#! /bin/csh

#  Processing script for NMRPipe
#  The script processes data along all dimensions
#  with generic processing parameters
#  For more customized processing scripts use the script
#  generator at http://sbtools.uchc.edu/nmr
#  NOTE: When using the sbtools script generator 
#  copy and paste the contents of the sbtools.input 
#  file directly into the script generator to quickly and accurately
#  fill out the form page with relevant parameters

echo "Converting Bruker data to nmrPipe format"
bruk2pipe -in ./ser -bad 0.0 -noaswap -DMX -decim 16 -dspfvs 12  \
  -xN		2048	  -yN		300  \
  -xT		1024	  -yT		150  \
  -xMODE	DQD	  -yMODE	Complex  \
  -xSW		11160.7143  -ySW	14085.1048  \
  -xOBS		  800.1899  -yOBS	  201.2074  \
  -xCAR		    4.7638  -yCAR	   41.7315  \
  -xLAB		1H  -yLAB		13C  \
  -ndim		2  -aq2D	States  \
  -out hsqcetgpsi.pipe -verb -ov
sleep 2

#! /bin/csh

echo 'Transforming 2-dimensional NMR data!'

nmrPipe -in hsqcetgpsi.pipe -verb  \
| nmrPipe -fn CBF -last 12  \
| nmrPipe -fn GMB -lb -20 -gb 0.2 -size 953 -c 0.5  \
| nmrPipe -fn ZF -size 2048  \
| nmrPipe -fn FT -verb  \
| nmrPipe -fn PS -p0 -144.000 -p1 0 -di  \
| nmrPipe -fn TP  \
| nmrPipe -fn SP -off 0.39 -end 0.95 -pow 2 -size 150 -c 0.5  \
| nmrPipe -fn ZF -size 512  \
| nmrPipe -fn FT -verb  \
| nmrPipe -fn PS -p0 0 -p1 0 -di  \
| nmrPipe -fn TP  \
-out hsqcetgpsi.ft2 -ov