Index of /ftp/pub/bmrb/metabolomics/standards_tar

[ICO]NameLast modifiedSizeDescription

[DIR]Parent Directory  -
[   ]jres_tar_01.list20-Sep-2012 10:31 215
[   ]jres_tar_01.tar.gz20-Sep-2012 11:15 268M
[   ]jres_tar_02.list20-Sep-2012 10:38 195
[   ]jres_tar_02.tar.gz20-Sep-2012 11:15 270M
[   ]jres_tar_03.list20-Sep-2012 10:45 243
[   ]jres_tar_03.tar.gz20-Sep-2012 11:15 273M
[   ]jres_tar_04.list20-Sep-2012 10:52 208
[   ]jres_tar_04.tar.gz20-Sep-2012 11:16 273M
[   ]jres_tar_05.list20-Sep-2012 10:58 222
[   ]jres_tar_05.tar.gz20-Sep-2012 11:16 265M
[   ]jres_tar_06.list20-Sep-2012 11:04 211
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[   ]jres_tar_07.list20-Sep-2012 11:09 204
[   ]jres_tar_07.tar.gz20-Sep-2012 11:16 287M
[   ]jres_tar_08.list18-Feb-2013 14:32 244
[   ]jres_tar_08.tar.gz18-Feb-2013 14:32 311M
[   ]supplemental_proton.list10-Oct-2012 10:19 81
[   ]supplemental_proton.tar.gz10-Oct-2012 10:24 12M
[   ]tar_01.list09-Nov-2011 08:47 701
[   ]tar_01.tar.gz09-Nov-2011 08:49 651M
[   ]tar_02.list08-Nov-2011 14:37 611
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[   ]tar_10.list15-Oct-2012 09:52 495
[   ]tar_10.tar.gz15-Oct-2012 09:57 418M
[   ]tar_11.list08-Nov-2011 15:19 594
[   ]tar_11.tar.gz08-Nov-2011 15:19 449M
[   ]tar_12.list10-Aug-2010 09:22 557
[   ]tar_12.tar.gz10-Aug-2010 09:22 390M
[   ]tar_13.list19-Mar-2010 10:24 107
[   ]tar_13.tar.gz19-Mar-2010 10:24 286M
[   ]tar_14.list19-Mar-2010 10:27 144
[   ]tar_14.tar.gz19-Mar-2010 10:28 290M
[   ]tar_15.list19-Mar-2010 10:32 223
[   ]tar_15.tar.gz19-Mar-2010 10:32 576M
[   ]tar_16.list19-Mar-2010 10:44 723
[   ]tar_16.tar.gz19-Mar-2010 10:45 1.5G
[   ]tar_17.list08-Nov-2011 15:26 524
[   ]tar_17.tar.gz08-Nov-2011 15:27 1.4G
[   ]tar_18.list10-Aug-2010 09:28 509
[   ]tar_18.tar.gz10-Aug-2010 09:28 1.1G
[   ]tar_19.list19-Mar-2010 11:37 485
[   ]tar_19.tar.gz19-Mar-2010 11:38 1.1G
[   ]tar_20.list19-Mar-2010 11:54 656
[   ]tar_20.tar.gz19-Mar-2010 11:55 1.6G
[   ]tar_21.list20-Sep-2012 11:32 661
[   ]tar_21.tar.gz20-Sep-2012 11:36 2.1G
[   ]tar_22.list10-Aug-2010 10:13 651
[   ]tar_22.tar.gz10-Aug-2010 10:14 1.6G
[   ]tar_23.list08-Nov-2011 15:39 419
[   ]tar_23.tar.gz08-Nov-2011 15:40 1.5G
[   ]tar_24.list08-Dec-2010 13:16 376
[   ]tar_24.tar.gz08-Dec-2010 13:17 1.5G
[   ]tar_25.list10-Mar-2011 15:42 237
[   ]tar_25.tar.gz10-Mar-2011 15:42 1.0G
[   ]tar_26.list19-Mar-2010 13:44 431
[   ]tar_26.tar.gz19-Mar-2010 13:45 1.4G
[   ]tar_27.list19-Mar-2010 14:05 350
[   ]tar_27.tar.gz19-Mar-2010 14:06 937M
[   ]tar_28.list10-Aug-2010 13:03 182
[   ]tar_28.tar.gz10-Aug-2010 13:07 513M
[   ]tar_29.list10-Mar-2011 15:49 137
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[   ]tar_30.list10-Aug-2010 13:08 119
[   ]tar_30.tar.gz10-Aug-2010 13:36 424M
[   ]tar_31.list10-Aug-2010 13:20 110
[   ]tar_31.tar.gz10-Aug-2010 13:39 367M
[   ]tar_32.list10-Mar-2011 15:53 99
[   ]tar_32.tar.gz10-Mar-2011 15:53 426M
[   ]tar_33.list10-Aug-2010 12:41 157
[   ]tar_33.tar.gz10-Aug-2010 13:41 427M
[   ]tar_34.list19-Mar-2010 15:38 222
[   ]tar_34.tar.gz19-Mar-2010 15:38 507M
[   ]tar_35.list19-Mar-2010 13:55 138
[   ]tar_35.tar.gz19-Mar-2010 13:56 435M
[   ]tar_36.list10-Aug-2010 11:20 492
[   ]tar_36.tar.gz10-Aug-2010 11:31 1.2G
[   ]tar_37.list19-Mar-2010 14:33 304
[   ]tar_37.tar.gz19-Mar-2010 14:34 904M
[   ]tar_38.list10-Aug-2010 09:44 491
[   ]tar_38.tar.gz10-Aug-2010 09:50 836M
[   ]tar_39.list19-Mar-2010 14:51 309
[   ]tar_39.tar.gz19-Mar-2010 14:52 1.0G
[   ]tar_40.list25-Sep-2012 15:04 19
[   ]tar_40.tar25-Sep-2012 15:06 17M
[   ]tar_41.list19-Mar-2010 15:05 348
[   ]tar_41.tar.gz19-Mar-2010 15:06 829M
[   ]tar_42.list15-Nov-2010 15:03 129
[   ]tar_42.tar.gz15-Nov-2010 15:03 474M
[   ]tar_43.list29-Jan-2010 11:25 169
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[   ]tar_44.list29-Jan-2010 11:30 59
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[   ]tar_47.list29-Jan-2010 11:45 219
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[   ]tar_48.list29-Jan-2010 11:47 154
[   ]tar_48.tar.gz29-Jan-2010 11:47 212M
[   ]tar_49.list07-Sep-2010 11:01 174
[   ]tar_49.tar.gz07-Sep-2010 11:02 268M
[   ]tar_50.list07-Sep-2010 11:05 212
[   ]tar_50.tar.gz07-Sep-2010 11:05 293M
[   ]tar_51.list07-Sep-2010 11:08 192
[   ]tar_51.tar.gz07-Sep-2010 11:09 284M
[   ]tar_52.list07-Sep-2010 11:12 195
[   ]tar_52.tar.gz07-Sep-2010 11:12 271M
[   ]tar_53.list16-Aug-2010 14:18 148
[   ]tar_53.tar.gz16-Aug-2010 14:46 179M
[   ]tar_54.list09-Aug-2010 13:41 287
[   ]tar_54.tar.gz09-Aug-2010 13:41 316M
[   ]tar_55.list10-Mar-2011 15:56 259
[   ]tar_55.tar.gz10-Mar-2011 15:56 384M
[   ]tar_56.list07-Sep-2010 11:21 270
[   ]tar_56.tar.gz07-Sep-2010 11:22 394M
[   ]tar_57.list25-May-2012 14:33 81
[   ]tar_57.tar.gz25-May-2012 14:41 117M
[   ]tar_58.list09-Aug-2010 13:56 119
[   ]tar_58.tar.gz09-Aug-2010 13:57 170M
[   ]tar_59.list20-Oct-2010 10:30 97
[   ]tar_59.tar.gz20-Oct-2010 10:35 178M
[   ]tar_60.list18-Oct-2010 15:23 222
[   ]tar_60.tar.gz18-Oct-2010 15:23 320M
[   ]tar_61.list25-Sep-2012 15:46 261
[   ]tar_61.tar.gz25-Sep-2012 15:47 501M
[   ]tar_62.list02-Sep-2010 15:02 188
[   ]tar_62.tar.gz15-Sep-2010 12:42 197M
[   ]tar_63.list10-Mar-2011 16:03 82
[   ]tar_63.tar.gz10-Mar-2011 16:03 179M
[   ]tar_64.list21-Sep-2010 16:09 109
[   ]tar_64.tar.gz21-Sep-2010 16:09 143M
[   ]tar_65.list08-Nov-2011 15:49 57
[   ]tar_65.tar.gz08-Nov-2011 15:49 103M
[   ]tar_67.list28-Oct-2011 11:41 103
[   ]tar_67.tar.gz28-Oct-2011 11:32 133M
[   ]tar_68.list25-Sep-2012 15:51 121
[   ]tar_68.tar.gz25-Sep-2012 15:52 167M
[   ]tar_69.list01-Nov-2011 15:09 202
[   ]tar_69.tar.gz01-Nov-2011 15:09 235M
[   ]tar_70.list25-Sep-2012 15:54 143
[   ]tar_70.tar.gz25-Sep-2012 15:55 182M
[   ]tar_71.list14-Nov-2011 15:32 79
[   ]tar_71.tar.gz14-Nov-2011 15:32 132M
[   ]tar_72.list14-Nov-2011 15:37 146
[   ]tar_72.tar.gz14-Nov-2011 15:37 231M
[   ]tar_73.list16-Nov-2011 14:02 167
[   ]tar_73.tar.gz16-Nov-2011 14:02 232M
[   ]tar_74.list05-Dec-2011 11:41 259
[   ]tar_74.tar.gz05-Dec-2011 11:48 371M
[   ]tar_75.list17-Feb-2012 15:32 145
[   ]tar_75.tar.gz17-Feb-2012 15:32 286M
[   ]tar_76.list25-Sep-2012 16:50 106
[   ]tar_76.tar.gz25-Sep-2012 16:50 193M
[   ]tar_77.list14-Mar-2012 12:09 141
[   ]tar_77.tar.gz14-Mar-2012 12:09 307M
[   ]tar_78.list27-Mar-2012 15:32 172
[   ]tar_78.tar.gz27-Mar-2012 15:32 410M
[   ]tar_79.list12-Apr-2012 14:35 22
[   ]tar_79.tar.gz12-Apr-2012 14:35 597K
[   ]tar_80.list13-Apr-2012 12:41 110
[   ]tar_80.tar.gz13-Apr-2012 12:41 231M
[   ]tar_81.list25-Apr-2012 12:43 178
[   ]tar_81.tar.gz25-Apr-2012 12:43 447M
[   ]tar_82.list01-May-2012 11:08 378
[   ]tar_82.tar.gz01-May-2012 11:08 180M
[   ]tar_83.list17-May-2012 15:13 140
[   ]tar_83.tar.gz17-May-2012 15:13 294M
[   ]tar_84.list07-Jun-2012 14:39 127
[   ]tar_84.tar.gz07-Jun-2012 14:45 289M
[   ]tar_85.list12-Jun-2012 15:00 133
[   ]tar_85.tar.gz12-Jun-2012 15:02 304M
[   ]tar_86.list27-Jul-2012 14:31 164
[   ]tar_86.tar.gz27-Jul-2012 14:31 433M
[   ]tar_87.list02-Aug-2012 13:52 62
[   ]tar_87.tar.gz02-Aug-2012 13:52 120M
[   ]tar_88.list28-Aug-2012 12:33 183
[   ]tar_88.tar.gz28-Aug-2012 12:33 415M
[   ]tar_89.list10-Oct-2012 11:49 178
[   ]tar_89.tar.gz10-Oct-2012 12:20 165M
[   ]tar_90.list10-Oct-2012 12:29 183
[   ]tar_90.tar.gz10-Oct-2012 12:30 372M
[   ]tar_91.list10-Oct-2012 12:25 174
[   ]tar_91.tar.gz10-Oct-2012 12:49 433M
[   ]tar_92.list10-Oct-2012 12:26 149
[   ]tar_92.tar.gz01-Nov-2012 13:09 279M
[   ]tar_93.list10-Oct-2012 12:26 82
[   ]tar_93.tar.gz10-Oct-2012 12:56 114M
[   ]tar_94.list14-Jan-2013 12:46 128
[   ]tar_94.tar.gz14-Jan-2013 12:42 243M
[   ]tar_95.list26-Feb-2013 10:09 127
[   ]tar_95.tar.gz21-Feb-2013 14:39 127M
[   ]tar_96.list26-Feb-2013 14:55 136
[   ]tar_96.tar.gz26-Feb-2013 14:55 290M
[   ]tar_600MHz_01.list10-Oct-2012 13:12 116
[   ]tar_600MHz_01.tar.gz10-Oct-2012 13:30 270M
[   ]tar_600MHz_02.list10-Oct-2012 13:12 131
[   ]tar_600MHz_02.tar.gz10-Oct-2012 13:38 281M
[   ]tar_600MHz_03.list10-Oct-2012 13:13 131
[   ]tar_600MHz_03.tar.gz10-Oct-2012 13:54 239M
[   ]tar_600MHz_04.list10-Oct-2012 13:13 114
[   ]tar_600MHz_04.tar.gz10-Oct-2012 14:44 238M
[   ]tar_600MHz_05.list10-Oct-2012 13:14 135
[   ]tar_600MHz_05.tar.gz10-Oct-2012 14:48 368M

The Metabolomics data that reside at BMRB have been archived in tar files and 
compressed for easier downloads. Due to the large amount of binary data, the 
compression factor is not incredibly large. These are large files.

The data in these files are the same as that contained in the metabolomics/standards 
directory on the BMRB ftp site. The basic directory structure is as follows:


MOLECULE_NAME/
    |
    |
    |____nmr/
    |      |____bmse[num]/ (experimental data)
    |      |         |____1H/          (1H raw data)
    |      |         |____HH_TOCSY/    (HH_TOCSY raw data)
    |      |         |____1H3C/        (13C raw data)
    |      |         |____DEPT_90/     (DEPT_90 raw data)
    |      |         |____DEPT_135/    (DEPT_135 raw data)
    |      |         |____1H_13C_HSQC/ (1H_13C_HSQC raw data)
    |      |         |____index        (text file with experiment conditions)
    |      |         |____bmse[num].str (text file in STAR format with additional
    |      |                         molecular information)
    |      |          
    |      |____bmst[num]/ (theoretical data)
    |      |          |____bmst[num].str
    |      |          |____[name]/
    |      |                |
    |      |                |____[name].mol         
    |      |                |____[name]_opt.pdb     
    |      |                |____[name].go3         
    |      |                |____[name].go3.out     
    |      |                |____[name].go3.shifts  
    |      |
    |      |____bms[etc.]/
    |
    |
    |
    |____lit/
           |____<pubchem_id_1>.sdf
           |____<pubchem_id_1>.png
           |____<pubchem_id_1>.mol
           |____<pubchem_id_2>.sdf
           |____...etc...
           
           

Most of the literature comes from the PubChem Substance list and is named after
the PubChem ID that it came from. For the cases where we could not find all of 
the information we needed in a PubChem file, We obtained it from another source
and named it something else.

Each tar file has a similarly named list that says which molecular data it contains.




HISTORY:

2 May 2006 - Initial collection listed in tar_01.list through tar_10.list
             was posted to the ftp site.
             
18 Oct 2006 - Additional standards, listed in tar_11.list and tar_12.list
             were added
             
7 Jun 2007 - Standards with questionable data and standards with only theoretical
             data were removed from the collection. These were:
              tar_01.list:2_deoxy_D_Ribose
              tar_01.list:3_acetylphenylboronic_acid
              tar_02.list:D_erythrose_4_phosphate
              tar_02.list:D_glucuronolactone
              tar_03.list:D_ribose
              tar_03.list:D_ribose_5_phosphate
              tar_03.list:D_ribulose_1_5_biphosphate
              tar_03.list:D_talose
              tar_04.list:L_erythrose
              tar_05.list:L_threose
              tar_06.list:acetoacetic_Acid
              tar_07.list:dihydroxyacetone_phosphate
              tar_09.list:phenylpyruvic_acid
              tar_09.list:pyruvic_acid
              tar_10.list:xanthurenic_acid