data_27341 ####################### # Entry information # ####################### save_entry_information _Saveframe_category entry_information _Entry_title ; Backbone assignment of HSV-1 ICP27 103-155 ; _BMRB_accession_number 27341 _BMRB_flat_file_name bmr27341.str _Entry_type original _Submission_date 2017-12-15 _Accession_date 2017-12-15 _Entry_origination author _NMR_STAR_version 2.1.1 _Experimental_method NMR _Details 'Backbone assignment of free peptide' loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Tunnicliffe Richard B. . 2 Levy Colin . . 3 Mould Paul . . 4 McKenzie Edward A. . 5 Sandri-Goldin Rozanne M. . 6 Golovanov Alexander P. . stop_ loop_ _Saveframe_category_type _Saveframe_category_type_count assigned_chemical_shifts 1 stop_ loop_ _Data_type _Data_type_count "1H chemical shifts" 49 "13C chemical shifts" 147 "15N chemical shifts" 49 stop_ loop_ _Revision_date _Revision_keyword _Revision_author _Revision_detail 2018-10-10 update BMRB 'update entry citation' 2018-09-24 original author 'original release' stop_ loop_ _Related_BMRB_accession_number _Relationship 16696 'Assignment of shorter peptide construct from the same protein' stop_ _Original_release_date 2017-12-15 save_ ############################# # Citation for this entry # ############################# save_entry_citation _Saveframe_category entry_citation _Citation_full . _Citation_title ; Overlapping motifs on the herpes viral proteins ICP27 and ORF57 mediate interactions with the mRNA export adaptors ALYREF and UIF ; _Citation_status published _Citation_type journal _CAS_abstract_code . _MEDLINE_UI_code . _PubMed_ID ? loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Tunnicliffe Richard B. . 2 Levy Colin . . 3 Mould Paul . . 4 McKenzie Edward A. . 5 Sandri-Goldin Rozanne M. . 6 Golovanov Alexander P. . stop_ _Journal_abbreviation 'Sci. Rep.' _Journal_volume 8 _Journal_issue . _Journal_CSD . _Book_chapter_title . _Book_volume . _Book_series . _Book_ISBN . _Conference_state_province . _Conference_abstract_number . _Page_first 15005 _Page_last 15005 _Year 2018 _Details . save_ ################################## # Molecular system description # ################################## save_assembly _Saveframe_category molecular_system _Mol_system_name 'ICP27 103-155' _Enzyme_commission_number . loop_ _Mol_system_component_name _Mol_label 'ICP27 103-155' $ICP27_103-155 stop_ _System_molecular_weight 5977.83 _System_physical_state native _System_oligomer_state ? _System_paramagnetic no _System_thiol_state . _Database_query_date . _Details . save_ ######################## # Monomeric polymers # ######################## save_ICP27_103-155 _Saveframe_category monomeric_polymer _Mol_type polymer _Mol_polymer_class protein _Name_common ICP27_103-155 _Molecular_mass 5977.83 _Mol_thiol_state 'all free' loop_ _Biological_function 'Contains NLS.' 'Interacts with RNA, Aly/REF and SRPK1.' stop_ _Details . ############################## # Polymer residue sequence # ############################## _Residue_count 57 _Mol_residue_sequence ; GPLGSVWSRLGARRPSCSPE RHGGKVARLQPPPTKAQPAR GGRRGRRRGRGRGGPGA ; loop_ _Residue_seq_code _Residue_author_seq_code _Residue_label 1 99 GLY 2 100 PRO 3 101 LEU 4 102 GLY 5 103 SER 6 104 VAL 7 105 TRP 8 106 SER 9 107 ARG 10 108 LEU 11 109 GLY 12 110 ALA 13 111 ARG 14 112 ARG 15 113 PRO 16 114 SER 17 115 CYS 18 116 SER 19 117 PRO 20 118 GLU 21 119 ARG 22 120 HIS 23 121 GLY 24 122 GLY 25 123 LYS 26 124 VAL 27 125 ALA 28 126 ARG 29 127 LEU 30 128 GLN 31 129 PRO 32 130 PRO 33 131 PRO 34 132 THR 35 133 LYS 36 134 ALA 37 135 GLN 38 136 PRO 39 137 ALA 40 138 ARG 41 139 GLY 42 140 GLY 43 141 ARG 44 142 ARG 45 143 GLY 46 144 ARG 47 145 ARG 48 146 ARG 49 147 GLY 50 148 ARG 51 149 GLY 52 150 ARG 53 151 GLY 54 152 GLY 55 153 PRO 56 154 GLY 57 155 ALA stop_ _Sequence_homology_query_date . _Sequence_homology_query_revised_last_date . loop_ _Database_name _Database_accession_code _Database_entry_mol_name _Sequence_query_to_submitted_percentage _Sequence_subject_length _Sequence_identity _Sequence_positive _Sequence_homology_expectation_value UNP Q9J0X9 ICP27 . . . . . stop_ save_ #################### # Natural source # #################### save_natural_source _Saveframe_category natural_source loop_ _Mol_label _Organism_name_common _NCBI_taxonomy_ID _Superkingdom _Kingdom _Genus _Species _Strain $ICP27_103-155 'Human alphaherpesvirus 1' 10298 Viruses . Simplexvirus 'Human alphaherpesvirus 1' KOS1.1A stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Saveframe_category experimental_source loop_ _Mol_label _Production_method _Host_organism_name_common _Genus _Species _Strain _Vector_name $ICP27_103-155 'recombinant technology' . Escherichia coli 'BL21-CodonPlus (DE3)-RP' pGEX-6P-1 stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Saveframe_category sample _Sample_type solution _Details 'ICP27 103-155 (uniform 13C,15N)' loop_ _Mol_label _Concentration_value _Concentration_value_units _Isotopic_labeling $ICP27_103-155 0.45 mM '[U-99% 13C; U-99% 15N]' 'phosphate buffer' 20 mM 'natural abundance' NaCl 50 mM 'natural abundance' L-Arg 50 mM 'natural abundance' L-Glu 50 mM 'natural abundance' 2-mercaptoethanol 50 mM 'natural abundance' EDTA 10 mM 'natural abundance' stop_ save_ ############################ # Computer software used # ############################ save_TOPSPIN _Saveframe_category software _Name TOPSPIN _Version 3.1 loop_ _Vendor _Address _Electronic_address 'Bruker Biospin' . . stop_ loop_ _Task collection processing stop_ _Details . save_ save_SPARKY _Saveframe_category software _Name SPARKY _Version 3.115 loop_ _Vendor _Address _Electronic_address Goddard . . stop_ loop_ _Task 'chemical shift assignment' stop_ _Details . save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_spectrometer_1 _Saveframe_category NMR_spectrometer _Manufacturer Bruker _Model Avance _Field_strength 800 _Details . save_ ############################# # NMR applied experiments # ############################# save_2D_1H-15N_HSQC_1 _Saveframe_category NMR_applied_experiment _Experiment_name '2D 1H-15N HSQC' _Sample_label $sample_1 save_ save_3D_HNCO_2 _Saveframe_category NMR_applied_experiment _Experiment_name '3D HNCO' _Sample_label $sample_1 save_ save_3D_HNCA_3 _Saveframe_category NMR_applied_experiment _Experiment_name '3D HNCA' _Sample_label $sample_1 save_ save_3D_HNCACB_4 _Saveframe_category NMR_applied_experiment _Experiment_name '3D HNCACB' _Sample_label $sample_1 save_ save_3D_CBCA(CO)NH_5 _Saveframe_category NMR_applied_experiment _Experiment_name '3D CBCA(CO)NH' _Sample_label $sample_1 save_ save_3D_HN(CA)CO_6 _Saveframe_category NMR_applied_experiment _Experiment_name '3D HN(CA)CO' _Sample_label $sample_1 save_ ####################### # Sample conditions # ####################### save_sample_conditions_1 _Saveframe_category sample_conditions _Details 'phosphate buffer 20 mM; NaCl 50 mM; L-Arg 50 mM; L-Glu 50 mM; 2-mercaptoethanol 50 mM; EDTA 10 mM.' loop_ _Variable_type _Variable_value _Variable_value_error _Variable_value_units 'ionic strength' 0.15 . M pH 6.2 . pH pressure 1 . atm temperature 298 . K stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chemical_shift_reference_1 _Saveframe_category chemical_shift_reference _Details . loop_ _Mol_common_name _Atom_type _Atom_isotope_number _Atom_group _Chem_shift_units _Chem_shift_value _Reference_method _Reference_type _External_reference_sample_geometry _External_reference_location _External_reference_axis _Indirect_shift_ratio DSS C 13 'methyl protons' ppm 0.00 na indirect . . . 0.251449530 DSS H 1 'methyl protons' ppm 0.00 internal direct . . . 1.000000000 DSS N 15 'methyl protons' ppm 0.00 na indirect . . . 0.101329118 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chem_shift_list_1 _Saveframe_category assigned_chemical_shifts _Details . loop_ _Software_label $SPARKY stop_ loop_ _Experiment_label '2D 1H-15N HSQC' '3D HNCO' '3D HNCA' '3D HNCACB' '3D CBCA(CO)NH' '3D HN(CA)CO' stop_ loop_ _Sample_label $sample_1 stop_ _Sample_conditions_label $sample_conditions_1 _Chem_shift_reference_set_label $chemical_shift_reference_1 _Mol_system_component_name 'ICP27 103-155' _Text_data_format . _Text_data . loop_ _Atom_shift_assign_ID _Residue_author_seq_code _Residue_seq_code _Residue_label _Atom_name _Atom_type _Chem_shift_value _Chem_shift_value_error _Chem_shift_ambiguity_code 1 100 2 PRO C C 176.920 0.100 1 2 100 2 PRO CA C 62.990 0.100 1 3 100 2 PRO CB C 32.180 0.100 1 4 101 3 LEU H H 8.433 0.020 1 5 101 3 LEU C C 177.880 0.100 1 6 101 3 LEU CA C 55.330 0.100 1 7 101 3 LEU CB C 42.120 0.100 1 8 101 3 LEU N N 122.382 0.100 1 9 102 4 GLY H H 8.296 0.020 1 10 102 4 GLY C C 174.030 0.100 1 11 102 4 GLY CA C 45.070 0.100 1 12 102 4 GLY N N 109.495 0.100 1 13 103 5 SER H H 8.137 0.020 1 14 103 5 SER C C 174.910 0.100 1 15 103 5 SER CA C 58.090 0.100 1 16 103 5 SER CB C 63.890 0.100 1 17 103 5 SER N N 115.643 0.100 1 18 104 6 VAL H H 8.087 0.020 1 19 104 6 VAL C C 176.110 0.100 1 20 104 6 VAL CA C 62.950 0.100 1 21 104 6 VAL CB C 32.180 0.100 1 22 104 6 VAL N N 121.372 0.100 1 23 105 7 TRP H H 7.963 0.020 1 24 105 7 TRP HE1 H 10.052 0.020 1 25 105 7 TRP C C 176.410 0.100 1 26 105 7 TRP CA C 57.460 0.100 1 27 105 7 TRP CB C 29.380 0.100 1 28 105 7 TRP N N 123.072 0.100 1 29 105 7 TRP NE1 N 129.395 0.100 1 30 106 8 SER H H 7.847 0.020 1 31 106 8 SER C C 174.460 0.100 1 32 106 8 SER CA C 58.390 0.100 1 33 106 8 SER CB C 63.720 0.100 1 34 106 8 SER N N 116.866 0.100 1 35 107 9 ARG H H 7.995 0.020 1 36 107 9 ARG C C 176.430 0.100 1 37 107 9 ARG CA C 56.560 0.100 1 38 107 9 ARG CB C 30.330 0.100 1 39 107 9 ARG N N 122.448 0.100 1 40 10 10 LEU H H 8.009 0.020 1 41 10 10 LEU C C 177.920 0.100 1 42 10 10 LEU CA C 55.440 0.100 1 43 10 10 LEU CB C 42.040 0.100 1 44 10 10 LEU N N 121.651 0.100 1 45 109 11 GLY H H 8.165 0.020 1 46 109 11 GLY C C 173.720 0.100 1 47 109 11 GLY CA C 45.190 0.100 1 48 109 11 GLY N N 109.265 0.100 1 49 110 12 ALA H H 7.948 0.020 1 50 110 12 ALA C C 177.490 0.100 1 51 110 12 ALA CA C 52.250 0.100 1 52 110 12 ALA CB C 19.240 0.100 1 53 110 12 ALA N N 123.422 0.100 1 54 111 13 ARG H H 8.175 0.020 1 55 111 13 ARG C C 175.950 0.100 1 56 111 13 ARG CA C 55.790 0.100 1 57 111 13 ARG CB C 30.620 0.100 1 58 111 13 ARG N N 120.139 0.100 1 59 112 14 ARG H H 8.262 0.020 1 60 112 14 ARG C C 174.180 0.100 1 61 112 14 ARG CA C 53.830 0.100 1 62 112 14 ARG CB C 29.960 0.100 1 63 112 14 ARG N N 123.638 0.100 1 64 113 15 PRO C C 176.880 0.100 1 65 113 15 PRO CA C 63.070 0.100 1 66 113 15 PRO CB C 32.130 0.100 1 67 114 16 SER H H 8.262 0.020 1 68 114 16 SER C C 177.320 0.100 1 69 114 16 SER CA C 58.270 0.100 1 70 114 16 SER N N 116.066 0.100 1 71 115 17 CYS H H 8.290 0.020 1 72 115 17 CYS C C 174.010 0.100 1 73 115 17 CYS CA C 57.790 0.100 1 74 115 17 CYS CB C 28.150 0.100 1 75 115 17 CYS N N 120.608 0.100 1 76 116 18 SER H H 8.331 0.020 1 77 116 18 SER CA C 56.360 0.100 1 78 116 18 SER N N 119.344 0.100 1 79 117 19 PRO C C 176.860 0.100 1 80 117 19 PRO CA C 63.400 0.100 1 81 117 19 PRO CB C 31.910 0.100 1 82 20 20 GLU H H 8.403 0.020 1 83 20 20 GLU C C 176.440 0.100 1 84 20 20 GLU CA C 56.610 0.100 1 85 20 20 GLU CB C 29.950 0.100 1 86 20 20 GLU N N 120.759 0.100 1 87 119 21 ARG H H 8.199 0.020 1 88 119 21 ARG C C 176.010 0.100 1 89 119 21 ARG CA C 55.880 0.100 1 90 119 21 ARG CB C 30.510 0.100 1 91 119 21 ARG N N 121.963 0.100 1 92 120 22 HIS H H 8.389 0.020 1 93 120 22 HIS C C 176.800 0.100 1 94 120 22 HIS CA C 56.210 0.100 1 95 120 22 HIS CB C 30.660 0.100 1 96 120 22 HIS N N 120.257 0.100 1 97 121 23 GLY H H 8.409 0.020 1 98 121 23 GLY C C 174.580 0.100 1 99 121 23 GLY CA C 45.190 0.100 1 100 121 23 GLY N N 110.267 0.100 1 101 122 24 GLY H H 8.270 0.020 1 102 122 24 GLY C C 173.990 0.100 1 103 122 24 GLY CA C 45.080 0.100 1 104 122 24 GLY N N 108.732 0.100 1 105 123 25 LYS H H 8.139 0.020 1 106 123 25 LYS C C 176.610 0.100 1 107 123 25 LYS CA C 56.280 0.100 1 108 123 25 LYS CB C 32.960 0.100 1 109 123 25 LYS N N 120.909 0.100 1 110 124 26 VAL H H 8.058 0.020 1 111 124 26 VAL C C 175.750 0.100 1 112 124 26 VAL CA C 62.110 0.100 1 113 124 26 VAL CB C 32.610 0.100 1 114 124 26 VAL N N 121.444 0.100 1 115 125 27 ALA H H 8.287 0.020 1 116 125 27 ALA C C 177.310 0.100 1 117 125 27 ALA CA C 52.320 0.100 1 118 125 27 ALA CB C 19.080 0.100 1 119 125 27 ALA N N 128.287 0.100 1 120 126 28 ARG H H 8.190 0.020 1 121 126 28 ARG C C 175.950 0.100 1 122 126 28 ARG CA C 55.860 0.100 1 123 126 28 ARG CB C 30.700 0.100 1 124 126 28 ARG N N 120.633 0.100 1 125 127 29 LEU H H 8.189 0.020 1 126 127 29 LEU C C 176.850 0.100 1 127 127 29 LEU CA C 54.850 0.100 1 128 127 29 LEU CB C 42.170 0.100 1 129 127 29 LEU N N 123.746 0.100 1 130 128 30 GLN H H 8.269 0.020 1 131 128 30 GLN C C 173.290 0.100 1 132 128 30 GLN CA C 53.280 0.100 1 133 128 30 GLN CB C 28.840 0.100 1 134 128 30 GLN N N 122.663 0.100 1 135 131 33 PRO C C 177.040 0.100 1 136 131 33 PRO CA C 62.830 0.100 1 137 131 33 PRO CB C 31.910 0.100 1 138 132 34 THR H H 8.120 0.020 1 139 132 34 THR C C 174.410 0.100 1 140 132 34 THR CA C 61.790 0.100 1 141 132 34 THR CB C 69.800 0.100 1 142 132 34 THR N N 114.760 0.100 1 143 133 35 LYS H H 8.230 0.020 1 144 133 35 LYS C C 175.940 0.100 1 145 133 35 LYS CA C 56.020 0.100 1 146 133 35 LYS CB C 32.980 0.100 1 147 133 35 LYS N N 123.861 0.100 1 148 134 36 ALA H H 8.234 0.020 1 149 134 36 ALA C C 177.310 0.100 1 150 134 36 ALA CA C 52.190 0.100 1 151 134 36 ALA CB C 19.160 0.100 1 152 134 36 ALA N N 125.620 0.100 1 153 135 37 GLN H H 8.295 0.020 1 154 135 37 GLN C C 173.900 0.100 1 155 135 37 GLN CA C 53.420 0.100 1 156 135 37 GLN CB C 28.840 0.100 1 157 135 37 GLN N N 120.962 0.100 1 158 136 38 PRO C C 176.490 0.100 1 159 136 38 PRO CB C 31.990 0.100 1 160 136 38 PRO CA C 62.920 0.100 1 161 137 39 ALA H H 8.376 0.020 1 162 137 39 ALA C C 177.820 0.100 1 163 137 39 ALA CA C 52.390 0.100 1 164 137 39 ALA CB C 18.970 0.100 1 165 137 39 ALA N N 124.588 0.100 1 166 138 40 ARG H H 8.331 0.020 1 167 138 40 ARG C C 176.860 0.100 1 168 138 40 ARG CA C 56.100 0.100 1 169 138 40 ARG CB C 30.700 0.100 1 170 138 40 ARG N N 120.580 0.100 1 171 139 41 GLY H H 8.400 0.020 1 172 139 41 GLY C C 174.580 0.100 1 173 139 41 GLY CA C 45.170 0.100 1 174 139 41 GLY N N 110.001 0.100 1 175 140 42 GLY H H 8.239 0.020 1 176 140 42 GLY C C 174.150 0.100 1 177 140 42 GLY CA C 45.090 0.100 1 178 140 42 GLY N N 108.670 0.100 1 179 141 43 ARG H H 8.275 0.020 1 180 141 43 ARG C C 176.550 0.100 1 181 141 43 ARG CA C 56.200 0.100 1 182 141 43 ARG CB C 30.600 0.100 1 183 141 43 ARG N N 120.748 0.100 1 184 142 44 ARG H H 8.433 0.020 1 185 142 44 ARG C C 176.820 0.100 1 186 142 44 ARG CA C 56.310 0.100 1 187 142 44 ARG CB C 30.580 0.100 1 188 142 44 ARG N N 122.182 0.100 1 189 143 45 GLY H H 8.369 0.020 1 190 143 45 GLY C C 173.920 0.100 1 191 143 45 GLY CA C 45.130 0.100 1 192 143 45 GLY N N 109.933 0.100 1 193 144 46 ARG H H 8.172 0.020 1 194 144 46 ARG C C 176.410 0.100 1 195 144 46 ARG CA C 55.990 0.100 1 196 144 46 ARG CB C 30.740 0.100 1 197 144 46 ARG N N 120.727 0.100 1 198 145 47 ARG H H 8.427 0.020 1 199 145 47 ARG C C 176.290 0.100 1 200 145 47 ARG CA C 56.190 0.100 1 201 145 47 ARG CB C 30.660 0.100 1 202 145 47 ARG N N 122.619 0.100 1 203 146 48 ARG H H 8.415 0.020 1 204 146 48 ARG C C 176.720 0.100 1 205 146 48 ARG CA C 56.100 0.100 1 206 146 48 ARG CB C 30.650 0.100 1 207 146 48 ARG N N 122.683 0.100 1 208 147 49 GLY H H 8.444 0.020 1 209 147 49 GLY C C 173.980 0.100 1 210 147 49 GLY CA C 45.130 0.100 1 211 147 49 GLY N N 110.266 0.100 1 212 148 50 ARG H H 8.297 0.020 1 213 148 50 ARG C C 176.970 0.100 1 214 148 50 ARG CA C 56.180 0.100 1 215 148 50 ARG CB C 30.710 0.100 1 216 148 50 ARG N N 120.609 0.100 1 217 149 51 GLY H H 8.489 0.020 1 218 149 51 GLY C C 174.110 0.100 1 219 149 51 GLY CA C 45.160 0.100 1 220 149 51 GLY N N 110.172 0.100 1 221 150 52 ARG H H 8.260 0.020 1 222 150 52 ARG C C 176.850 0.100 1 223 150 52 ARG CA C 56.170 0.100 1 224 150 52 ARG CB C 30.680 0.100 1 225 150 52 ARG N N 120.558 0.100 1 226 151 53 GLY H H 8.418 0.020 1 227 151 53 GLY C C 174.100 0.100 1 228 151 53 GLY CA C 45.010 0.100 1 229 151 53 GLY N N 109.787 0.100 1 230 152 54 GLY H H 8.063 0.020 1 231 152 54 GLY C C 171.830 0.100 1 232 152 54 GLY CA C 44.350 0.100 1 233 152 54 GLY N N 108.847 0.100 1 234 153 55 PRO C C 177.670 0.100 1 235 153 55 PRO CA C 63.470 0.100 1 236 153 55 PRO CB C 31.910 0.100 1 237 154 56 GLY H H 8.458 0.020 1 238 154 56 GLY C C 172.840 0.100 1 239 154 56 GLY CA C 45.130 0.100 1 240 154 56 GLY N N 110.253 0.100 1 241 155 57 ALA H H 7.690 0.020 1 242 155 57 ALA C C 182.520 0.100 1 243 155 57 ALA CA C 53.630 0.100 1 244 155 57 ALA CB C 19.940 0.100 1 245 155 57 ALA N N 129.083 0.100 1 stop_ save_