BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 6274

Title: 1H chemical shift assignments for the triloop DNA hairpin 5'- GTACACAGTAC - 3'   PubMed: 16530466

Authors: Lamoureux, Michele; Patard, Louis; Cordier, Christine

Citation: Lamoureux, Michele; Patard, Louis; Hernandez, Belen; Couesnon, Thierry; Santini, Guillaume; Cognet, Jean; Gouyette, Catherine; Cordier, Christine. "Spectroscopic and structural impact of a stem base-pair change in DNA hairpins: GTTC-ACA-GAAC versus GTAC-ACA-GTAC."  Spectrochim. Acta. A. Mol. Biomol. Spectrosc. 65, 84-94 (2006).

Assembly members:
DNA hairpin, polymer, 11 residues, 3493 Da.

Natural source:   Common Name: Vibrio cholerae   Taxonomy ID: 666   Superkingdom: Eubacteria   Kingdom: not available   Genus/species: vibrio cholerae

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
DNA hairpin: GTACACAGTAC

Data sets:
Data typeCount
1H chemical shifts101

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1hairpin DNA1

Entities:

Entity 1, hairpin DNA 11 residues - 3493 Da.

1   DGDTDADCDADCDADGDTDA
2   DC

Samples:

sample_1: DNA hairpin 8 mM; phosphate 20.6 mM; EDTA 1.0 mM; D2O 10 % v/v

sample_2: DNA hairpin 8 mM; phosphate 20.6 mM; EDTA 1.0 mM; D2O 99.9 % v/v

Ex-cond_1: ionic strength: 0.08 M; pH*: 7.2; temperature: 283 K

Experiments:

NameSampleSample stateSample conditions
1H-1H NOESYnot availablenot availableEx-cond_1
1H-1H TOCSYnot availablenot availableEx-cond_1
1H-1H DQF-COSYnot availablenot availableEx-cond_1

Software:

GIFA v4.2 - integration, Processing of the specta

NMR spectrometers:

  • Bruker DRX 500 MHz

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