BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 5980

Title: Structure Function Analysis of the Stemp Loop IIIc of HCV and GBV-B IRES   PubMed: 15476802

Authors: Thiviyanathan, Varatharasa

Citation: Rijnbrand, R.; Thiviyanathan, Varatharasa; Kaluarachchi, K.; Lemon, S.; Gorenstein, D.. "Mutational and structural analysis of stem-loop IIIC of the hepatitis C virus and GB virus B internal ribosome entry sites."  J. Mol. Biol. 343, 805-817 (2004).

Assembly members:
Ribo Nucleic Acid, polymer, 10 residues, Formula weight is not available

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: viruses   Kingdom: not available   Genus/species: GB Virus B

Experimental source:   Production method: enzymatic semisynthesis

Entity Sequences (FASTA):
Ribo Nucleic Acid: GGGCAAGCCC

Data sets:
Data typeCount
1H chemical shifts71

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1IIIc, monomer1

Entities:

Entity 1, IIIc, monomer 10 residues - Formula weight is not available

1   GGGCAAGCCC

Samples:

sample_1: Ribo Nucleic Acid0.2 – 0.8 mM

conidtion_1: pH: 6.8; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D NOESY,not availablenot availablenot available
2D TOCSYnot availablenot availablenot available
1H-31P HETRO TOCSYnot availablenot availablenot available
DQF-COSYnot availablenot availablenot available

Software:

FELIX v97 - peak assignemnt

NMR spectrometers:

  • Varian UnityPlus 600 MHz
  • Varian UnityPlus 750 MHz

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