data_27709 ####################### # Entry information # ####################### save_entry_information _Saveframe_category entry_information _Entry_title ; Backbone assignment of mouse MARCH9 transmembrane domains in TDPC:SDS micelles ; _BMRB_accession_number 27709 _BMRB_flat_file_name bmr27709.str _Entry_type original _Submission_date 2018-12-02 _Accession_date 2018-12-02 _Entry_origination author _NMR_STAR_version 2.1.1 _Experimental_method NMR _Details . loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Tan Cyrus . . 2 Byrne Eamon F.X. . 3 Call Melissa J. . 4 Call Matthew E. . stop_ loop_ _Saveframe_category_type _Saveframe_category_type_count assigned_chemical_shifts 1 stop_ loop_ _Data_type _Data_type_count "1H chemical shifts" 63 "13C chemical shifts" 121 "15N chemical shifts" 63 stop_ loop_ _Revision_date _Revision_keyword _Revision_author _Revision_detail 2019-02-18 update BMRB 'update entry citation' 2018-12-12 original author 'original release' stop_ loop_ _Related_BMRB_accession_number _Relationship 27543 'Backbone assignment of mouse MARCH9 transmembrane domains in LMPG micelles' stop_ _Original_release_date 2018-12-03 save_ ############################# # Citation for this entry # ############################# save_citations_1 _Saveframe_category entry_citation _Citation_full . _Citation_title ; A serine in the first transmembrane domain of the human E3 ubiquitin ligase MARCH9 is critical for down-regulation of its protein substrates ; _Citation_status published _Citation_type journal _CAS_abstract_code . _MEDLINE_UI_code . _PubMed_ID 30554144 loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Tan Cyrus . . 2 Byrne Eamon . . 3 Ah-Cann Casey . . 4 Call Melissa . . 5 Call Matthew . . stop_ _Journal_abbreviation 'J. Biol. Chem.' _Journal_name_full 'The Journal of biological chemistry' _Journal_volume 294 _Journal_issue 7 _Journal_ISSN 1083-351X _Journal_CSD . _Book_chapter_title . _Book_volume . _Book_series . _Book_ISBN . _Conference_state_province . _Conference_abstract_number . _Page_first 2470 _Page_last 2485 _Year 2019 _Details . save_ ################################## # Molecular system description # ################################## save_assembly _Saveframe_category molecular_system _Mol_system_name MARCH9-TM _Enzyme_commission_number . loop_ _Mol_system_component_name _Mol_label MARCH9-TM $MARCH9-TM stop_ _System_molecular_weight 7123 _System_physical_state native _System_oligomer_state ? _System_paramagnetic no _System_thiol_state . _Database_query_date . _Details . save_ ######################## # Monomeric polymers # ######################## save_MARCH9-TM _Saveframe_category monomeric_polymer _Mol_type polymer _Mol_polymer_class protein _Name_common MARCH9-TM _Molecular_mass 7123 _Mol_thiol_state 'not present' _Details . ############################## # Polymer residue sequence # ############################## _Residue_count 65 _Mol_residue_sequence ; IEKVQIAAIVLGSLFLVASI SWLIWSSLSPSAKWQRQDLL FQISYGVYGFVDVVSIGLIV HEGSS ; loop_ _Residue_seq_code _Residue_author_seq_code _Residue_label 1 180 ILE 2 181 GLU 3 182 LYS 4 183 VAL 5 184 GLN 6 185 ILE 7 186 ALA 8 187 ALA 9 188 ILE 10 189 VAL 11 190 LEU 12 191 GLY 13 192 SER 14 193 LEU 15 194 PHE 16 195 LEU 17 196 VAL 18 197 ALA 19 198 SER 20 199 ILE 21 200 SER 22 201 TRP 23 202 LEU 24 203 ILE 25 204 TRP 26 205 SER 27 206 SER 28 207 LEU 29 208 SER 30 209 PRO 31 210 SER 32 211 ALA 33 212 LYS 34 213 TRP 35 214 GLN 36 215 ARG 37 216 GLN 38 217 ASP 39 218 LEU 40 219 LEU 41 220 PHE 42 221 GLN 43 222 ILE 44 223 SER 45 224 TYR 46 225 GLY 47 226 VAL 48 227 TYR 49 228 GLY 50 229 PHE 51 230 VAL 52 231 ASP 53 232 VAL 54 233 VAL 55 234 SER 56 235 ILE 57 236 GLY 58 237 LEU 59 238 ILE 60 239 VAL 61 240 HIS 62 241 GLU 63 242 GLY 64 243 SER 65 244 SER stop_ _Sequence_homology_query_date . _Sequence_homology_query_revised_last_date . save_ #################### # Natural source # #################### save_natural_source _Saveframe_category natural_source loop_ _Mol_label _Organism_name_common _NCBI_taxonomy_ID _Superkingdom _Kingdom _Genus _Species _Gene_mnemonic $MARCH9-TM Mouse 10090 Eukaryota Metazoa Mus musculus March9 stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Saveframe_category experimental_source loop_ _Mol_label _Production_method _Host_organism_name_common _Genus _Species _Strain _Vector_name $MARCH9-TM 'recombinant technology' . Escherichia coli . pMM stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Saveframe_category sample _Sample_type micelle _Details '1 mM peptide in 250 mM tetradecylphosphocholine, 50 mM sodium dodecyl sulfate, 20 mM phosphate buffer (pH 6.8) and 5% D2O.' loop_ _Mol_label _Concentration_value _Concentration_value_units _Isotopic_labeling tetradecylphosphocholine 250 mM 'natural abundance' 'sodium dodecyl sulfate' 50 mM 'natural abundance' 'sodium phosphate' 20 mM 'natural abundance' D2O 5 % '[U-99% 2H]' $MARCH9-TM 1 mM '[U-100% 13C; U-100% 15N; U-80% 2H]' stop_ save_ ############################ # Computer software used # ############################ save_TOPSPIN _Saveframe_category software _Name TOPSPIN _Version 3.2 loop_ _Vendor _Address _Electronic_address 'Bruker Biospin' . . stop_ loop_ _Task collection processing stop_ _Details . save_ save_XEASY _Saveframe_category software _Name XEASY _Version . loop_ _Vendor _Address _Electronic_address 'Keller and Wuthrich' . . stop_ loop_ _Task 'chemical shift assignment' 'peak picking' stop_ _Details . save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_spectrometer_1 _Saveframe_category NMR_spectrometer _Manufacturer Bruker _Model Avance _Field_strength 600 _Details . save_ ############################# # NMR applied experiments # ############################# save_2D_1H-15N_HSQC_1 _Saveframe_category NMR_applied_experiment _Experiment_name '2D 1H-15N HSQC' _Sample_label $sample_1 save_ save_3D_HNCACB_2 _Saveframe_category NMR_applied_experiment _Experiment_name '3D HNCACB' _Sample_label $sample_1 save_ save_3D_HN(CO)CA_3 _Saveframe_category NMR_applied_experiment _Experiment_name '3D HN(CO)CA' _Sample_label $sample_1 save_ ####################### # Sample conditions # ####################### save_sample_conditions_1 _Saveframe_category sample_conditions _Details . loop_ _Variable_type _Variable_value _Variable_value_error _Variable_value_units 'ionic strength' 0.02 . M pH 6.8 . pH pressure 1 . atm temperature 313 . K stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chem_shift_reference_1 _Saveframe_category chemical_shift_reference _Details . loop_ _Mol_common_name _Atom_type _Atom_isotope_number _Atom_group _Chem_shift_units _Chem_shift_value _Reference_method _Reference_type _External_reference_sample_geometry _External_reference_location _External_reference_axis _Indirect_shift_ratio DSS C 13 'methyl protons' ppm 0.00 na indirect . . . 0.251449530 DSS H 1 'methyl protons' ppm 0.00 internal direct . . . 1.000000000 DSS N 15 'methyl protons' ppm 0.00 na indirect . . . 0.101329118 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chem_shift_list_1 _Saveframe_category assigned_chemical_shifts _Details . loop_ _Experiment_label '2D 1H-15N HSQC' '3D HNCACB' '3D HN(CO)CA' stop_ loop_ _Sample_label $sample_1 stop_ _Sample_conditions_label $sample_conditions_1 _Chem_shift_reference_set_label $chem_shift_reference_1 _Mol_system_component_name MARCH9-TM _Text_data_format . _Text_data . loop_ _Atom_shift_assign_ID _Residue_author_seq_code _Residue_seq_code _Residue_label _Atom_name _Atom_type _Chem_shift_value _Chem_shift_value_error _Chem_shift_ambiguity_code 1 180 1 ILE CA C 57.002 0.2 1 2 180 1 ILE CB C 35.134 0.2 1 3 181 2 GLU H H 8.456 0.01 1 4 181 2 GLU CA C 51.879 0.2 1 5 181 2 GLU CB C 27.307 0.2 1 6 181 2 GLU N N 124.492 0.1 1 7 182 3 LYS H H 9.106 0.01 1 8 182 3 LYS CA C 57.925 0.2 1 9 182 3 LYS CB C 27.307 0.2 1 10 182 3 LYS N N 123.082 0.1 1 11 183 4 VAL H H 8.853 0.01 1 12 183 4 VAL CA C 62.836 0.2 1 13 183 4 VAL CB C 27.355 0.2 1 14 183 4 VAL N N 117.141 0.1 1 15 184 5 GLN H H 7.063 0.01 1 16 184 5 GLN CA C 56.005 0.2 1 17 184 5 GLN CB C 24.461 0.2 1 18 184 5 GLN N N 118.293 0.1 1 19 185 6 ILE H H 7.869 0.01 1 20 185 6 ILE CA C 62.13 0.2 1 21 185 6 ILE CB C 33.835 0.2 1 22 185 6 ILE N N 118.459 0.1 1 23 186 7 ALA H H 8.254 0.01 1 24 186 7 ALA CA C 52.34 0.2 1 25 186 7 ALA CB C 14.386 0.2 1 26 186 7 ALA N N 120.765 0.1 1 27 187 8 ALA H H 7.949 0.01 1 28 187 8 ALA CA C 52.245 0.2 1 29 187 8 ALA CB C 14.774 0.2 1 30 187 8 ALA N N 118.733 0.1 1 31 188 9 ILE H H 8.016 0.01 1 32 188 9 ILE CA C 62.362 0.2 1 33 188 9 ILE CB C 34.565 0.2 1 34 188 9 ILE N N 117.758 0.1 1 35 189 10 VAL H H 8.592 0.01 1 36 189 10 VAL CA C 64.16 0.2 1 37 189 10 VAL CB C 27.724 0.2 1 38 189 10 VAL N N 122.229 0.1 1 39 190 11 LEU H H 8.497 0.01 1 40 190 11 LEU CA C 55.015 0.2 1 41 190 11 LEU CB C 37.763 0.2 1 42 190 11 LEU N N 118.911 0.1 1 43 191 12 GLY H H 8.724 0.01 1 44 191 12 GLY CA C 44.27 0.2 1 45 191 12 GLY N N 105.739 0.1 1 46 192 13 SER H H 8.233 0.01 1 47 192 13 SER CA C 60.769 0.2 1 48 192 13 SER CB C 59.346 0.2 1 49 192 13 SER N N 118.254 0.1 1 50 193 14 LEU H H 8.121 0.01 1 51 193 14 LEU CA C 54.895 0.2 1 52 193 14 LEU CB C 37.79 0.2 1 53 193 14 LEU N N 122.32 0.1 1 54 194 15 PHE H H 8.371 0.01 1 55 194 15 PHE CA C 57.925 0.2 1 56 194 15 PHE CB C 35.096 0.2 1 57 194 15 PHE N N 118.54 0.1 1 58 195 16 LEU H H 8.398 0.01 1 59 195 16 LEU CA C 55.397 0.2 1 60 195 16 LEU CB C 38.006 0.2 1 61 195 16 LEU N N 122.371 0.1 1 62 196 17 VAL H H 8.479 0.01 1 63 196 17 VAL CA C 63.754 0.2 1 64 196 17 VAL CB C 27.627 0.2 1 65 196 17 VAL N N 118.159 0.1 1 66 197 18 ALA H H 8.812 0.01 1 67 197 18 ALA CA C 52.326 0.2 1 68 197 18 ALA CB C 14.628 0.2 1 69 197 18 ALA N N 124.176 0.1 1 70 198 19 SER H H 8.118 0.01 1 71 198 19 SER CA C 60.268 0.2 1 72 198 19 SER N N 114.416 0.1 1 73 199 20 ILE H H 8.24 0.01 1 74 199 20 ILE CA C 62.035 0.2 1 75 199 20 ILE CB C 34.029 0.2 1 76 199 20 ILE N N 121.908 0.1 1 77 200 21 SER H H 8.24 0.01 1 78 200 21 SER CA C 60.841 0.2 1 79 200 21 SER N N 116.8 0.1 1 80 201 22 TRP H H 8.49 0.01 1 81 201 22 TRP CA C 58.472 0.2 1 82 201 22 TRP CB C 25.493 0.2 1 83 201 22 TRP N N 122.674 0.1 1 84 202 23 LEU H H 8.373 0.01 1 85 202 23 LEU CA C 55.115 0.2 1 86 202 23 LEU CB C 38.217 0.2 1 87 202 23 LEU N N 121.578 0.1 1 88 203 24 ILE H H 8.445 0.01 1 89 203 24 ILE CA C 62.321 0.2 1 90 203 24 ILE CB C 34.138 0.2 1 91 203 24 ILE N N 119.555 0.1 1 92 204 25 TRP H H 8.727 0.01 1 93 204 25 TRP CA C 57.761 0.2 1 94 204 25 TRP CB C 26.169 0.2 1 95 204 25 TRP N N 121.291 0.1 1 96 205 26 SER H H 8.456 0.01 1 97 205 26 SER CA C 57.577 0.2 1 98 205 26 SER CB C 59.99 0.2 1 99 205 26 SER N N 112.086 0.1 1 100 206 27 SER H H 7.581 0.01 1 101 206 27 SER CA C 57.283 0.2 1 102 206 27 SER CB C 60.796 0.2 1 103 206 27 SER N N 116.481 0.1 1 104 207 28 LEU H H 7.483 0.01 1 105 207 28 LEU CA C 51.982 0.2 1 106 207 28 LEU CB C 39.024 0.2 1 107 207 28 LEU N N 120.374 0.1 1 108 208 29 SER H H 7.768 0.01 1 109 208 29 SER CA C 53.396 0.2 1 110 208 29 SER CB C 60.417 0.2 1 111 208 29 SER N N 115.535 0.1 1 112 209 30 PRO CA C 61.081 0.2 1 113 210 31 SER H H 7.929 0.01 1 114 210 31 SER CA C 55.373 0.2 1 115 210 31 SER CB C 60.279 0.2 1 116 210 31 SER N N 113.564 0.1 1 117 211 32 ALA H H 7.754 0.01 1 118 211 32 ALA CA C 49.667 0.2 1 119 211 32 ALA CB C 15.501 0.2 1 120 211 32 ALA N N 125.526 0.1 1 121 212 33 LYS H H 8.063 0.01 1 122 212 33 LYS CA C 53.459 0.2 1 123 212 33 LYS CB C 29.11 0.2 1 124 212 33 LYS N N 119.686 0.1 1 125 213 34 TRP H H 7.854 0.01 1 126 213 34 TRP CA C 53.491 0.2 1 127 213 34 TRP CB C 26.359 0.2 1 128 213 34 TRP N N 120.71 0.1 1 129 214 35 GLN H H 8.469 0.01 1 130 214 35 GLN CA C 52.638 0.2 1 131 214 35 GLN CB C 26.121 0.2 1 132 214 35 GLN N N 120.91 0.1 1 133 215 36 ARG H H 8.367 0.01 1 134 215 36 ARG CA C 54.44 0.2 1 135 215 36 ARG CB C 25.979 0.2 1 136 215 36 ARG N N 121.889 0.1 1 137 216 37 GLN H H 8.51 0.01 1 138 216 37 GLN CA C 55.009 0.2 1 139 216 37 GLN CB C 24.793 0.2 1 140 216 37 GLN N N 119.261 0.1 1 141 217 38 ASP H H 8.069 0.01 1 142 217 38 ASP CA C 53.112 0.2 1 143 217 38 ASP CB C 37.269 0.2 1 144 217 38 ASP N N 119.329 0.1 1 145 218 39 LEU H H 7.797 0.01 1 146 218 39 LEU CA C 54.496 0.2 1 147 218 39 LEU CB C 38.2 0.2 1 148 218 39 LEU N N 121.3 0.1 1 149 219 40 LEU H H 8.011 0.01 1 150 219 40 LEU CA C 54.489 0.2 1 151 219 40 LEU CB C 37.618 0.2 1 152 219 40 LEU N N 118.149 0.1 1 153 220 41 PHE H H 7.975 0.01 1 154 220 41 PHE CA C 57.164 0.2 1 155 220 41 PHE CB C 35.134 0.2 1 156 220 41 PHE N N 119.34 0.1 1 157 221 42 GLN H H 8.114 0.01 1 158 221 42 GLN CA C 55.182 0.2 1 159 221 42 GLN CB C 24.983 0.2 1 160 221 42 GLN N N 118.883 0.1 1 161 222 43 ILE H H 8.168 0.01 1 162 222 43 ILE CA C 60.796 0.2 1 163 222 43 ILE CB C 34.423 0.2 1 164 222 43 ILE N N 118.371 0.1 1 165 223 44 SER H H 7.987 0.01 1 166 223 44 SER CA C 58.045 0.2 1 167 223 44 SER CB C 59.942 0.2 1 168 223 44 SER N N 116.357 0.1 1 169 224 45 TYR H H 8.049 0.01 1 170 224 45 TYR CA C 56.925 0.2 1 171 224 45 TYR CB C 34.708 0.2 1 172 224 45 TYR N N 120.96 0.1 1 173 225 46 GLY H H 8.12 0.01 1 174 225 46 GLY CA C 43.151 0.2 1 175 225 46 GLY N N 108.42 0.1 1 176 226 47 VAL H H 8.099 0.01 1 177 226 47 VAL CA C 61.887 0.2 1 178 226 47 VAL CB C 27.877 0.2 1 179 226 47 VAL N N 119.807 0.1 1 180 227 48 TYR H H 8.045 0.01 1 181 227 48 TYR CA C 57.021 0.2 1 182 227 48 TYR CB C 34.659 0.2 1 183 227 48 TYR N N 119.516 0.1 1 184 228 49 GLY H H 8.035 0.01 1 185 228 49 GLY CA C 42.909 0.2 1 186 228 49 GLY N N 106.412 0.1 1 187 229 50 PHE H H 8.003 0.01 1 188 229 50 PHE CA C 56.758 0.2 1 189 229 50 PHE CB C 36.415 0.2 1 190 229 50 PHE N N 120.283 0.1 1 191 230 51 VAL H H 7.856 0.01 1 192 230 51 VAL CA C 61.08 0.2 1 193 230 51 VAL CB C 28.403 0.2 1 194 230 51 VAL N N 117.379 0.1 1 195 231 52 ASP H H 7.941 0.01 1 196 231 52 ASP CA C 52.258 0.2 1 197 231 52 ASP CB C 37.838 0.2 1 198 231 52 ASP N N 120.974 0.1 1 199 232 53 VAL H H 7.782 0.01 1 200 232 53 VAL CA C 61.128 0.2 1 201 232 53 VAL CB C 28.354 0.2 1 202 232 53 VAL N N 118.117 0.1 1 203 233 54 VAL H H 7.744 0.01 1 204 233 54 VAL CB C 28.114 0.2 1 205 233 54 VAL N N 119.066 0.1 1 206 234 55 SER H H 7.84 0.01 1 207 234 55 SER CA C 56.901 0.2 1 208 234 55 SER CB C 60.464 0.2 1 209 234 55 SER N N 116.069 0.1 1 210 235 56 ILE H H 7.871 0.01 1 211 235 56 ILE CA C 59.516 0.2 1 212 235 56 ILE CB C 34.423 0.2 1 213 235 56 ILE N N 120.886 0.1 1 214 236 57 GLY H H 8.15 0.01 1 215 236 57 GLY CA C 42.98 0.2 1 216 236 57 GLY N N 108.97 0.1 1 217 237 58 LEU H H 7.756 0.01 1 218 237 58 LEU CA C 53.159 0.2 1 219 237 58 LEU CB C 38.782 0.2 1 220 237 58 LEU N N 120.209 0.1 1 221 238 59 ILE H H 7.681 0.01 1 222 238 59 ILE CA C 58.477 0.2 1 223 238 59 ILE CB C 34.902 0.2 1 224 238 59 ILE N N 118.195 0.1 1 225 239 60 VAL H H 7.928 0.01 1 226 239 60 VAL CA C 59.408 0.2 1 227 239 60 VAL CB C 28.742 0.2 1 228 239 60 VAL N N 121.15 0.1 1 229 240 61 HIS H H 8.298 0.01 1 230 240 61 HIS CA C 52.555 0.2 1 231 240 61 HIS CB C 26.463 0.2 1 232 240 61 HIS N N 122.011 0.1 1 233 241 62 GLU H H 8.4 0.01 1 234 241 62 GLU CA C 53.654 0.2 1 235 241 62 GLU CB C 26.463 0.2 1 236 241 62 GLU N N 123.061 0.1 1 237 242 63 GLY H H 8.373 0.01 1 238 242 63 GLY CA C 42.049 0.2 1 239 242 63 GLY N N 110.684 0.1 1 240 243 64 SER H H 8.133 0.01 1 241 243 64 SER CA C 55.158 0.2 1 242 243 64 SER CB C 61.081 0.2 1 243 243 64 SER N N 116.399 0.1 1 244 244 65 SER H H 7.942 0.01 1 245 244 65 SER CA C 56.925 0.2 1 246 244 65 SER CB C 61.603 0.2 1 247 244 65 SER N N 123.669 0.1 1 stop_ save_