data_5889 ####################### # Entry information # ####################### save_entry_information _Saveframe_category entry_information _Entry_title ; 1H assignments for yeast nucleoporin Nsp1 residues 528-557 ; _BMRB_accession_number 5889 _BMRB_flat_file_name bmr5889.str _Entry_type original _Submission_date 2003-07-30 _Accession_date 2003-07-30 _Entry_origination author _NMR_STAR_version 2.1.1 _Experimental_method NMR _Details . loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Morrison Jonathan . . 2 Yang Ji-Chun . . 3 Stewart Murray . . 4 Neuhaus David . . stop_ loop_ _Saveframe_category_type _Saveframe_category_type_count assigned_chemical_shifts 1 stop_ loop_ _Data_type _Data_type_count "1H chemical shifts" 132 stop_ loop_ _Revision_date _Revision_keyword _Revision_author _Revision_detail 2003-12-19 original author . stop_ _Original_release_date 2003-12-19 save_ ############################# # Citation for this entry # ############################# save_entry_citation _Saveframe_category entry_citation _Citation_full . _Citation_title 'Solution NMR study of the interaction between NTF2 and nucleoporin FxFG repeats' _Citation_status published _Citation_type journal _CAS_abstract_code . _MEDLINE_UI_code . _PubMed_ID 14556747 loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Morrison Jonathan . . 2 Yang Ji-Chun . . 3 Stewart Murray . . 4 Neuhaus David . . stop_ _Journal_abbreviation 'J. Mol. Biol.' _Journal_volume 333 _Journal_issue 3 _Journal_CSD . _Book_chapter_title . _Book_volume . _Book_series . _Book_ISBN . _Conference_state_province . _Conference_abstract_number . _Page_first 587 _Page_last 603 _Year 2003 _Details . save_ ################################## # Molecular system description # ################################## save_system_Nsp1_528-557 _Saveframe_category molecular_system _Mol_system_name 'nucleoporin Nsp1 528-557' _Abbreviation_common 'Nsp1 528-557' _Enzyme_commission_number . loop_ _Mol_system_component_name _Mol_label 'Nsp1 528-557' $Nsp1_528-557 stop_ _System_molecular_weight . _System_physical_state native _System_oligomer_state monomer _System_paramagnetic no _System_thiol_state 'not present' _Database_query_date . _Details . save_ ######################## # Monomeric polymers # ######################## save_Nsp1_528-557 _Saveframe_category monomeric_polymer _Mol_type polymer _Mol_polymer_class protein _Name_common 'nucleoporin Nsp1 528-557' _Abbreviation_common 'Nsp1 528-557' _Molecular_mass . _Mol_thiol_state 'not present' _Details . ############################## # Polymer residue sequence # ############################## _Residue_count 30 _Mol_residue_sequence ; KPAFSFGAKANEKKESDESK SAFSFGSKPT ; loop_ _Residue_seq_code _Residue_label 1 LYS 2 PRO 3 ALA 4 PHE 5 SER 6 PHE 7 GLY 8 ALA 9 LYS 10 ALA 11 ASN 12 GLU 13 LYS 14 LYS 15 GLU 16 SER 17 ASP 18 GLU 19 SER 20 LYS 21 SER 22 ALA 23 PHE 24 SER 25 PHE 26 GLY 27 SER 28 LYS 29 PRO 30 THR stop_ _Sequence_homology_query_date . _Sequence_homology_query_revised_last_date 2014-10-26 loop_ _Database_name _Database_accession_code _Database_entry_mol_name _Sequence_query_to_submitted_percentage _Sequence_subject_length _Sequence_identity _Sequence_positive _Sequence_homology_expectation_value PDB 1O6O "Importin Beta Aa1-442 Bound To Five Fxfg Repeats From Yeast Nsp1p. Second Crystal Form" 100.00 119 100.00 100.00 4.52e-09 stop_ save_ #################### # Natural source # #################### save_natural_source _Saveframe_category natural_source loop_ _Mol_label _Organism_name_common _NCBI_taxonomy_ID _Superkingdom _Kingdom _Genus _Species $Nsp1_528-557 'Baker's yeast' 4932 Eukaryota Fungi Saccharomyces cerevisiae stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Saveframe_category experimental_source loop_ _Mol_label _Production_method _Host_organism_name_common _Genus _Species _Strain _Vector_name $Nsp1_528-557 'chemical synthesis' . . . . . stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Saveframe_category sample _Sample_type solution _Details . loop_ _Mol_label _Concentration_value _Concentration_value_units _Concentration_min_value _Concentration_max_value _Isotopic_labeling $Nsp1_528-557 . mM 1 2 . stop_ save_ ############################ # Computer software used # ############################ save_xwin-nmr _Saveframe_category software _Name xwin-nmr _Version 2.6 loop_ _Task processing stop_ _Details . save_ save_sparky _Saveframe_category software _Name SPARKY _Version 3.91 loop_ _Task 'visualisation during assignment' stop_ _Details . save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_NMR_spectrometer _Saveframe_category NMR_spectrometer _Manufacturer Bruker _Model Avance _Field_strength 800 _Details . save_ ############################# # NMR applied experiments # ############################# save_2D_(1H,_1H)_NOESY_1 _Saveframe_category NMR_applied_experiment _Experiment_name '2D (1H, 1H) NOESY' _Sample_label . save_ save_2D_(1H,_1H)_ROESY_2 _Saveframe_category NMR_applied_experiment _Experiment_name '2D (1H, 1H) ROESY' _Sample_label . save_ save_2D_(1H,_1H)_TOCSY_3 _Saveframe_category NMR_applied_experiment _Experiment_name '2D (1H, 1H) TOCSY' _Sample_label . save_ save_NMR_spec_expt__0_1 _Saveframe_category NMR_applied_experiment _Experiment_name '2D (1H, 1H) NOESY' _BMRB_pulse_sequence_accession_number . _Details . save_ save_NMR_spec_expt__0_2 _Saveframe_category NMR_applied_experiment _Experiment_name '2D (1H, 1H) ROESY' _BMRB_pulse_sequence_accession_number . _Details . save_ save_NMR_spec_expt__0_3 _Saveframe_category NMR_applied_experiment _Experiment_name '2D (1H, 1H) TOCSY' _BMRB_pulse_sequence_accession_number . _Details . save_ ####################### # Sample conditions # ####################### save_Ex-cond_1 _Saveframe_category sample_conditions _Details . loop_ _Variable_type _Variable_value _Variable_value_error _Variable_value_units pH 6.5 0.2 n/a temperature 300 0.5 K stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chemical_shift_reference _Saveframe_category chemical_shift_reference _Details . loop_ _Mol_common_name _Atom_type _Atom_isotope_number _Atom_group _Chem_shift_units _Chem_shift_value _Reference_method _Reference_type _External_reference_sample_geometry _External_reference_location _External_reference_axis _Indirect_shift_ratio DSS H 1 'methyl protons' ppm 0.0 internal direct . . . 1.0 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_shift_set_1 _Saveframe_category assigned_chemical_shifts _Details . loop_ _Sample_label $sample_1 stop_ _Sample_conditions_label $Ex-cond_1 _Chem_shift_reference_set_label $chemical_shift_reference _Mol_system_component_name 'Nsp1 528-557' _Text_data_format . _Text_data . loop_ _Atom_shift_assign_ID _Residue_author_seq_code _Residue_seq_code _Residue_label _Atom_name _Atom_type _Chem_shift_value _Chem_shift_value_error _Chem_shift_ambiguity_code 1 . 2 PRO HA H 4.57 0.02 1 2 . 3 ALA H H 8.52 0.02 1 3 . 3 ALA HA H 4.36 0.02 1 4 . 3 ALA HB H 1.45 0.02 1 5 . 4 PHE H H 8.16 0.02 1 6 . 4 PHE HA H 4.71 0.02 1 7 . 4 PHE HB2 H 3.12 0.02 2 8 . 4 PHE HB3 H 3.17 0.02 2 9 . 4 PHE HD1 H 7.27 0.02 1 10 . 4 PHE HD2 H 7.27 0.02 1 11 . 4 PHE HE1 H 7.38 0.02 1 12 . 4 PHE HE2 H 7.38 0.02 1 13 . 4 PHE HZ H 7.38 0.02 1 14 . 5 SER H H 8.26 0.02 1 15 . 5 SER HA H 4.51 0.02 1 16 . 5 SER HB2 H 3.98 0.02 2 17 . 5 SER HB3 H 3.95 0.02 2 18 . 6 PHE H H 8.30 0.02 1 19 . 6 PHE HA H 4.70 0.02 1 20 . 6 PHE HB2 H 3.31 0.02 2 21 . 6 PHE HB3 H 3.18 0.02 2 22 . 6 PHE HD1 H 7.38 0.02 1 23 . 6 PHE HD2 H 7.38 0.02 1 24 . 6 PHE HE1 H 7.47 0.02 1 25 . 6 PHE HE2 H 7.47 0.02 1 26 . 6 PHE HZ H 7.47 0.02 1 27 . 7 GLY H H 8.42 0.02 1 28 . 7 GLY HA2 H 4.05 0.02 2 29 . 7 GLY HA3 H 3.99 0.02 2 30 . 8 ALA H H 8.17 0.02 1 31 . 8 ALA HA H 4.42 0.02 1 32 . 8 ALA HB H 1.51 0.02 1 33 . 9 LYS H H 8.41 0.02 1 34 . 9 LYS HA H 4.45 0.02 1 35 . 9 LYS HD2 H 1.55 0.02 2 36 . 9 LYS HE2 H 3.13 0.02 2 37 . 10 ALA H H 8.32 0.02 1 38 . 10 ALA HA H 4.37 0.02 1 39 . 10 ALA HB H 1.50 0.02 1 40 . 11 ASN H H 8.42 0.02 1 41 . 11 ASN HA H 4.78 0.02 1 42 . 11 ASN HB2 H 2.96 0.02 2 43 . 11 ASN HB3 H 2.88 0.02 2 44 . 11 ASN HD21 H 7.68 0.02 2 45 . 11 ASN HD22 H 7.00 0.02 2 46 . 12 GLU H H 8.52 0.02 1 47 . 12 GLU HA H 4.41 0.02 1 48 . 12 GLU HB2 H 2.23 0.02 2 49 . 12 GLU HB3 H 2.10 0.02 2 50 . 12 GLU HG2 H 2.46 0.02 2 51 . 12 GLU HG3 H 2.44 0.02 2 52 . 13 LYS H H 8.42 0.02 1 53 . 13 LYS HA H 4.52 0.02 1 54 . 13 LYS HB2 H 1.81 0.02 2 55 . 13 LYS HB3 H 1.89 0.02 2 56 . 13 LYS HD2 H 1.55 0.02 2 57 . 14 LYS H H 8.43 0.02 1 58 . 14 LYS HA H 4.60 0.02 1 59 . 14 LYS HB2 H 1.90 0.02 2 60 . 14 LYS HD2 H 1.51 0.02 2 61 . 14 LYS HD3 H 1.58 0.02 2 62 . 15 GLU H H 8.57 0.02 1 63 . 15 GLU HA H 4.45 0.02 1 64 . 15 GLU HB2 H 2.09 0.02 2 65 . 15 GLU HB3 H 2.20 0.02 2 66 . 15 GLU HG2 H 2.45 0.02 2 67 . 16 SER H H 8.35 0.02 1 68 . 16 SER HA H 4.52 0.02 1 69 . 16 SER HB2 H 3.93 0.02 2 70 . 16 SER HB3 H 3.96 0.02 2 71 . 17 ASP H H 8.50 0.02 1 72 . 17 ASP HA H 4.76 0.02 1 73 . 17 ASP HB2 H 2.88 0.02 2 74 . 17 ASP HB3 H 2.81 0.02 2 75 . 18 GLU H H 8.30 0.02 1 76 . 18 GLU HA H 4.40 0.02 1 77 . 18 GLU HB2 H 2.18 0.02 2 78 . 18 GLU HB3 H 2.08 0.02 2 79 . 18 GLU HG2 H 2.43 0.02 2 80 . 18 GLU HG3 H 2.39 0.02 2 81 . 19 SER H H 8.48 0.02 1 82 . 19 SER HA H 4.47 0.02 1 83 . 19 SER HB2 H 4.04 0.02 2 84 . 20 LYS H H 8.25 0.02 1 85 . 20 LYS HA H 4.47 0.02 1 86 . 20 LYS HB2 H 1.80 0.02 2 87 . 20 LYS HB3 H 1.91 0.02 2 88 . 20 LYS HD2 H 1.54 0.02 2 89 . 20 LYS HD3 H 1.60 0.02 2 90 . 20 LYS HE2 H 3.11 0.02 2 91 . 21 SER H H 8.62 0.02 1 92 . 21 SER HA H 4.52 0.02 1 93 . 21 SER HB2 H 3.85 0.02 2 94 . 22 ALA H H 8.29 0.02 1 95 . 22 ALA HA H 4.37 0.02 1 96 . 22 ALA HB H 1.39 0.02 1 97 . 23 PHE H H 8.13 0.02 1 98 . 23 PHE HA H 4.69 0.02 1 99 . 23 PHE HB2 H 3.20 0.02 2 100 . 23 PHE HB3 H 3.09 0.02 2 101 . 23 PHE HD1 H 7.29 0.02 1 102 . 23 PHE HD2 H 7.29 0.02 1 103 . 23 PHE HE1 H 7.41 0.02 1 104 . 23 PHE HE2 H 7.41 0.02 1 105 . 23 PHE HZ H 7.41 0.02 1 106 . 24 SER H H 8.10 0.02 1 107 . 24 SER HA H 4.51 0.02 1 108 . 24 SER HB2 H 3.87 0.02 2 109 . 25 PHE H H 8.27 0.02 1 110 . 25 PHE HA H 4.71 0.02 1 111 . 25 PHE HB2 H 3.17 0.02 2 112 . 25 PHE HB3 H 3.32 0.02 2 113 . 25 PHE HD1 H 7.38 0.02 1 114 . 25 PHE HD2 H 7.38 0.02 1 115 . 25 PHE HE1 H 7.47 0.02 1 116 . 25 PHE HE2 H 7.47 0.02 1 117 . 25 PHE HZ H 7.47 0.02 1 118 . 26 GLY H H 8.40 0.02 1 119 . 26 GLY HA2 H 4.02 0.02 2 120 . 26 GLY HA3 H 4.10 0.02 2 121 . 27 SER H H 8.19 0.02 1 122 . 28 LYS H H 8.37 0.02 1 123 . 28 LYS HA H 4.41 0.02 1 124 . 28 LYS HB2 H 1.96 0.02 2 125 . 28 LYS HB3 H 1.87 0.02 2 126 . 28 LYS HD2 H 1.58 0.02 2 127 . 28 LYS HE2 H 3.18 0.02 2 128 . 29 PRO HA H 4.59 0.02 1 129 . 30 THR H H 7.89 0.02 1 130 . 30 THR HA H 4.22 0.02 1 131 . 30 THR HB H 4.36 0.02 1 132 . 30 THR HG2 H 1.31 0.02 1 stop_ save_