Divalent Cations at the Active Site of the Neurospora VS Ribozyme
232
173
91
0
 
 
X
19662
I-V kissing-loop interaction of the Neurospora VS ribozyme
231
186
67
0
 
 
X
19634
CR4/5 domain of medaka telomerase RNA
463
335
65
0
 
 
X
19549
RsmZ(36-44)/RsmE(dimer) 2:1 complex
437
274
70
0
X
 
X
19548
RsmZ(SL4)/RsmE(dimer) 2:1 complex
543
355
81
0
X
 
X
19547
RsmZ(SL3)/RsmE(dimer) 2:1 complex
533
346
76
0
X
 
X
19546
RsmZ(SL2)/RsmE(dimer) 2:1 complex
528
346
78
0
X
 
X
19545
cGCUUAg RNA Pentaloop from Bovine Enterovirus Vir404/03
190
132
17
0
 
 
X
19544
RsmZ(SL1)/RsmE(dimer) 2:1 complex
552
360
78
0
X
 
X
19382
hnRNP G RRM in complex with the RNA 5'-AUCAAA-3'
604
293
97
0
X
 
X
19290
NMR structure of human TDP-43 tandem RRMs in complex with UG-rich RNA
1155
864
182
11
X
 
X
19260
RNA_(48-MER)
339
247
32
0
 
 
X
19248
SRSF1 RRM2 in complex with the RNA 5'-UGAAGGAC-3'
558
271
89
0
X
 
X
19081
P4_CPEB3
179
0
0
0
 
 
X
19040
2'-5' AG1 lariat forming ribozyme
430
347
12
0
 
 
X
19039
domain 5 from Azotobacter vinelandii Intron 5
222
146
31
0
 
 
X
19024
single G-bulge in a conserved regulatory region of the HEV genome
120
137
0
0
 
 
X
19018
E. coli ribosomela decoding site with apramycin
262
256
101
27
 
 
X
18975
Unmodified Helix 69
160
128
0
0
 
 
X
18974
HELIX_69
155
46
0
0
 
 
X
18950
3',5'-LINKED 2'-O-(2-METHOXYETHYL)-RNA DUPLEX
173
0
0
0
 
 
X
18894
d3'-hairpin including the exon binding site 1 (EBS1) of the group II intron Sc.ai5gamma
223
102
18
0
 
 
X
18893
d3'-hairpin of the group II intron Sc.ai5gamma including EBS1 bound to IBS1
306
78
13
0
 
 
X
18892
helix II template boundary element from Tetrahymena telomerase RNA
184
151
34
0
 
 
X
18891
Tetrahymena telomerase RNA stem IV terminal loop
181
141
19
0
 
 
X
18881
d3'-hairpin from the Sc.ai5gamma group II intron including the EBS1:dIBS1 RNA:DNA hybrid
288
56
41
0
 
X
X
18872
ID3 stem
73
59
0
0
 
 
X
18847
stacked G-quadruplex formed by human TERRA sequence
232
0
0
0
 
 
X
18838
ID3 stem loop of domain 1 in the ai5gamma group II intron
158
132
0
0
 
 
X
18633
small molecule-influenza RNA complex
186
0
0
0
 
 
X
18593
RNA Duplex Containing a 2'-O-Pivaloyloxymethyl Modification
178
0
0
0
 
 
X
18549
Helix-35 Stem-loop from E. coli 23S rRNA
185
181
42
0
 
 
X
18534
Ribonuclease III in complex with RNA (32-MER)
672
487
90
0
X
 
X
18532
RNA Aptamer for B. anthracis Ribosomal Protein S8
220
201
65
0
 
 
X
18515
RNA (37-MER)
277
0
0
0
 
 
X
18503
RNA (49-MER)
338
234
64
0
 
 
X
18336
RNA_(27-MER)
209
69
9
0
 
 
X
18240
Mutant of the sub-genomic promoter from Brome Mosaic Virus
100
0
0
14
 
 
X
18239
RNA (5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*AP*UP*CP*UP*UP*C)-3')
105
0
0
15
 
 
X
18079
UNAC Tetraloops
90
0
0
0
 
 
X
18036
UNAC Tetraloops
89
0
0
0
 
 
X
18035
UNAC Tetraloops
88
0
0
0
 
 
X
18034
UNAC Tetraloops
89
0
0
0
 
 
X
17972
U2/U6snRNA
130
80
0
0
 
 
X
17961
U2U6111
45
0
29
0
 
 
X
17941
IV-B_RNA
243
179
47
2
 
 
X
17921
GAAA tetraloop monomer
32
0
22
0
 
 
X
17901
Spliceosome
36
17
12
0
 
 
X
17883
Lin28-ZnF domains bound to AGGAGAU of pre-let-7 miRNA
418
191
64
0
X
 
X
17877
RNA (32-MER)
232
0
0
0
 
 
X
17861
RNA (37-MER)
277
0
0
0
 
 
X
17860
RNA (37-MER)
282
0
0
0
 
 
X
17707
SRSF2_RRM/RNA complex
583
268
97
0
X
 
X
17706
SRSF2
594
246
100
0
X
 
X
17682
RNA (31-MER)
157
39
8
0
 
 
X
17671
RNA (27-MER)
184
141
16
0
 
 
X
17601
MLV readthrough pseudoknot
182
92
0
0
 
 
X
17573
Anticodon Stem-loop (coi6y)
75
38
0
0
 
 
X
17572
i6A37 tyrASL
143
101
24
0
 
 
X
17568
TASL3 (monomer)
94
82
0
0
 
 
X
17567
TASL2 (monomer)
101
77
0
0
 
 
X
17566
TASL1
71
62
0
0
 
 
X
17565
Unmodified Glycyl-tRNA(UCC) anticodon stem-loop
101
82
0
0
 
 
X
17564
Glycyl-tRNA(UCC)1B anticodon stem-loop
107
87
0
0
 
 
X
17563
glycyl-tRNA anticodon stem-loops
108
90
0
0
 
 
X
17560
FZL4 (monomer)
57
56
0
0
 
 
X
17559
FZL2 (monomer)
59
59
0
0
 
 
X
17535
DNA/RNA hybrid
130
36
0
16
 
X
X
17520
Unmodified ASL_Tyr
136
116
41
16
 
 
X
17517
Anticodon Stem-loop of Bacillus subtilis tRNATYR
80
35
0
16
 
 
X
17504
RNA Duplex-Quadruplex Junction Complex with FMRP RGG peptide
410
0
0
0
X
 
X
17449
tRNALys3UUU
131
0
0
0
 
 
X
17436
45-MER
363
76
0
0
 
 
X
17408
HIV TAR RNA
177
0
0
0
 
 
X
17406
5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3'
156
24
8
20
 
 
X
17401
5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3'
48
0
0
0
 
 
X
17326
RP1
60
54
0
0
 
 
X
17316
T box riboswitch Specifier domain and GA motif
408
347
18
0
 
 
X
17309
coronavirus stem-loop 2
123
35
0
4
 
 
X
17292
26-MER
232
173
91
0
 
 
X
17188
35-MER
309
235
61
0
 
 
X
17106
36-MER, 7-DEAZA-7-AMINOMETHYL-GUANINE
319
229
67
0
 
 
X
17088
P6.1 hairpin
138
91
16
0
 
 
X
17083
65-MER
208
0
0
0
 
 
X
17078
tRNALeu monomer
32
0
32
0
 
 
X
16980
5'-R(*CP*UP*AP*GP*UP*UP*AP*GP*CP*UP*AP*AP*CP*UP*AP*G)-3'
77
0
0
0
 
 
X
16953
5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'
81
19
0
8
 
 
X
16952
5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'
95
29
5
10
 
 
X
16951
5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'
107
50
0
10
 
 
X
16950
5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'
85
29
4
10
 
 
X
16941
47-MER
257
0
0
0
X
 
X
16920
Tra2beta1 RRM in complex with AAGAAC RNA
569
280
92
0
X
 
X
16877
PROTEIN/RNA Complex
316
0
0
0
X
 
X
16852
siRNA construct
231
0
0
0
 
 
X
16714
AUCG tetraloop hairpin
104
104
30
13
 
 
X
16655
5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*CP*AP*UP*AP*CP*CP*CP*CP*GP*A)-3'
126
0
0
0
 
 
X
16654
5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*(N)P*AP*UP*AP*CP*CP*CP*CP*GP*A)-3'
130
0
0
0
 
 
X
16609
rna-ligand complex
205
180
27
9
 
 
X
16604
rna-ligand complex
198
174
26
0
 
 
X
16479
G-riboswitch terminator hairpin
119
90
0
0
 
 
X
16431
TAR-2Lig
236
172
57
0
X
 
X
16230
U6 snRNP (small fragment)
544
367
91
0
X
 
X
16194
hnRNP F/AGGGAU G-tract RNA complex
598
283
114
0
X
 
X
16193
hnRNP F/AGGGAU G-tract RNA complex
586
357
97
0
X
 
X
16192
hnRNP F/AGGGAU G-tract RNA complex
593
258
102
0
X
 
X
15915
5'-R(*GP*CP*GP*GP*UP*GP*UP*AP*AP*AP*AP*G)-3'
126
0
0
0
 
 
X
15869
single polyribonucleotide
272
270
47
29
 
 
X
15859
29-MER
183
58
11
0
 
 
X
15858
29-MER
117
36
0
0
 
 
X
15857
29-MER
306
77
13
0
 
 
X
15856
29-MER
221
77
10
0
 
 
X
15786
edhbv
180
100
32
0
 
 
X
15781
5'-R(*GP*UP*CP*GP*UP*GP*CP*UP*G)-3'
148
110
0
15
 
 
X
15780
5'-R(*GP*UP*CP*GP*AP*GP*CP*UP*G)-3'
72
52
0
7
 
 
X
15745
HBV stem-loop alpha;
195
145
50
0
 
 
X
15697
IRES domain IIId
179
0
0
0
 
 
X
15656
Duck HBV apical loop
139
135
38
0
 
 
X
15572
RNA DUPLEX CONTAINING SINGLE ADENOSINE BULGE
87
57
0
10
 
 
X
15571
RNA DUPLEX
182
124
0
17
 
 
X
15538
RNA apatamer
256
193
31
0
 
 
X
15417
34mer_RNA
249
137
11
0
 
 
X
15362
(M6A37)-ASL Val3
120
0
0
0
 
 
X
15342
(cmo5U34)-ASL Val3
124
0
0
0
 
 
X
15331
(cmo5U34 M6A37)-ASL Val3
122
0
0
0
 
 
X
15319
Unmodified ASLval3
117
0
0
0
 
 
X
15257
RsmE dimer with two RNA stem loops
531
340
77
0
X
 
X
15157
Duck HBV epsilon apical tetraloop
21
0
2
0
 
 
X
15113
NC:muPsi complex
551
88
0
0
X
 
X
15081
Human U2 Stem I
124
68
0
0
 
 
X
15080
Yeast U2 stem I
177
133
0
0
 
 
X
11607
Reverse transcriptase recognition site of transcript of a LINE from Denio Renio, LS-1
97
33
0
0
 
 
X
11489
RNA aptamer against prion protein
153
0
0
0
X
 
X
11176
AML22
105
0
0
0
 
 
X
11014
TAR-TAR*GA aptamer kissing complex
235
176
9
0
 
 
X
10018
RNA hairpin of eel LINE
178
0
0
0
 
 
X
10014
helix6 in SRP RNA
64
0
0
0
 
 
X
7405
Human U85 C/D-H/ACA scaRNA
156
117
16
0
 
 
X
7404
Human U64 H/ACA snoRNA
188
127
31
0
 
 
X
7403
telomerase_RNA_CR7
178
191
54
0
 
 
X
7230
5'-R(*GP*GP*CP*UP*AP*AP*GP*AP*C)-3', 5'-R(*GP*UP*CP*GP*AP*AP*GP*CP*C)-3'
102
0
0
0
 
 
X
7098
RNA (35-MER)
181
137
11
0
 
 
X
7090
18 mer hairpin hexaloop
149
90
21
17
 
 
X
6979
5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'/5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(PR5))-3'
168
0
0
18
 
 
X
6956
PROTEIN/RNA Complex
505
352
83
0
X
 
X
6895
PROTEIN/RNA Complex
486
234
84
0
X
 
X
6814
Class I RNA aptamer to GTP
295
0
0
0
 
 
X
6756
D6short
235
143
11
0
 
 
X
6633
HIV-1 frameshift RNA signal
351
273
18
0
 
 
X
6562
D-loop from cloverleaf 1 of bovine enterovirus 1 RNA
155
120
47
16
 
 
X
6543
HIV-1 frameshift inducing RNA
308
91
24
0
 
 
X
6509
ScYLV RNA pseudoknot
263
217
96
28
 
 
X
6485
GluR-B R/G RNA
221
184
0
0
 
 
X
6477
Telomerase RNA P2b-P3 pseudoknot
336
273
73
0
 
 
X
6320
U6 extended ISL
272
189
14
0
 
 
X
6239
VSVI RNA
183
139
1
0
 
 
X
6115
Rhonivirus CRE
268
0
0
0
 
 
X
6094
Psi site of MLV
683
578
35
0
 
 
X
6077
stem-loop RNA
237
89
0
0
 
 
X
6076
stem-loop RNA
261
226
34
0
 
 
X
6062
NRS23
198
153
15
17
 
 
X
6005
TIS11d TZF/ 5'-UUAUUUAUU-3' complex
443
282
70
0
X
 
X
5980
IRES
71
0
0
0
 
 
X
5962
wildtype domain 5 of the ai5gamma group II intron
272
97
41
0
 
 
X
5932
DKC mutant P2b telomerase RNA
136
100
31
0
 
 
X
5919
Loop E of 5S rRNA from spinach chloroplasts
253
110
20
0
 
 
X
5852
A mimic of the VS Ribozyme Hairpin Substrate
212
153
69
0
 
 
X
5834
HIV-1 frameshift inducing stem-loop RNA
155
59
31
0
 
 
X
5781
Propynyl_DNA.RNA_hybrid
175
0
0
0
 
X
X
5777
PODN:RNA
157
0
0
0
 
X
X
5776
sPrODN1:RNA
152
0
0
0
 
X
X
5775
5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3'/5'-D(*CP*CP*UP*CP*CP*UP*U)-3'
147
0
0
0
 
X
X
5773
HIV-1 STEM LOOP SL1 MONOMERIC RNA
272
237
0
0
 
 
X
5705
UUCG tetraloop
140
132
47
14
 
 
X
5703
U6 snRNA intramolecular stem loop
204
66
0
1
 
 
X
5655
U80G U6 ISL RNA
203
138
15
0
 
 
X
5632
telomerase RNA p2b hairpin
262
201
25
0
 
 
X
5614
5'-R(*GP*GP*CP*AP*AP*GP*CP*CP*U)-3'
77
0
0
8
 
 
X
5588
5'-R(*GP*GP*CP*(P5P)P*(P5P)P*GP*CP*CP*U)-3'
80
0
0
8
 
 
X
5587
5'-R(*GP*GP*CP*AP*(P5P)P*GP*CP*CP*U)-3'
77
0
0
8
 
 
X
5586
5'-R(*GP*GP*CP*(P5P)P*AP*GP*CP*CP*U)-3'
77
0
0
8
 
 
X
5553
C4 promoter of influneza A virus
202
29
11
18
 
 
X
5531
5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*(1MG)P*AP*UP*(5MC)P*UP*GP*G)-3'
121
0
0
0
 
 
X
5530
5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*GP*AP*UP*(5MC)P*UP*GP*G)-3'
124
0
0
0
 
 
X
5528
RNA (25-MER):the complementary RNA promoter of influenza a virus
219
0
0
13
 
 
X
5395
Unmodified U2 snRNA - Intron duplex
93
0
0
0
 
 
X
5394
U2 snRNA - Intron duplex
95
0
0
0
 
 
X
5371
U6 RNA
211
41
14
0
 
 
X
5321
helix 6 of signal recognition particle RNA
164
0
0
0
 
 
X
5278
Pea Enation Mosaic Virus P1-P2 frameshifting pseudoknot
173
36
66
0
 
 
X
5259
Anticodon Stem-loop of tRNA(Phe)
114
102
13
14
 
 
X
5256
Anticodon Stem-loop of tRNA(Phe)
126
110
16
17
 
 
X
5193
5'-R(*GP*GP*UP*GP*CP*AP*UP*GP*GP*CP*AP*CP*C)-3'
9
0
0
0
 
 
X
5170
Histone mRNA
139
128
14
0
 
 
X
5046
HCV IRES RNA DOMAIN IIIC
89
0
0
0
 
 
X
5023
5'-R(*GP*GP*UP*GP*CP*UP*UP*AP*GP*CP*AP*CP*C)-3'
10
0
0
0
 
 
X
5007
VS RIBOZYME SUBSTRATE STEM-LOOP
177
107
16
0
 
 
X
4894
MATERNAL EFFECT PROTEIN (STAUFEN)/RNA COMPLEX
681
345
93
4
X
 
X
4867
NUCLEOLIN RBD12/RNA COMPLEX
1144
628
192
0
X
 
X
4816
INFLUENZA A VIRUS PROMOTER RNA
224
39
23
22
 
 
X
4781
SL2 stem loop RNA from HIV-1
436
272
58
0
X
 
X
4780
SL2 stem loop RNA from HIV-1
134
106
0
0
 
 
X
4750
CONSERVED MOTIF IN SRP RNA
214
0
0
0
 
 
X
4745
Bulged RNA
164
0
0
0
 
 
X
4614
5'-r(*GP*CP*AP*GP*GP*CP*GP*UP*GP*C)-3'
54
0
0
0
 
 
X
4547
DNA/RNA
168
0
0
16
 
X
X
4346
L30 MRNA
255
193
24
0
 
 
X
4345
L30-MRNA COMPLEX
861
648
138
0
X
 
X
4253
T2 RNA Pseudoknot
221
162
93
0
 
 
X
4250
3' hairpin of TYMV pseudoknot
149
0
0
0
 
 
X
4247
8mer chimeric hybrid RNA/RNA-DNA duplex with tRNA-DNA junction
145
0
0
0
 
X
X
4226
lead-dependent ribozyme
278
206
92
0
 
 
X
4175
SL3 RNA hairpin
175
0
0
19
 
 
X
4135
RNA duplex including the C-U mismatch
130
0
1
16
 
 
X
4125
RNAse P RNA_1
192
0
0
0
 
 
X
4120
TYMV pseudoknot
339
297
0
0
 
 
X

  Back to the initial grid   Top of this page