BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 5656

Title: Resonance Assignments for the Z Domain of Staphylococcal Protein A using a 2H, 13C, 15N enriched, selective methyl protonated sample   PubMed: 14718654

Authors: Zheng, Deyou; Swapna, G.V.T.; Hunter, Moseley; Montelione, Gaetano

Citation: Zheng, D.; Aramini, J.; Montelione, G.. "Validation of helical tilt angles in the solution NMR structure of the Z domain of Staphylococcal protein A by combined analysis of residual dipolar coupling and NOE data."  Protein Sci. 13, 549-554 (2004).

Assembly members:
staphylococcal protein A Z domain, polymer, 71 residues, Formula weight is not available

Natural source:   Common Name: S. aureus   Taxonomy ID: 1280   Superkingdom: Eubacteria   Kingdom: not available   Genus/species: Staphylococcus aureus

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
staphylococcal protein A Z domain: KAIFVLNAQHDEAVDNKFNK EQQNAFYEILHLPNLNEEQR NAFIQSLKDDPSQSANLLAE AKKLNDAQAPK

Data sets:
Data typeCount
1H chemical shifts168
13C chemical shifts235
15N chemical shifts83

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1staphylococcal protein A Z domain1

Entities:

Entity 1, staphylococcal protein A Z domain 71 residues - Formula weight is not available

1   LYSALAILEPHEVALLEUASNALAGLNHIS
2   ASPGLUALAVALASPASNLYSPHEASNLYS
3   GLUGLNGLNASNALAPHETYRGLUILELEU
4   HISLEUPROASNLEUASNGLUGLUGLNARG
5   ASNALAPHEILEGLNSERLEULYSASPASP
6   PROSERGLNSERALAASNLEULEUALAGLU
7   ALALYSLYSLEUASNASPALAGLNALAPRO
8   LYS

Samples:

sample_one: staphylococcal protein A Z domain, [U-13C; U-15N; U-2H] with Val, Leu, Ile(delta) methyl protonated, 1.1 mM

sample_conditions_one: pH: 6.5; temperature: 303 K

Experiments:

NameSampleSample stateSample conditions
1H-15N HSQCnot availablenot availablenot available
1H-13C HSQCnot availablenot availablenot available
HNCOnot availablenot availablenot available
HN(CA)COnot availablenot availablenot available
HNCACBnot availablenot availablenot available
HN(CO)CACBnot availablenot availablenot available
H(CCCO)NH-TOCSYnot availablenot availablenot available
(H)CC(CO)NH-TOCSYnot availablenot availablenot available

Software:

AutoAssign v1.9 - automated backbone assignments

NMR spectrometers:

  • Varian INOVA 600 MHz

Related Database Links:

BMRB 19043 4023
PDB
DBJ BAC76617 BAC76619 BAL27690 BAL27694 BAL27697
EMBL CAA49867 CAA65431
GB AAA72944 AAB00807 AAR10383 AAR10384 AAR10385
REF WP_000298178 WP_000298179 WP_000316486 WP_000363686 WP_000496862