BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 27828

Title: Chemical shifts for d(CGATATCG)2; free form

Authors: Andralojc, Witold

Citation: Laskowski, Tomasz; Andralojc, Witold; Andralojc, Witold; Laskowski, Tomasz. "A new insight into the mode of binding of a potent antitumor agent, triazoloacridinone C-1305, to dsDNA. Structural and sequence-specificity studies"  Not known ., .-..

Assembly members:
d(CGATATCG)2, polymer, 8 residues, Formula weight is not available

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
d(CGATATCG)2: CGATATCG

Data sets:
Data typeCount
1H chemical shifts50

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1DNA d(CGATATCG)2, chain A1
2DNA d(CGATATCG)2, chain B1

Entities:

Entity 1, DNA d(CGATATCG)2, chain A 8 residues - Formula weight is not available

1   DCDGDADTDADTDCDG

Samples:

free_DNA: d(CGATATCG)2 1.25 mM; cacodylate 2.5 mM; sodium chloride 10 mM

sample_conditions_1: ionic strength: 0.01 M; pH: 5.0; pressure: 1 atm; temperature: 278 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H NOESYfree_DNAisotropicsample_conditions_1

Software:

SPARKY v3.13, Goddard - chemical shift assignment

NMR spectrometers:

  • Bruker Avance 700 MHz

Related Database Links: