BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 5926

Title: Residual Dipolar Couplings of rubredoxin   PubMed: 11716736

Authors: Tian, F.; Valafar, H.; Prestegard, J.

Citation: Tian, F.; Valafar, H.; Prestegard, J.. "A Dipolar Coupling Based Strategy for Simultaneous Resonance Assignment and Structure Determination of Protein Backbones"  J. Am. Chem. Soc. 123, 11791-11796 (2001).

Assembly members:
Rubredoxin, polymer, 53 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:   Common Name: Pyrococcus furiosus   Taxonomy ID: 2261   Superkingdom: Archaea   Kingdom: not available   Genus/species: Pyrococcus furiosus

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
Rubredoxin: AKYVCKICGYIYDEDAGDPD NGVSPGTKFEEIPDDWVCPI CGAPKSEFEKLED

Data typeCount
residual dipolar couplings419

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1Rubredoxin1
2ZINC (II) ION2

Entities:

Entity 1, Rubredoxin 53 residues - Formula weight is not available

1   ALALYSTYRVALCYSLYSILECYSGLYTYR
2   ILETYRASPGLUASPALAGLYASPPROASP
3   ASNGLYVALSERPROGLYTHRLYSPHEGLU
4   GLUILEPROASPASPTRPVALCYSPROILE
5   CYSGLYALAPROLYSSERGLUPHEGLULYS
6   LEUGLUASP

Entity 2, ZINC (II) ION - Zn - 65.409 Da.

1   ZN

Samples:

sample_1: Rubredoxin, [U-15N], 4.5 mM; Na phosphate buffer 50 mM; NaCl 100 mM; D2O 10%; H2O 90%

sample_2: Rubredoxin, [U-15N], 2.5 mM; Na phosphate buffer 50 mM; NaCl 50 mM; 3:1 DMPC:DHPC 7%; CTAB 0.21%; D2O 10%; H2O 90%

sample_3: Rubredoxin, [U-15N], 4.5 mM; Na phosphate buffer 50 mM; NaCl 100 mM; pf1 phage mM; D2O 10%; H2O 90%

Phage_cond: pH: 6.3; temperature: 298 K

Bicelle_cond: pH: 6.3; temperature: 310 K

Experiments:

NameSampleSample stateSample conditions
15N coupled HSQCnot availablenot availablenot available
soft HNCA-E.COSYnot availablenot availablenot available
modified HNCOnot availablenot availablenot available

Software:

No software information available

NMR spectrometers:

  • Varian Inova 500 MHz
  • Varian Inova 800 MHz

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