Example) ______________________________________________________________________________ sp|P00173|CYB5_RAT CYTOCHROME B5 >gi|65657|pir||CBRT5 cytochrome b5, microsomal - rat >gi|220730|dbj|BAA02492| (D13205) cytochrome b5 precursor [Rattus rattus] >gi|2257957 (AF007108) cytochrome b5 [Rattus norvegicus] Length = 134 Score = 198 bits (498), Expect = 7e-51 Identities = 94/94 (100%), Positives = 94/94 (100%) Query: 1 DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFED 60 DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFED Sbjct: 6 DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFED 65 Query: 61 VGHSTDARELSKTYIIGELHPDDRSKIAKPSETL 94 VGHSTDARELSKTYIIGELHPDDRSKIAKPSETL Sbjct: 66 VGHSTDARELSKTYIIGELHPDDRSKIAKPSETL 99 _______________________________________________________________________________
Example) _______________________________________________________________________________ real data: sp|P00173| embedded data: gi|65657|, pir||CBRT5, gi|220730|, dbj|BAA02492|, gi|2257957| _______________________________________________________________________________
Example) _______________________________________________________________________________ loop_ _Database_name _Database_accession_code _Database_entry_mol_name _Sequence_query_to_submitted_percentage _Sequence_subject_length _Sequence_identity _Sequence_positive _Sequence_homology_expectation_value SWISS-PROT P00173 "CYTOCHROME B5" 100% 94 100% 100% 7e-51 stop_ _______________________________________________________________________________
a)_Database_name convert: gi and gb ------> GenBank pdb ------> PDB sp ------> SWISS-PROT pir ------> PIR emb ------> EMBL dbj ------> DBJ b)_Database_accession_code gi: gi|accession_code gb: gb|accession_code|locus pdb: pdb|accession_code|chain sp: sp|accession_code|entryname pir: pir||accession_code emb: emb|accession_code|locus dbj: dbj|accession_code|locus or dbj||accession_code c)_Database_entry_mol_name pdb and embeded data: "?" others : first line or string before >gi d)_Sequence_query_to_submitted_percentage (sequence query length / residue count) * 100 e)_Sequence_subject_length length value f)_Sequence_identity identity value g)_Sequence_positive (No positive tag for 'blastn') positive value h)_Sequence_homology_expectation_value Expect value
Example) ----------------------------------------------------------------------------- _Sequence_homology_query_date 2000-03-09 _Sequence_homology_query_revisied_last_date 2000-03-02 -----------------------------------------------------------------------------
Example) ----------------------------------------------------------------------------- loop_ _Database_name _Database_accession_code _Database_entry_mol_name _Database_entry_details PDB 1BFX ? . PDB 1IEU ? . PDB 1IET ? . PDB 1AQA ? . PDB 2AXX ? . PDB 1AW3 ? . PDB 1AXX ? . PDB 1B5A ? . PDB 1B5B ? . PDB 1BLV ? . PDB 1WDB ? . PDB 3B5C ? . PDB 1CYO ? . stop_ _____________________________________________________________________________