BMRB Entry 30660

Title:
Solution NMR structure of the nodule-specific cysteine-rich peptide NCR044 from Medicago truncatula
Deposition date:
2019-08-29
Original release date:
2019-10-04
Authors:
Buchko, G.; Shah, D.
Citation:

Citation: Velivelli, Siva; Czymmek, Kirk; Li, Hui; Shaw, Jared; Buchko, Garry; Shah, Dilip. "Antifungal symbiotic peptide NCR044 exhibits unique structure and multifaceted mechanisms of action that confer plant protection"  Proc. Natl. Acad. Sci. U.S.A. 117, 16043-16054 (2020).
PubMed: 32571919

Assembly members:

Assembly members:
entity_1, polymer, 36 residues, 4329.222 Da.

Natural source:

Natural source:   Common Name: Barrel medic   Taxonomy ID: 3880   Superkingdom: Eukaryota   Kingdom: Viridiplantae   Genus/species: Medicago truncatula

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: AFIQLSKPCISDKECSIVKN YRARCRKGYCVRRRIR

Data typeCount
13C chemical shifts160
15N chemical shifts36
1H chemical shifts235

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1entity_11

Entities:

Entity 1, entity_1 36 residues - 4329.222 Da.

1   ALAPHEILEGLNLEUSERLYSPROCYSILE
2   SERASPLYSGLUCYSSERILEVALLYSASN
3   TYRARGALAARGCYSARGLYSGLYTYRCYS
4   VALARGARGARGILEARG

Samples:

sample_1: sodium chloride 50 ± 1 mM; sodium acetate 20 ± 1 mM; DEF19, [U-99% 13C; U-99% 15N], 1 ± 0.2 mM

sample_2: sodium chloride 50 ± 1 mM; sodium acetate 20 ± 1 mM; DEF19-2, [U-99% 13C; U-99% 15N], 1 ± 0.2 mM

sample_conditions_1: ionic strength: 70 mM; pH: 5.4; pressure: 1 atm; temperature: 293 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1anisotropicsample_conditions_1
3D HNCOsample_1anisotropicsample_conditions_1
3D HNCACBsample_1anisotropicsample_conditions_1
3D C(CO)NHsample_1anisotropicsample_conditions_1
2D 1H-13C HSQC aliphaticsample_1anisotropicsample_conditions_1
3D 1H-13C NOESY aliphaticsample_2anisotropicsample_conditions_1
3D 1H-13C NOESY aromaticsample_1anisotropicsample_conditions_1
Deuterium exchangesample_1anisotropicsample_conditions_1
3D 1H-15N NOESYsample_1anisotropicsample_conditions_1
3D 1H-13C NOESY aliphaticsample_1anisotropicsample_conditions_1
3D H(CCO)NHsample_1anisotropicsample_conditions_1

Software:

Sparky v3.13, Goddard - data analysis

CYANA v2.1, Guntert, Mumenthaler and Wuthrich - structure calculation

Felix v2007, Accelrys Software Inc. - processing

CNS v1.1, Brunger, Adams, Clore, Gros, Nilges and Read - refinement

PSVS v1.5, Bhattacharya and Montelione - data analysis

NMR spectrometers:

  • Varian INOVA 600 MHz
  • Bruker AVANCE 750 MHz
  • Varian INOVA 750 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks