data_2472 ####################### # Entry information # ####################### save_entry_information _Saveframe_category entry_information _Entry_title ; 1H NMR Studies of a Two-Iron: Two-Sulfur Ferredoxin from Halobacterium of the Dead Sea ; _BMRB_accession_number 2472 _BMRB_flat_file_name bmr2472.str _Entry_type update _Submission_date 1995-07-31 _Accession_date 1996-03-25 _Entry_origination BMRB _NMR_STAR_version 2.1.1 _Experimental_method NMR _Details . loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Gochin Miriam . . 2 Degani Hadassa . . stop_ loop_ _Saveframe_category_type _Saveframe_category_type_count assigned_chemical_shifts 1 stop_ loop_ _Data_type _Data_type_count "1H chemical shifts" 1 stop_ loop_ _Revision_date _Revision_keyword _Revision_author _Revision_detail 2010-06-17 revision BMRB 'Complete natural source information' 1999-06-14 revision BMRB 'Converted to BMRB NMR-STAR V 2.1 format' 1996-03-25 reformat BMRB 'Converted to the BMRB 1996-03-01 STAR flat-file format' 1995-07-31 original BMRB 'Last release in original BMRB flat-file format' stop_ save_ ############################# # Citation for this entry # ############################# save_entry_citation _Saveframe_category entry_citation _Citation_full ; Gochin, Miriam, Degani, Hadassa, "1H NMR Studies of a Two-Iron: Two-Sulfur Ferredoxin from Halobacterium of the Dead Sea," J. Inorg. Biochem. 25, 151-161 (1985). ; _Citation_title ; 1H NMR Studies of a Two-Iron: Two-Sulfur Ferredoxin from Halobacterium of the Dead Sea ; _Citation_status published _Citation_type journal _CAS_abstract_code . _MEDLINE_UI_code . _PubMed_ID ? loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Gochin Miriam . . 2 Degani Hadassa . . stop_ _Journal_abbreviation 'J. Inorg. Biochem.' _Journal_volume 25 _Journal_issue . _Journal_CSD . _Book_chapter_title . _Book_volume . _Book_series . _Book_ISBN . _Conference_state_province . _Conference_abstract_number . _Page_first 151 _Page_last 161 _Year 1985 _Details . save_ ################################## # Molecular system description # ################################## save_system_2Fe-2S_ferredoxin _Saveframe_category molecular_system _Mol_system_name '2Fe-2S ferredoxin' _Enzyme_commission_number . loop_ _Mol_system_component_name _Mol_label '2Fe-2S ferredoxin' $2Fe-2S_ferredoxin stop_ _System_molecular_weight . _System_oligomer_state ? _System_paramagnetic ? _System_thiol_state . _Database_query_date . _Details . save_ ######################## # Monomeric polymers # ######################## save_2Fe-2S_ferredoxin _Saveframe_category monomeric_polymer _Mol_type polymer _Mol_polymer_class protein _Name_common '2Fe-2S ferredoxin' _Molecular_mass . _Mol_thiol_state . _Details . ############################## # Polymer residue sequence # ############################## _Residue_count 128 _Mol_residue_sequence ; PTVEYLNYEVVDDNGWDMYD DDVFGEASDMDLDDEDYGSL EVNEGEYILEAAEAQGYDWP FSCRAGACANCAAIVLEGDI DMDMQQILSDEEVEDKNVRL TCIGSPDADEVKIVYNAKHL DYLQNRVI ; loop_ _Residue_seq_code _Residue_label 1 PRO 2 THR 3 VAL 4 GLU 5 TYR 6 LEU 7 ASN 8 TYR 9 GLU 10 VAL 11 VAL 12 ASP 13 ASP 14 ASN 15 GLY 16 TRP 17 ASP 18 MET 19 TYR 20 ASP 21 ASP 22 ASP 23 VAL 24 PHE 25 GLY 26 GLU 27 ALA 28 SER 29 ASP 30 MET 31 ASP 32 LEU 33 ASP 34 ASP 35 GLU 36 ASP 37 TYR 38 GLY 39 SER 40 LEU 41 GLU 42 VAL 43 ASN 44 GLU 45 GLY 46 GLU 47 TYR 48 ILE 49 LEU 50 GLU 51 ALA 52 ALA 53 GLU 54 ALA 55 GLN 56 GLY 57 TYR 58 ASP 59 TRP 60 PRO 61 PHE 62 SER 63 CYS 64 ARG 65 ALA 66 GLY 67 ALA 68 CYS 69 ALA 70 ASN 71 CYS 72 ALA 73 ALA 74 ILE 75 VAL 76 LEU 77 GLU 78 GLY 79 ASP 80 ILE 81 ASP 82 MET 83 ASP 84 MET 85 GLN 86 GLN 87 ILE 88 LEU 89 SER 90 ASP 91 GLU 92 GLU 93 VAL 94 GLU 95 ASP 96 LYS 97 ASN 98 VAL 99 ARG 100 LEU 101 THR 102 CYS 103 ILE 104 GLY 105 SER 106 PRO 107 ASP 108 ALA 109 ASP 110 GLU 111 VAL 112 LYS 113 ILE 114 VAL 115 TYR 116 ASN 117 ALA 118 LYS 119 HIS 120 LEU 121 ASP 122 TYR 123 LEU 124 GLN 125 ASN 126 ARG 127 VAL 128 ILE stop_ _Sequence_homology_query_date . _Sequence_homology_query_revised_last_date 2015-11-25 loop_ _Database_name _Database_accession_code _Database_entry_mol_name _Sequence_query_to_submitted_percentage _Sequence_subject_length _Sequence_identity _Sequence_positive _Sequence_homology_expectation_value PDB 1DOI "2fe-2s Ferredoxin From Haloarcula Marismortui" 100.00 128 100.00 100.00 1.63e-85 DBJ BAA81817 "ferredoxin [Haloarcula japonica]" 100.00 129 98.44 98.44 8.50e-84 GB AAV47329 "ferredoxin [Haloarcula marismortui ATCC 43049]" 100.00 158 100.00 100.00 1.11e-85 GB AEM58530 "ferredoxin [Haloarcula hispanica ATCC 33960]" 92.19 118 97.46 98.31 2.03e-75 GB AHB67254 "ferredoxin [Haloarcula hispanica N601]" 100.00 129 98.44 98.44 8.50e-84 GB AJF25519 "ferredoxin [Haloarcula sp. CBA1115]" 100.00 129 98.44 98.44 8.50e-84 GB EMA14712 "ferredoxin [Haloarcula sinaiiensis ATCC 33800]" 100.00 129 100.00 100.00 1.65e-85 REF WP_004590522 "MULTISPECIES: ferredoxin [Haloarcula]" 100.00 129 98.44 98.44 8.50e-84 REF WP_004959486 "MULTISPECIES: ferredoxin [Haloarcula]" 100.00 129 100.00 100.00 1.65e-85 SP P00217 "RecName: Full=Ferredoxin-1" 100.00 129 100.00 100.00 1.65e-85 stop_ save_ #################### # Natural source # #################### save_natural_source _Saveframe_category natural_source loop_ _Mol_label _Organism_name_common _ICTVdb_decimal_code _NCBI_taxonomy_ID _Superkingdom _Kingdom _Genus _Species _Strain $2Fe-2S_ferredoxin . Archaea 2243 . . Halobacterium sp. 'Dead Sea (HFd)' stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Saveframe_category experimental_source loop_ _Mol_label _Production_method _Host_organism_name_common _Genus _Species _Strain _Vector_name $2Fe-2S_ferredoxin 'not available' . . . . . stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_one _Saveframe_category sample _Sample_type solution _Details . save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_spectrometer_list _Saveframe_category NMR_spectrometer _Manufacturer unknown _Model unknown _Field_strength 0 _Details 'spectrometer information not available' save_ ############################# # NMR applied experiments # ############################# save__1 _Saveframe_category NMR_applied_experiment _Sample_label $sample_one save_ ####################### # Sample conditions # ####################### save_sample_condition_set_one _Saveframe_category sample_conditions _Details . loop_ _Variable_type _Variable_value _Variable_value_error _Variable_value_units pH 6.8 . na temperature 298 . K stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chem_shift_reference_par_set_one _Saveframe_category chemical_shift_reference _Details . loop_ _Mol_common_name _Atom_type _Atom_isotope_number _Atom_group _Chem_shift_units _Chem_shift_value _Reference_method _Reference_type _External_reference_sample_geometry _External_reference_location _External_reference_axis _Indirect_shift_ratio_citation_label _Correction_value_citation_label DSS H . . ppm 0 . . . . . $entry_citation $entry_citation stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_chemical_shift_assignment_data_set_one _Saveframe_category assigned_chemical_shifts _Details . loop_ _Sample_label $sample_one stop_ _Sample_conditions_label $sample_condition_set_one _Chem_shift_reference_set_label $chem_shift_reference_par_set_one _Mol_system_component_name '2Fe-2S ferredoxin' _Text_data_format . _Text_data . loop_ _Atom_shift_assign_ID _Residue_author_seq_code _Residue_seq_code _Residue_label _Atom_name _Atom_type _Chem_shift_value _Chem_shift_value_error _Chem_shift_ambiguity_code 1 . 119 HIS HE1 H 8.09 . 1 stop_ save_