BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 7090

Title: Solution structure of a purine rich hexaloop hairpin belonging to PGY/MDR1 mRNA and targeted by antisense oligonucleotides   PubMed: 17041234

Authors: Joli, Flore; Bouchemal, Nadia; Laigle, Alain; Hartmann, Brigitte; Hantz, Edith

Citation: Joli, Flore; Bouchemal, Nadia; Laigle, Alain; Hartmann, Brigitte; Hantz, Edith. "Solution structure of a purine rich hexaloop hairpin belonging to PGY/MDR1 mRNA and targeted by antisense oligonucleotides"  Nucleic Acids Res. 34, 5740-5751 (2006).

Assembly members:
18mer hairpin hexaloop, polymer, 18 residues, Formula weight is not available

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: obtained from a vendor

Entity Sequences (FASTA):
18mer hairpin hexaloop: GAGGUCGGGAUGGAUCUC

Data sets:
Data typeCount
13C chemical shifts90
15N chemical shifts21
1H chemical shifts149
31P chemical shifts17

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
118 mer hairpin hexaloop1

Entities:

Entity 1, 18 mer hairpin hexaloop 18 residues - Formula weight is not available

1   GAGGUCGGGA
2   UGGAUCUC

Samples:

sample_1: 18mer hairpin hexaloop, [U-98% 13C; U-98% 15N], 1 mM; phosphate buffer 10 mM; EDTA 0.01 mM

conditions_1: ionic strength: 10 mM; pH: 6.8

Experiments:

NameSampleSample stateSample conditions
1H15N HSQCsample_1not availableconditions_1
1H13C HSQCsample_1not availableconditions_1
1H1H13C HCCH COSYsample_1not availableconditions_1
1H1H13C NOESY HSQCsample_1not availableconditions_1
HNN COSYsample_1not availableconditions_1
1H1H13C HSCQ TOCSYsample_1not availableconditions_1
HCN TROSYsample_1not availableconditions_1
CU HNCCCHsample_1not availableconditions_1
GA HNC TOCSY CHsample_1not availableconditions_1

Software:

No software information available

NMR spectrometers:

  • Varian UnityInova 500 MHz

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