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TABLE 1 - COMPUTER PROGRAMS AND MISCELLANEOUS FILES

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NAME
PURPOSE
AUTHOR(S)
REV.  DATE
SUPPORTED

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ALB 
SECONDARY STRUCT. CALC.,PREDICTION 
A.FINKELSTEIN,O.PTITSYN 
10/85
NO
BENDER 
PARAMETERS FOR BENT-WIRE MODELS 
G.WILLIAMS 
 4/82
YES
BLDKIT 
MODEL BUILDER'S KIT 
E.ABOLA 
 2/84
YES
BREAKRING
GENERATE PARAMETERS FROM FIVE-MEMBERED RING
C. MARZEC,L. DAY
1/94
NO
BRUKTP 
MAKE VAX/VMS FILES FROM PDB TAPE 
H.BOSSHARD 
 8/85
NO
CONECT 
GENERATE FULL CONNECTIVITY 
F.BERNSTEIN 
 7/89
YES
CONTCT 
INTERMOLECULAR CONTACTS 
L.ANDREWS 
 5/83
NO
CONTNT 
GENERATE PDB CONTENTS LIST 
H.NICHOLAS JR. 
 4/91
NO
CRYSTAL 
DATA BASE-PROTEIN CRYSTALLIZATION 
G.GILLILAND 
12/84
NO
DGPLOT 
DIAGONAL PLOTS ON PRINTER 
E.SWANSON,F.BERNSTEIN 
 1/83
YES
DIHDRL 
COMPLETE TORSION ANGLES 
E.ABOLA 
 3/80
YES
DRCTRY 
DIRECTORY OF PDB DISTRIBUTION TAPE 
E.ABOLA 
 7/86
YES
DSTNCE 
CALC DISTANCES FROM CONECT RECORDS 
F.BERNSTEIN 
 8/82
YES
FISIPL 
PHI/PSI PLOTS ON PRINTER 
F.BERNSTEIN 
 5/79
YES
LSM 
COLOR-CODED ALPHA-CARBON MODELS 
R.MATELA,R.FLETTERICK 
 3/82
NO
MAKEMOLS*
WRITE BASIC MOLSCRIPT INPUT FILE
L. HOLM
12/94
NO
MAKERING
GENERATE FIVE-MEMBERED RING FROM PARAMETERS
C. MARZEC,L. DAY
1/94
NO
NAMOD 
BALL-AND-STICK MODEL DISPLAY 
Y.BEPPU 
 4/89
NO
NDB 
NUCLEIC ACID DATA BASE + PROGRAMS 
H.BERMAN ET AL. 
 9/89
NO
NEWHEL93
DNA HELIX ANALYSIS 
R.DICKERSON ET AL. 
 2/93
NO
NUPARM 
NUCLEIC ACID PARAMETER DETERMINATN 
M.BANSAL,D.BHATTACHARYYA 
 5/90
NO
PHIPSI 
MAIN-CHAIN TORSION ANGLES 
ANDREWS,WILLIAMS,BERNSTEIN 
 2/79
YES
REFMTE 
REFORMAT DATA FOR SUPERTAB,SUPERB 
L.RELLICK,J.DUANE 
12/83
NO
SEARCHDB
SEQUENCE SEARCH OF PDB ENTRIES 
D.BLOCH 
 6/88
NO
STEREO 
EXTRACT X,Y,Z FROM STEREO DIAGRAMS 
M.ROSSMANN 
 6/79
NO
TABLES 
DISPLAY SPACE-GROUP SYMMETRY IN 3D 
C.ABAD-ZAPATERO,T.O'DONNELL
12/87
NO
TAPDIR 
PRINT DIRECTORY OF TAPE CONTENTS 
H.BERNSTEIN,F.BERNSTEIN 
11/79
YES
THEOD 
MEASURE COORDINATES WITH THEODOLITE 
L.LEBIODA 
 1/82
NO
TORSRU 
COMPLETE TORSION ANGLES 
G.REEKE 
10/79
NO
TOTALS 
VALIDATION OF MASTER RECORD 
L.ANDREWS,F.BERNSTEIN 
 3/82
YES

* New or replacement since January 1996 release	

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