BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB RNA Entries

listed by the number of 1H chemical shifts in descending order


Number of entries returned: 331

Query grid description

Retrieve entries as a: Compressed file


Query result listed by the number of 1H chemical shifts in descending order:

Accession number
System name
1H shifts
13C shifts
15N shifts
31P shifts
Protein
DNA
RNA
25043
Most two C-terminal RNA Recognition Motif Domain of hnRNP L bound to two equivalents ACACA RNA
1276
700
223
0
X
 
X
19290
NMR structure of human TDP-43 tandem RRMs in complex with UG-rich RNA
1155
864
182
11
X
 
X
4867
NUCLEOLIN RBD12/RNA COMPLEX
1144
628
192
0
X
 
X
19609
Protein-RNA Ternary Complex
987
575
184
0
X
 
X
25188
YTH Domain of YT521-B in complex with N6-Methyladenosine containing RNA
966
683
155
0
X
 
X
19776
CPEB4RRM12 in complex with RNA
955
521
177
0
X
 
X
25652
PTBRRM1-SL23H complex
869
535
119
0
X
 
X
4345
L30-MRNA COMPLEX
861
648
138
0
X
 
X
19726
GLD-1 KH-QUA2 bound to 5'-CUACUCAUAU-3'
856
386
144
0
X
 
X
25854
Zipcode-binding-protein-1 KH3KH4(DD) domains in complex with the RNA target CACACCC
751
403
0
0
X
 
X
25855
Zipcode-binding-protein-1 KH3(DD)KH4 domains in complex with the RNA target UCGGACU
751
403
0
0
X
 
X
25831
complex of microRNA 20b pre-element with Rbfox RRM
746
566
115
0
X
 
X
17623
Model of human U2AF65 tandem RRM1 and RRM2 domains with eight-site uridine binding
742
375
184
0
X
 
X
17273
human PIWI-like 1 PAZ domain with ssRNA (5'-pUGACA)
738
456
138
0
X
 
X
25042
Second RNA Recognition Motif Domain of hnRNP L bound to ACACAC RNA
738
419
134
0
X
 
X
25571
HIV-1 Core Packaging Signal
695
0
0
0
 
 
X
19778
CPEB1RRM12 in complex with RNA
692
373
194
0
X
 
X
6094
Psi site of MLV
683
578
35
0
 
 
X
4894
MATERNAL EFFECT PROTEIN (STAUFEN)/RNA COMPLEX
681
345
93
4
X
 
X
18534
Ribonuclease III in complex with RNA (32-MER)
672
487
90
0
X
 
X
25436
hnRNP C RRM in complex with the 5'-AUUUUUC-3' RNA
664
464
117
0
X
 
X
11408
CUG-BP- and ETR-3-like factor 1/RNA Complex
653
463
118
0
X
 
X
25469
hnRNP C RRM in complex with 5'-UUUUC-3' RNA
651
428
117
0
X
 
X
25041
First RNA Recognition Motif Domain of hnRNP L bound to CACACA RNA
613
363
102
0
X
 
X
19382
hnRNP G RRM in complex with the RNA 5'-AUCAAA-3'
604
293
97
0
X
 
X
16194
hnRNP F/AGGGAU G-tract RNA complex
598
283
114
0
X
 
X
17706
SRSF2
594
246
100
0
X
 
X
16192
hnRNP F/AGGGAU G-tract RNA complex
593
258
102
0
X
 
X
16193
hnRNP F/AGGGAU G-tract RNA complex
586
357
97
0
X
 
X
17707
SRSF2_RRM/RNA complex
583
268
97
0
X
 
X
17526
NusB/BoxA RNA
572
427
135
0
X
 
X
18846
SUP-12
570
430
99
0
X
 
X
16920
Tra2beta1 RRM in complex with AAGAAC RNA
569
280
92
0
X
 
X
11409
cDNA FLJ40872 fis, clone TUTER2000283, highly similar to Homo sapiens transformer-2-beta (SFRS10) gene
562
409
96
0
X
 
X
34080
hnRNP A1 RRM2 in complex with 5'-UCAGUU-3' RNA
560
293
92
0
X
 
X
19248
SRSF1 RRM2 in complex with the RNA 5'-UGAAGGAC-3'
558
271
89
0
X
 
X
19544
RsmZ(SL1)/RsmE(dimer) 2:1 complex
552
360
78
0
X
 
X
15113
NC:muPsi complex
551
88
0
0
X
 
X
16230
U6 snRNP (small fragment)
544
367
91
0
X
 
X
19548
RsmZ(SL4)/RsmE(dimer) 2:1 complex
543
355
81
0
X
 
X
11541
Protein-RNA Complex
538
317
97
0
X
 
X
19547
RsmZ(SL3)/RsmE(dimer) 2:1 complex
533
346
76
0
X
 
X
15257
RsmE dimer with two RNA stem loops
531
340
77
0
X
 
X
19546
RsmZ(SL2)/RsmE(dimer) 2:1 complex
528
346
78
0
X
 
X
11450
RNA-binding protein Musashi homolog 1
525
386
90
0
X
 
X
7194
TFIIIA zf46 & 5S rRNA complex
525
297
97
0
X
 
X
25655
II-III-VI three-way junction from the VS ribozyme in complex with MAGNESIUM
511
394
51
0
 
 
X
25654
II-III-VI three-way junction from the VS ribozyme
511
394
51
0
 
 
X
6956
PROTEIN/RNA Complex
505
352
83
0
X
 
X
6922
Vts1:RNA dimer
495
399
89
0
X
 
X
6895
PROTEIN/RNA Complex
486
234
84
0
X
 
X
30210
Muscleblind-like protein 1/RNA Complex
472
300
85
0
X
 
X
16425
rna15, hrp1, anchor RNA 3' processing ternary complex
472
280
88
0
X
 
X
19634
CR4/5 domain of medaka telomerase RNA
463
335
65
0
 
 
X
6005
TIS11d TZF/ 5'-UUAUUUAUU-3' complex
443
282
70
0
X
 
X
19549
RsmZ(36-44)/RsmE(dimer) 2:1 complex
437
274
70
0
X
 
X
4781
SL2 stem loop RNA from HIV-1
436
272
58
0
X
 
X
18702
RNA BINDING PROTEIN Solution structure of the third KH domain of KSRP in complex with the G-rich target sequence.
431
235
0
0
X
 
X
19040
2'-5' AG1 lariat forming ribozyme
430
347
12
0
 
 
X
17883
Lin28-ZnF domains bound to AGGAGAU of pre-let-7 miRNA
418
191
64
0
X
 
X
26842
TMR-3_48nt-5-TAMRA
415
382
157
3
 
 
X
15543
rna bound nelfe-rrm
412
224
91
0
X
 
X
17504
RNA Duplex-Quadruplex Junction Complex with FMRP RGG peptide
410
0
0
0
X
 
X
17316
T box riboswitch Specifier domain and GA motif
408
347
18
0
 
 
X
30046
Cyclic peptide mimetic of HIV-1 Tat/RNA Complex
375
162
0
0
X
 
X
30049
Cyclic peptide mimetic of Tat/RNA Complex
375
162
0
0
X
 
X
30051
Cyclic peptide mimetic of HIV-1 Tat/RNA Complex
375
162
0
0
X
 
X
25800
Plasmodium falciparum SR1-RRM1 in complex with ACAUCA RNA
374
398
84
0
X
 
X
25163
three-way junction from the VS ribozyme
368
286
39
0
 
 
X
25164
three-way junction from the VS ribozyme
368
286
39
0
 
 
X
17436
45-MER
363
76
0
0
 
 
X
6633
HIV-1 frameshift RNA signal
351
273
18
0
 
 
X
19698
preQ1 Class II riboswitch from Streptococcus pneumoniae
345
245
20
0
 
 
X
4120
TYMV pseudoknot
339
297
0
0
 
 
X
19260
RNA_(48-MER)
339
247
32
0
 
 
X
18503
RNA (49-MER)
338
234
64
0
 
 
X
6477
Telomerase RNA P2b-P3 pseudoknot
336
273
73
0
 
 
X
17106
36-MER, 7-DEAZA-7-AMINOMETHYL-GUANINE
319
229
67
0
 
 
X
16877
PROTEIN/RNA Complex
316
0
0
0
X
 
X
17188
35-MER
309
235
61
0
 
 
X
6543
HIV-1 frameshift inducing RNA
308
91
24
0
 
 
X
25661
rna-ligand complex
307
265
117
7
 
 
X
15857
29-MER
306
77
13
0
 
 
X
18893
d3'-hairpin of the group II intron Sc.ai5gamma including EBS1 bound to IBS1
306
78
13
0
 
 
X
6814
Class I RNA aptamer to GTP
295
0
0
0
 
 
X
30108
riboswitch (47-MER)
290
240
19
0
 
 
X
18881
d3'-hairpin from the Sc.ai5gamma group II intron including the EBS1:dIBS1 RNA:DNA hybrid
288
56
41
0
 
X
X
25784
CssA Thermometer from Neisseria meningitidis
287
31
26
0
 
 
X
17860
RNA (37-MER)
282
0
0
0
 
 
X
4226
lead-dependent ribozyme
278
206
92
0
 
 
X
17861
RNA (37-MER)
277
0
0
0
 
 
X
18515
RNA (37-MER)
277
0
0
0
 
 
X
26000
delta-J-delta-K domain of EMCV IRES
274
0
0
0
 
 
X
5773
HIV-1 STEM LOOP SL1 MONOMERIC RNA
272
237
0
0
 
 
X
6320
U6 extended ISL
272
189
14
0
 
 
X
5962
wildtype domain 5 of the ai5gamma group II intron
272
97
41
0
 
 
X
30132
Telomerase RNA P2ab
272
206
37
0
 
 
X
15869
single polyribonucleotide
272
270
47
29
 
 
X
6115
Rhonivirus CRE
268
0
0
0
 
 
X
6509
ScYLV RNA pseudoknot
263
217
96
28
 
 
X
5632
telomerase RNA p2b hairpin
262
201
25
0
 
 
X
19018
E. coli ribosomela decoding site with apramycin
262
256
101
27
 
 
X
4028
Sex-lethal protein
261
308
149
0
X
 
X
6076
stem-loop RNA
261
226
34
0
 
 
X
16941
47-MER
257
0
0
0
X
 
X
7314
L11 in complex with rRNA
256
350
136
0
X
 
X
15538
RNA apatamer
256
193
31
0
 
 
X
30026
5'-terminal hairpin of the 7SK snRNA
256
68
23
0
 
 
X
4346
L30 MRNA
255
193
24
0
 
 
X
5919
Loop E of 5S rRNA from spinach chloroplasts
253
110
20
0
 
 
X
26568
The structure of the SOLE element of oskar mRNA
251
213
38
30
 
 
X
15417
34mer_RNA
249
137
11
0
 
 
X
17941
IV-B_RNA
243
179
47
2
 
 
X
6652
GAAA tetraloop/Recptor homodimer
239
88
23
0
 
 
X
25052
Nucleocapsid protein p10 and RNA (68-MER)
238
0
0
0
X
 
X
6077
stem-loop RNA
237
89
0
0
 
 
X
16431
TAR-2Lig
236
172
57
0
X
 
X
6756
D6short
235
143
11
0
 
 
X
11014
TAR-TAR*GA aptamer kissing complex
235
176
9
0
 
 
X
30258
14-mer Peptide/RNA Complex
234
0
13
0
X
 
X
17292
26-MER
232
173
91
0
 
 
X
18847
stacked G-quadruplex formed by human TERRA sequence
232
0
0
0
 
 
X
19692
Divalent Cations at the Active Site of the Neurospora VS Ribozyme
232
173
91
0
 
 
X
17877
RNA (32-MER)
232
0
0
0
 
 
X
19662
I-V kissing-loop interaction of the Neurospora VS ribozyme
231
186
67
0
 
 
X
16852
siRNA construct
231
0
0
0
 
 
X
25781
CssA3 (top stem) of CssA thermometer
231
67
14
0
 
 
X
4816
INFLUENZA A VIRUS PROMOTER RNA
224
39
23
22
 
 
X
18894
d3'-hairpin including the exon binding site 1 (EBS1) of the group II intron Sc.ai5gamma
223
102
18
0
 
 
X
25101
tRNApro:MLV Nucleocapsid Protein (1:1) Complex
222
33
0
0
X
 
X
19039
domain 5 from Azotobacter vinelandii Intron 5
222
146
31
0
 
 
X
4253
T2 RNA Pseudoknot
221
162
93
0
 
 
X
15856
29-MER
221
77
10
0
 
 
X
6485
GluR-B R/G RNA
221
184
0
0
 
 
X
18532
RNA Aptamer for B. anthracis Ribosomal Protein S8
220
201
65
0
 
 
X
25100
pf tRNApro:MLV-Nucleocapsid (1:2) Complex
219
33
0
0
X
 
X
5528
RNA (25-MER):the complementary RNA promoter of influenza a virus
219
0
0
13
 
 
X
25780
CssA4 (bottom stem) of CssA thermometer
215
76
17
0
 
 
X
4750
CONSERVED MOTIF IN SRP RNA
214
0
0
0
 
 
X
5852
A mimic of the VS Ribozyme Hairpin Substrate
212
153
69
0
 
 
X
5371
U6 RNA
211
41
14
0
 
 
X
18336
RNA_(27-MER)
209
69
9
0
 
 
X
17083
65-MER
208
0
0
0
 
 
X
16609
rna-ligand complex
205
180
27
9
 
 
X
25526
RNA 27-MER, RIBOSTAMYCIN
205
180
27
8
 
 
X
5703
U6 snRNA intramolecular stem loop
204
66
0
1
 
 
X
25785
CssA5 (middle region) of CssA thermometer
204
32
18
0
 
 
X
5655
U80G U6 ISL RNA
203
138
15
0
 
 
X
5553
C4 promoter of influneza A virus
202
29
11
18
 
 
X
25060
dCDS1-RNA
199
179
70
0
X
 
X
6062
NRS23
198
153
15
17
 
 
X
16604
rna-ligand complex
198
174
26
0
 
 
X
30224
phage GA operator RNA hairpin
196
158
49
21
 
 
X
15745
HBV stem-loop alpha;
195
145
50
0
 
 
X
4125
RNAse P RNA_1
192
0
0
0
 
 
X
19545
cGCUUAg RNA Pentaloop from Bovine Enterovirus Vir404/03
190
132
17
0
 
 
X
25999
St domain of EMCV IRES
188
164
0
0
 
 
X
7404
Human U64 H/ACA snoRNA
188
127
31
0
 
 
X
18633
small molecule-influenza RNA complex
186
0
0
0
 
 
X
18549
Helix-35 Stem-loop from E. coli 23S rRNA
185
181
42
0
 
 
X
25049
RNA (68-MER)
185
148
27
0
 
 
X
25603
murine tumour necrosis factor alpha CDE RNA
185
148
33
21
 
 
X
17671
RNA (27-MER)
184
141
16
0
 
 
X
26024
RNA (28-MER)
184
78
11
0
 
 
X
18892
helix II template boundary element from Tetrahymena telomerase RNA
184
151
34
0
 
 
X
25777
Tetrahymena telomerase RNA pseudoknot
184
80
0
0
 
 
X
15859
29-MER
183
58
11
0
 
 
X
6239
VSVI RNA
183
139
1
0
 
 
X
15571
RNA DUPLEX
182
124
0
17
 
 
X
17601
MLV readthrough pseudoknot
182
92
0
0
 
 
X
18891
Tetrahymena telomerase RNA stem IV terminal loop
181
141
19
0
 
 
X
7098
RNA (35-MER)
181
137
11
0
 
 
X
30257
pre-miR-21
180
129
0
0
 
 
X
25604
double base-pair inversion mutant of murine tumour necrosis factor alpha CDE-23 RNA
180
151
0
22
 
 
X
15786
edhbv
180
100
32
0
 
 
X
15697
IRES domain IIId
179
0
0
0
 
 
X
19081
P4_CPEB3
179
0
0
0
 
 
X
18593
RNA Duplex Containing a 2'-O-Pivaloyloxymethyl Modification
178
0
0
0
 
 
X
10018
RNA hairpin of eel LINE
178
0
0
0
 
 
X
7403
telomerase_RNA_CR7
178
191
54
0
 
 
X
5007
VS RIBOZYME SUBSTRATE STEM-LOOP
177
107
16
0
 
 
X
17408
HIV TAR RNA
177
0
0
0
 
 
X
15080
Yeast U2 stem I
177
133
0
0
 
 
X
25998
K domain of EMCV IRES
176
167
0
0
 
 
X
25826
microRNA 20b pre-element
175
153
0
0
 
 
X
4175
SL3 RNA hairpin
175
0
0
19
 
 
X
5781
Propynyl_DNA.RNA_hybrid
175
0
0
0
 
X
X
5278
Pea Enation Mosaic Virus P1-P2 frameshifting pseudoknot
173
36
66
0
 
 
X
18950
3',5'-LINKED 2'-O-(2-METHOXYETHYL)-RNA DUPLEX
173
0
0
0
 
 
X
25671
HIV ISS element
172
0
0
0
 
 
X
4547
DNA/RNA
168
0
0
16
 
X
X
6979
5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'/5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(PR5))-3'
168
0
0
18
 
 
X
19996
ROQ-Tnf
166
444
166
0
X
 
X
25416
RNA (39-MER), 3' splice site in influenza A: 39-nt hairpin
166
0
0
0
 
 
X
34171
RNA (5'-R(P*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3')
166
147
0
0
 
 
X
4745
Bulged RNA
164
0
0
0
 
 
X
5321
helix 6 of signal recognition particle RNA
164
0
0
0
 
 
X
18975
Unmodified Helix 69
160
128
0
0
 
 
X
18838
ID3 stem loop of domain 1 in the ai5gamma group II intron
158
132
0
0
 
 
X
5777
PODN:RNA
157
0
0
0
 
X
X
17682
RNA (31-MER)
157
39
8
0
 
 
X
17406
5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3'
156
24
8
20
 
 
X
7405
Human U85 C/D-H/ACA scaRNA
156
117
16
0
 
 
X
5834
HIV-1 frameshift inducing stem-loop RNA
155
59
31
0
 
 
X
6562
D-loop from cloverleaf 1 of bovine enterovirus 1 RNA
155
120
47
16
 
 
X
18974
HELIX_69
155
46
0
0
 
 
X
25997
J domain of EMCV IRES
154
143
0
0
 
 
X
11489
RNA aptamer against prion protein
153
0
0
0
X
 
X
5776
sPrODN1:RNA
152
0
0
0
 
X
X
25072
SXL-UNR-msl2-mRNA
152
130
152
0
X
 
X
4250
3' hairpin of TYMV pseudoknot
149
0
0
0
 
 
X
7090
18 mer hairpin hexaloop
149
90
21
17
 
 
X
15781
5'-R(*GP*UP*CP*GP*UP*GP*CP*UP*G)-3'
148
110
0
15
 
 
X
5775
5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3'/5'-D(*CP*CP*UP*CP*CP*UP*U)-3'
147
0
0
0
 
X
X
26588
ROQ-SELEX consensus hexa-loop RNA
145
0
130
0
X
 
X
4247
8mer chimeric hybrid RNA/RNA-DNA duplex with tRNA-DNA junction
145
0
0
0
 
X
X
26587
ROQ-Ox40hexa-loop RNA
144
296
144
0
X
 
X
17572
i6A37 tyrASL
143
101
24
0
 
 
X
19534
non-coding RNA RsmZ acting as protein sponge: Conformer L of RsmZ(1-72)/RsmE(dimer) 1to3 complex
140
120
20
0
X
 
X
25415
3' splice site influenza A: 19-nt duplex
140
0
0
14
 
 
X
5705
UUCG tetraloop
140
132
47
14
 
 
X
5170
Histone mRNA
139
128
14
0
 
 
X
15656
Duck HBV apical loop
139
135
38
0
 
 
X
17088
P6.1 hairpin
138
91
16
0
 
 
X
5932
DKC mutant P2b telomerase RNA
136
100
31
0
 
 
X
17520
Unmodified ASL_Tyr
136
116
41
16
 
 
X
7315
L11 in complex with rRNA
135
263
135
0
X
 
X
4780
SL2 stem loop RNA from HIV-1
134
106
0
0
 
 
X
30261
RNA (41-MER)
131
0
0
0
 
 
X
17449
tRNALys3UUU
131
0
0
0
 
 
X
16244
U6 snRNP (fragment)
131
0
131
0
X
 
X
4135
RNA duplex including the C-U mismatch
130
0
1
16
 
 
X
17972
U2/U6snRNA
130
80
0
0
 
 
X
16654
5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*(N)P*AP*UP*AP*CP*CP*CP*CP*GP*A)-3'
130
0
0
0
 
 
X
17535
DNA/RNA hybrid
130
36
0
16
 
X
X
7307
L11-RNA complex
127
256
127
0
X
 
X
16655
5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*CP*AP*UP*AP*CP*CP*CP*CP*GP*A)-3'
126
0
0
0
 
 
X
5256
Anticodon Stem-loop of tRNA(Phe)
126
110
16
17
 
 
X
15915
5'-R(*GP*CP*GP*GP*UP*GP*UP*AP*AP*AP*AP*G)-3'
126
0
0
0
 
 
X
5530
5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*GP*AP*UP*(5MC)P*UP*GP*G)-3'
124
0
0
0
 
 
X
15081
Human U2 Stem I
124
68
0
0
 
 
X
15342
(cmo5U34)-ASL Val3
124
0
0
0
 
 
X
17309
coronavirus stem-loop 2
123
35
0
4
 
 
X
15331
(cmo5U34 M6A37)-ASL Val3
122
0
0
0
 
 
X
5531
5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*(1MG)P*AP*UP*(5MC)P*UP*GP*G)-3'
121
0
0
0
 
 
X
15362
(M6A37)-ASL Val3
120
0
0
0
 
 
X
19024
single G-bulge in a conserved regulatory region of the HEV genome
120
137
0
0
 
 
X
16479
G-riboswitch terminator hairpin
119
90
0
0
 
 
X
15858
29-MER
117
36
0
0
 
 
X
15319
Unmodified ASLval3
117
0
0
0
 
 
X
5259
Anticodon Stem-loop of tRNA(Phe)
114
102
13
14
 
 
X
30262
RNA (41-MER)
110
0
0
0
 
 
X
19873
D-arm of tRNA(Met)
110
94
0
0
 
 
X
17563
glycyl-tRNA anticodon stem-loops
108
90
0
0
 
 
X
16951
5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'
107
50
0
10
 
 
X
17564
Glycyl-tRNA(UCC)1B anticodon stem-loop
107
87
0
0
 
 
X
11176
AML22
105
0
0
0
 
 
X
18239
RNA (5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*AP*UP*CP*UP*UP*C)-3')
105
0
0
15
 
 
X
16714
AUCG tetraloop hairpin
104
104
30
13
 
 
X
7230
5'-R(*GP*GP*CP*UP*AP*AP*GP*AP*C)-3', 5'-R(*GP*UP*CP*GP*AP*AP*GP*CP*C)-3'
102
0
0
0
 
 
X
17567
TASL2 (monomer)
101
77
0
0
 
 
X
17565
Unmodified Glycyl-tRNA(UCC) anticodon stem-loop
101
82
0
0
 
 
X
11375
Tia1 protein
100
0
100
0
X
 
X
11406
CUG-BP- and ETR-3-like factor 1
100
0
100
0
X
 
X
19887
Oligonucleotide Model of the MiR-21 Pre-Element
100
0
0
0
 
 
X
18240
Mutant of the sub-genomic promoter from Brome Mosaic Virus
100
0
0
14
 
 
X
11407
CUG-BP- and ETR-3-like factor 1
100
0
100
0
X
 
X
25414
3' splice site influenza A: 11-nt hairpin
97
0
0
10
 
 
X
11607
Reverse transcriptase recognition site of transcript of a LINE from Denio Renio, LS-1
97
33
0
0
 
 
X
11374
Tia1 protein
96
0
96
0
X
 
X
16952
5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'
95
29
5
10
 
 
X
5394
U2 snRNA - Intron duplex
95
0
0
0
 
 
X
17568
TASL3 (monomer)
94
82
0
0
 
 
X
5395
Unmodified U2 snRNA - Intron duplex
93
0
0
0
 
 
X
18079
UNAC Tetraloops
90
0
0
0
 
 
X
25996
J-K region of EMCV IRES
90
0
0
0
 
 
X
18034
UNAC Tetraloops
89
0
0
0
 
 
X
18036
UNAC Tetraloops
89
0
0
0
 
 
X
5046
HCV IRES RNA DOMAIN IIIC
89
0
0
0
 
 
X
15117
NS1A:dsRNA complex
88
235
87
0
X
 
X
18035
UNAC Tetraloops
88
0
0
0
 
 
X
30268
RNA (5'-R(*CP*CP*AP*GP*AP*AP*AP*CP*GP*GP*AP*UP*GP*GP*A)-3')
88
0
0
13
 
 
X
15572
RNA DUPLEX CONTAINING SINGLE ADENOSINE BULGE
87
57
0
10
 
 
X
19686
ASD-1+RNA
87
185
87
0
X
 
X
16950
5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'
85
29
4
10
 
 
X
11410
cDNA FLJ40872 fis, clone TUTER2000283, highly similar to Homo sapiens transformer-2-beta (SFRS10) gene
85
0
85
0
X
 
X
19064
TIAR RRM2
83
246
83
0
X
 
X
25220
RNA duplex
83
28
0
9
 
 
X
11411
cDNA FLJ40872 fis, clone TUTER2000283, highly similar to Homo sapiens transformer-2-beta (SFRS10) gene
82
0
82
0
X
 
X
16953
5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'
81
19
0
8
 
 
X
5588
5'-R(*GP*GP*CP*(P5P)P*(P5P)P*GP*CP*CP*U)-3'
80
0
0
8
 
 
X
17517
Anticodon Stem-loop of Bacillus subtilis tRNATYR
80
35
0
16
 
 
X
11412
cDNA FLJ40872 fis, clone TUTER2000283, highly similar to Homo sapiens transformer-2-beta (SFRS10) gene
78
0
78
0
X
 
X
5586
5'-R(*GP*GP*CP*(P5P)P*AP*GP*CP*CP*U)-3'
77
0
0
8
 
 
X
16980
5'-R(*CP*UP*AP*GP*UP*UP*AP*GP*CP*UP*AP*AP*CP*UP*AP*G)-3'
77
0
0
0
 
 
X
5614
5'-R(*GP*GP*CP*AP*AP*GP*CP*CP*U)-3'
77
0
0
8
 
 
X
5587
5'-R(*GP*GP*CP*AP*(P5P)P*GP*CP*CP*U)-3'
77
0
0
8
 
 
X
25291
RNA duplex
77
48
0
8
 
 
X
17573
Anticodon Stem-loop (coi6y)
75
38
0
0
 
 
X
25669
self complementary Xylonucleic Acid duplex
74
72
0
7
 
 
X
18872
ID3 stem
73
59
0
0
 
 
X
15780
5'-R(*GP*UP*CP*GP*AP*GP*CP*UP*G)-3'
72
52
0
7
 
 
X
5980
IRES
71
0
0
0
 
 
X
17566
TASL1
71
62
0
0
 
 
X
30282
RNA (5'-R(*GP*AP*CP*CP*AP*GP*CP*AP*G)-3')
69
0
0
0
 
 
X
10014
helix6 in SRP RNA
64
0
0
0
 
 
X
25364
SLBP/RNA
62
148
62
0
X
 
X
17326
RP1
60
54
0
0
 
 
X
17559
FZL2 (monomer)
59
59
0
0
 
 
X
17560
FZL4 (monomer)
57
56
0
0
 
 
X
4614
5'-r(*GP*CP*AP*GP*GP*CP*GP*UP*GP*C)-3'
54
0
0
0
 
 
X
30283
RNA (5'-R(*GP*AP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*C)-3')
53
0
0
0
 
 
X
17401
5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3'
48
0
0
0
 
 
X
17961
U2U6111
45
0
29
0
 
 
X
26033
r(CGG) motif
42
0
0
0
 
 
X
26032
r(CGG) motif
38
0
0
0
 
 
X
17901
Spliceosome
36
17
12
0
 
 
X
25106
CAG RNA
33
0
0
0
 
 
X
17921
GAAA tetraloop monomer
32
0
22
0
 
 
X
17078
tRNALeu monomer
32
0
32
0
 
 
X
25811
core of the U4/U6 di-snRNA
30
5
25
0
 
 
X
25867
PKI domain of the honeybee dicistrovirus, Israeli acute paralysis virus (IAPV) IRES
29
0
29
0
 
 
X
15157
Duck HBV epsilon apical tetraloop
21
0
2
0
 
 
X
26939
ASH1-mRNA
16
0
0
0
 
 
X
5023
5'-R(*GP*GP*UP*GP*CP*UP*UP*AP*GP*CP*AP*CP*C)-3'
10
0
0
0
 
 
X
26938
ASH1-mRNA
10
0
0
0
 
 
X
5193
5'-R(*GP*GP*UP*GP*CP*AP*UP*GP*GP*CP*AP*CP*C)-3'
9
0
0
0
 
 
X
25534
26mer Box C/D RNA (5'-R(P*CP*UP*GP*AP*GP*CP*UP*CP*GP*AP*AP*AP*GP*AP*GP*CP*AP*AP*UP*GP*AP*UP*G)-3')
0
173
49
9
 
 
X
19400
The structure of the Box CD enzyme reveals regulation of rRNA methylation
0
0
0
0
X
 
X
6042
30mer stemloop-D of coxsackieviral RNA
0
0
0
0
 
 
X
7308
L11-RNA-thiostrepton complex
0
0
0
0
X
 
X

  Back to the initial grid   Top of this page