data_252 ####################### # Entry information # ####################### save_entry_information _Saveframe_category entry_information _Entry_title ; High-Resolution Structure of an HIV Zinc Fingerlike Domain via a New NMR-Based Distance Geometry Approach ; _BMRB_accession_number 252 _BMRB_flat_file_name bmr252.str _Entry_type update _Submission_date 1995-07-31 _Accession_date 1996-04-13 _Entry_origination BMRB _NMR_STAR_version 2.1.1 _Experimental_method NMR _Details . loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Summers Michael F. . 2 South Terri L. . 3 Kim Bo . . 4 Hare Dennis R. . stop_ loop_ _Saveframe_category_type _Saveframe_category_type_count assigned_chemical_shifts 1 stop_ loop_ _Data_type _Data_type_count "1H chemical shifts" 99 stop_ loop_ _Revision_date _Revision_keyword _Revision_author _Revision_detail 2010-06-10 revision BMRB 'Complete natural source information' 1999-06-14 revision BMRB 'Converted to BMRB NMR-STAR V 2.1 format' 1996-04-13 revision BMRB 'Link to the Protein Data Bank added' 1996-03-25 reformat BMRB 'Converted to the BMRB 1996-03-01 STAR flat-file format' 1995-07-31 original BMRB 'Last release in original BMRB flat-file format' stop_ save_ ############################# # Citation for this entry # ############################# save_entry_citation _Saveframe_category entry_citation _Citation_full ; Summers, Michael F., South, Terri L., Kim, Bo, Hare, Dennis R., "High-Resolution Structure of an HIV Zinc Fingerlike Domain via a New NMR-Based Distance Geometry Approach," Biochemistry 29, 329-340 (1990). ; _Citation_title ; High-Resolution Structure of an HIV Zinc Fingerlike Domain via a New NMR-Based Distance Geometry Approach ; _Citation_status published _Citation_type journal _CAS_abstract_code . _MEDLINE_UI_code . _PubMed_ID ? loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Summers Michael F. . 2 South Terri L. . 3 Kim Bo . . 4 Hare Dennis R. . stop_ _Journal_abbreviation Biochemistry _Journal_volume 29 _Journal_issue . _Journal_CSD . _Book_chapter_title . _Book_volume . _Book_series . _Book_ISBN . _Conference_state_province . _Conference_abstract_number . _Page_first 329 _Page_last 340 _Year 1990 _Details . save_ ################################## # Molecular system description # ################################## save_system_p55F1_zinc_fingerlike_domain _Saveframe_category molecular_system _Mol_system_name 'p55F1 zinc fingerlike domain' _Enzyme_commission_number . loop_ _Mol_system_component_name _Mol_label 'p55F1 zinc fingerlike domain' $p55F1_zinc_fingerlike_domain stop_ _System_molecular_weight . _System_oligomer_state ? _System_paramagnetic ? _System_thiol_state . _Database_query_date . _Details . save_ ######################## # Monomeric polymers # ######################## save_p55F1_zinc_fingerlike_domain _Saveframe_category monomeric_polymer _Mol_type polymer _Mol_polymer_class protein _Name_common 'p55F1 zinc fingerlike domain' _Molecular_mass . _Mol_thiol_state . _Details . ############################## # Polymer residue sequence # ############################## _Residue_count 18 _Mol_residue_sequence VKCFNCGKEGHIARNCRA loop_ _Residue_seq_code _Residue_label 1 VAL 2 LYS 3 CYS 4 PHE 5 ASN 6 CYS 7 GLY 8 LYS 9 GLU 10 GLY 11 HIS 12 ILE 13 ALA 14 ARG 15 ASN 16 CYS 17 ARG 18 ALA stop_ _Sequence_homology_query_date . _Sequence_homology_query_revised_last_date 2015-01-29 loop_ _Database_name _Database_accession_code _Database_entry_mol_name _Sequence_query_to_submitted_percentage _Sequence_subject_length _Sequence_identity _Sequence_positive _Sequence_homology_expectation_value BMRB 1640 "nucleic-acid-binding protein" 100.00 18 100.00 100.00 4.37e-03 PDB 1HVN "Zinc-And Sequence-Dependent Binding To Nucleic Acids By The N-Terminal Zinc Finger Domain Of The Hiv-1 Nucleocapsid Protein: Nm" 100.00 18 100.00 100.00 4.37e-03 PDB 1HVO "Zinc-And Sequence-Dependent Binding To Nucleic Acids By The N-Terminal Zinc Finger Domain Of The Hiv-1 Nucleocapsid Protein: Nm" 100.00 18 100.00 100.00 4.37e-03 PDB 2ZNF "High-Resolution Structure Of An Hiv Zinc Fingerlike Domain Via A New Nmr-Based Distance Geometry Approach" 100.00 18 100.00 100.00 4.37e-03 DBJ BAA12988 "Gag [Human immunodeficiency virus 1]" 100.00 512 100.00 100.00 1.00e-04 DBJ BAB85751 "Gag-pol fusion polyprotein [Human immunodeficiency virus 1]" 100.00 1434 100.00 100.00 1.36e-04 DBJ BAB85752 "Gag protein [Human immunodeficiency virus 1]" 100.00 499 100.00 100.00 1.02e-04 DBJ BAB88546 "gag polyprotein [Human immunodeficiency virus 1]" 100.00 500 100.00 100.00 1.04e-04 DBJ BAB88547 "gag polyprotein [Human immunodeficiency virus 1]" 100.00 500 100.00 100.00 1.63e-04 EMBL CAA77482 "p25/p24/p7, partial [Human immunodeficiency virus 1]" 100.00 75 100.00 100.00 2.45e-03 EMBL CAA77483 "p24/p25/p7, partial [Human immunodeficiency virus 1]" 100.00 76 100.00 100.00 2.16e-03 EMBL CAA77487 "p24/p25/p7, partial [Human immunodeficiency virus 1]" 100.00 74 100.00 100.00 2.29e-03 EMBL CAA77488 "p25/p24/p7, partial [Human immunodeficiency virus 1]" 100.00 74 100.00 100.00 2.20e-03 EMBL CAA77490 "p24/p25/p7, partial [Human immunodeficiency virus 1]" 100.00 60 100.00 100.00 2.19e-03 GB AAA45076 "gag protein, partial [Human immunodeficiency virus 1]" 100.00 495 100.00 100.00 1.01e-04 GB AAA45284 "gag protein, partial [Human immunodeficiency virus 1]" 100.00 487 100.00 100.00 9.72e-05 GB AAA45294 "gag protein, partial [Human immunodeficiency virus 1]" 100.00 490 100.00 100.00 1.13e-04 GB AAA76686 "gag [Human immunodeficiency virus 1]" 100.00 500 100.00 100.00 1.51e-04 GB AAA85230 "gag [Human immunodeficiency virus 1]" 100.00 499 100.00 100.00 1.26e-04 PIR FOVWLV "gag polyprotein - human immunodeficiency virus type 1 (isolate LAV-1a)" 100.00 500 100.00 100.00 1.04e-04 SP O93182 "RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: " 100.00 500 100.00 100.00 9.88e-05 SP O93215 "RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: " 100.00 1435 100.00 100.00 1.37e-04 SP P03348 "RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: " 100.00 512 100.00 100.00 1.00e-04 SP P03367 "RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: " 100.00 1447 100.00 100.00 1.37e-04 SP P0C6F2 "RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: " 100.00 1435 100.00 100.00 1.37e-04 stop_ save_ #################### # Natural source # #################### save_natural_source _Saveframe_category natural_source loop_ _Mol_label _Organism_name_common _NCBI_taxonomy_ID _Superkingdom _Kingdom _Genus _Species _Strain _Tissue $p55F1_zinc_fingerlike_domain HIV 12721 Virus . HIV . generic pancreas stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Saveframe_category experimental_source loop_ _Mol_label _Production_method _Host_organism_name_common _Genus _Species _Strain _Vector_name $p55F1_zinc_fingerlike_domain 'not available' . . . . . stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_one _Saveframe_category sample _Sample_type solution _Details . save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_spectrometer_list _Saveframe_category NMR_spectrometer _Manufacturer unknown _Model unknown _Field_strength 0 _Details 'spectrometer information not available' save_ ############################# # NMR applied experiments # ############################# save__1 _Saveframe_category NMR_applied_experiment _Sample_label $sample_one save_ ####################### # Sample conditions # ####################### save_sample_condition_set_one _Saveframe_category sample_conditions _Details . loop_ _Variable_type _Variable_value _Variable_value_error _Variable_value_units pH 7 . na temperature 303 . K stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chem_shift_reference_par_set_one _Saveframe_category chemical_shift_reference _Details . loop_ _Mol_common_name _Atom_type _Atom_isotope_number _Atom_group _Chem_shift_units _Chem_shift_value _Reference_method _Reference_type _External_reference_sample_geometry _External_reference_location _External_reference_axis _Indirect_shift_ratio_citation_label _Correction_value_citation_label H2O/HDO H . . ppm 4.73 . . . . . $entry_citation $entry_citation stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_chemical_shift_assignment_data_set_one _Saveframe_category assigned_chemical_shifts _Details . loop_ _Sample_label $sample_one stop_ _Sample_conditions_label $sample_condition_set_one _Chem_shift_reference_set_label $chem_shift_reference_par_set_one _Mol_system_component_name 'p55F1 zinc fingerlike domain' _Text_data_format . _Text_data . loop_ _Atom_shift_assign_ID _Residue_author_seq_code _Residue_seq_code _Residue_label _Atom_name _Atom_type _Chem_shift_value _Chem_shift_value_error _Chem_shift_ambiguity_code 1 . 1 VAL HA H 3.69 . 1 2 . 1 VAL HB H 2.01 . 1 3 . 1 VAL HG1 H .82 . 2 4 . 1 VAL HG2 H .88 . 2 5 . 2 LYS H H 8.17 . 1 6 . 2 LYS HA H 4.41 . 1 7 . 2 LYS HB2 H 1.5 . 2 8 . 2 LYS HB3 H 1.43 . 2 9 . 2 LYS HG2 H 1.2 . 1 10 . 2 LYS HG3 H 1.2 . 1 11 . 2 LYS HD2 H 1.5 . 1 12 . 2 LYS HD3 H 1.5 . 1 13 . 2 LYS HE2 H 2.51 . 1 14 . 2 LYS HE3 H 2.51 . 1 15 . 3 CYS H H 8.27 . 1 16 . 3 CYS HA H 4.1 . 1 17 . 3 CYS HB2 H 2.79 . 2 18 . 3 CYS HB3 H 1.78 . 2 19 . 4 PHE H H 8.67 . 1 20 . 4 PHE HA H 4.5 . 1 21 . 4 PHE HB2 H 3.15 . 1 22 . 4 PHE HB3 H 3.15 . 1 23 . 5 ASN H H 9.58 . 1 24 . 5 ASN HA H 4.75 . 1 25 . 5 ASN HB2 H 2.68 . 2 26 . 5 ASN HB3 H 3.13 . 2 27 . 5 ASN HD21 H 7.07 . 2 28 . 5 ASN HD22 H 8.21 . 2 29 . 6 CYS H H 8.83 . 1 30 . 6 CYS HA H 4.88 . 1 31 . 6 CYS HB2 H 3.2 . 2 32 . 6 CYS HB3 H 2.53 . 2 33 . 7 GLY H H 7.93 . 1 34 . 7 GLY HA2 H 3.77 . 2 35 . 7 GLY HA3 H 4.09 . 2 36 . 8 LYS H H 8.17 . 1 37 . 8 LYS HA H 4.37 . 1 38 . 8 LYS HB2 H 1.89 . 2 39 . 8 LYS HB3 H 1.8 . 2 40 . 8 LYS HG2 H 1.62 . 2 41 . 8 LYS HG3 H 1.47 . 2 42 . 8 LYS HD2 H 1.76 . 1 43 . 8 LYS HD3 H 1.76 . 1 44 . 8 LYS HE2 H 3.01 . 1 45 . 8 LYS HE3 H 3.01 . 1 46 . 9 GLU H H 8.38 . 1 47 . 9 GLU HA H 4.5 . 1 48 . 9 GLU HB2 H 1.87 . 2 49 . 9 GLU HB3 H 2.04 . 2 50 . 9 GLU HG2 H 2.25 . 2 51 . 9 GLU HG3 H 2.28 . 2 52 . 10 GLY H H 8.43 . 1 53 . 10 GLY HA2 H 4.4 . 2 54 . 10 GLY HA3 H 3.72 . 2 55 . 11 HIS H H 8.3 . 1 56 . 11 HIS HA H 4.74 . 1 57 . 11 HIS HB2 H 3.15 . 1 58 . 11 HIS HB3 H 3.15 . 1 59 . 11 HIS HD2 H 6.87 . 1 60 . 11 HIS HE1 H 7.42 . 1 61 . 12 ILE H H 7.84 . 1 62 . 12 ILE HA H 4.69 . 1 63 . 12 ILE HB H 2.1 . 1 64 . 12 ILE HG12 H 1.21 . 1 65 . 12 ILE HG13 H 1.21 . 1 66 . 12 ILE HG2 H .87 . 1 67 . 12 ILE HD1 H .9 . 1 68 . 13 ALA H H 8.72 . 1 69 . 13 ALA HA H 4.75 . 1 70 . 13 ALA HB H 1.4 . 1 71 . 14 ARG H H 8.22 . 1 72 . 14 ARG HA H 4.12 . 1 73 . 14 ARG HB2 H 1.6 . 2 74 . 14 ARG HB3 H 1.9 . 2 75 . 14 ARG HG2 H 1.6 . 1 76 . 14 ARG HG3 H 1.6 . 1 77 . 14 ARG HD2 H 3.15 . 1 78 . 14 ARG HD3 H 3.15 . 1 79 . 15 ASN H H 8.01 . 1 80 . 15 ASN HA H 5.05 . 1 81 . 15 ASN HB2 H 2.59 . 2 82 . 15 ASN HB3 H 3.11 . 2 83 . 15 ASN HD21 H 7 . 2 84 . 15 ASN HD22 H 7.91 . 2 85 . 16 CYS H H 7.65 . 1 86 . 16 CYS HA H 3.77 . 1 87 . 16 CYS HB2 H 3.33 . 2 88 . 16 CYS HB3 H 3.02 . 2 89 . 17 ARG H H 8.38 . 1 90 . 17 ARG HA H 4.55 . 1 91 . 17 ARG HB2 H 1.56 . 2 92 . 17 ARG HB3 H 1.99 . 2 93 . 17 ARG HG2 H 1.56 . 1 94 . 17 ARG HG3 H 1.56 . 1 95 . 17 ARG HD2 H 3.19 . 1 96 . 17 ARG HD3 H 3.19 . 1 97 . 18 ALA H H 8.39 . 1 98 . 18 ALA HA H 4.07 . 1 99 . 18 ALA HB H 1.32 . 1 stop_ save_