BMRB Entry 28092

Name: Art v 3 allergen from Artemisia vulgaris
Published: 2020-10-09

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR28092

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Art v 3 allergen from Artemisia vulgaris

Deposition date:

2020-03-06

Original release date:

2020-10-09

Authors:

Di Muzio, Martina; Wildner, Sabrina; Gadermaier, Gabriele; Schubert, Mario

Citation:

Citation: Di Muzio, Martina; Wildner, Sabrina; Huber, Sara; Hauser, Michael; Vejvar, Eva; Auzinger, Werner; Regl, Christof; Laimer, Josef; Zennaro, Danila; Wopfner, Nicole; Huber, Christian; van Ree, Ronald; Mari, Adriano; Lackner, Peter; Ferreira, Fatima; Schubert, Mario; Gadermaier, Gabriele. "Hydrogen/deuterium exchange memory NMR reveals structural epitopes involved in IgE cross-reactivity of allergenic lipid transfer proteins" J. Biol. Chem. 295, 17398-17398 (2020).
PubMed: 33037072

Assembly members:

Assembly members:
Artv3, polymer, 92 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Artemisia vulgaris Taxonomy ID: 4220 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Artemisia vulgaris

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pHis Parallel2

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Artv3: MIKCSDVSNKISACLSYLKQ GGEVPADCCTGVKGLNDAAK TTPDRQTACNCLKTTFKSNK DFKSDFAASLPSKCGVNIPY KISLETDCNKVK

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_278K
- assigned_chem_shift_list_298K

Data type	Count
13C chemical shifts	537
15N chemical shifts	192
1H chemical shifts	679

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Artv3	1

Entities:

Entity 1, Artv3 92 residues - Formula weight is not available

1

MET

ILE

LYS

CYS

SER

ASP

VAL

SER

ASN

LYS

2

ILE

SER

ALA

CYS

LEU

SER

TYR

LEU

LYS

GLN

3

GLY

GLU

VAL

PRO

ALA

ASP

CYS

THR

4

GLY

VAL

LYS

GLY

LEU

ASN

ASP

ALA

LYS

5

THR

PRO

ASP

ARG

GLN

THR

ALA

CYS

ASN

6

CYS

LEU

LYS

THR

PHE

LYS

SER

ASN

LYS

7

ASP

PHE

LYS

SER

ASP

PHE

ALA

SER

LEU

8

PRO

SER

LYS

CYS

GLY

VAL

ASN

ILE

PRO

TYR

9

LYS

ILE

SER

LEU

GLU

THR

ASP

CYS

ASN

LYS

10

VAL

LYS

Samples:

sample_1: Artv3, [U-98% 13C; U-98% 15N], 1.36 mM; potassium phosphate 20 mM; sodium chloride 10 mM

sample_conditions_1: ionic strength: 30 mM; pH: 6.0; pressure: 1 atm; temperature: 278 K

sample_conditions_2: ionic strength: 30 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_2
3D HNCACB	sample_1	isotropic	sample_conditions_2

Software:

TOPSPIN v3.2, Bruker Biospin - collection, processing

SPARKY v3.115, Goddard - chemical shift assignment

NMR spectrometers:

Bruker Avance 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks