BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 27783

Title: Backbone 1H, 15N, 13C Chemical Shift Assignment of the Pr state of monomeric PAS-GAF-PHY from Deinococcus radiodurans

Deposition date: 2019-02-13 Original release date: 2019-12-10

Authors: Gustavsson, Emil; Isaksson, Linnea; Persson, Cecilia; Mayzel, Maxim; Brath, Ulrika; Vrhovac, Lidija; Ihalainen, Janne; Karlsson, Goran; Orekhov, Vladislav; Westenhoff, Sebastian

Citation: Gustavsson, Emil; Isaksson, Linnea; Persson, Cecilia; Mayzel, Maxim; Brath, Ulrika; Vrhovac, Lidija; Ihalainen, Janne; Karlsson, Goran; Orekhov, Vladislav; Westenhoff, Sebastian. "A photoactivated soft-to-rigid transition in the bacteriophytochrome PHY tongue - a solution NMR study of a 57 kDa protein"  Biophys. J. ., .-..

Assembly members:
Phytochrome, polymer, 509 residues, 57000 Da.

Natural source:   Common Name: Deinococcus radiodurans   Taxonomy ID: 1299   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Deinococcus radiodurans

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
Phytochrome: MSRDPLPFFPPLYLGGPEIT TENCEREPIHIPGSIQPHGA LLTADGHSGEVLQMSLNAAT FLGQEPTVLRGQTLAALLPE QWPALQAALPPGCPDALQYR ATLDWPAAGHLSLTVHRVGE LLILEFEPTEAWDSTGPHAL RNAMSALESAPNLRALAEVA TQTVRELTGFDRVMLYKFAP DATGEVIAEARREGLHAFLG HRFPASDIPAQARALYTRHL LRLTADTRAAAVPLDPVLNP QTNAPTPLGGAVLRATSPMH MQYLRNMGVGSSLSVSVVVG GQLWGLIACHHQTPYVLPPD LRTTLEYLGRELSEQVQVKE AADVAAFRQSLREHHARVAL AAAHSLSPHDTLSDPALDLL GLMRAGGLILRFEGRWQTLG EVPPAPAVDALLAWLETQPG ALVQTDALGQLWPAGADLAP SAAGLLAISVGEGWSECLVW LRPELRLEVAWGGATPDQAK DDLGPRHSFDTYLEEKRGYA EPWHPGEIEEAQDLRDTLTG ALEHHHHHH

Data sets:
Data typeCount
13C chemical shifts791
15N chemical shifts251
1H chemical shifts251

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1PAS-GAF-PHY1

Entities:

Entity 1, PAS-GAF-PHY 509 residues - 57000 Da.

1   METSERARGASPPROLEUPROPHEPHEPRO
2   PROLEUTYRLEUGLYGLYPROGLUILETHR
3   THRGLUASNCYSGLUARGGLUPROILEHIS
4   ILEPROGLYSERILEGLNPROHISGLYALA
5   LEULEUTHRALAASPGLYHISSERGLYGLU
6   VALLEUGLNMETSERLEUASNALAALATHR
7   PHELEUGLYGLNGLUPROTHRVALLEUARG
8   GLYGLNTHRLEUALAALALEULEUPROGLU
9   GLNTRPPROALALEUGLNALAALALEUPRO
10   PROGLYCYSPROASPALALEUGLNTYRARG
11   ALATHRLEUASPTRPPROALAALAGLYHIS
12   LEUSERLEUTHRVALHISARGVALGLYGLU
13   LEULEUILELEUGLUPHEGLUPROTHRGLU
14   ALATRPASPSERTHRGLYPROHISALALEU
15   ARGASNALAMETSERALALEUGLUSERALA
16   PROASNLEUARGALALEUALAGLUVALALA
17   THRGLNTHRVALARGGLULEUTHRGLYPHE
18   ASPARGVALMETLEUTYRLYSPHEALAPRO
19   ASPALATHRGLYGLUVALILEALAGLUALA
20   ARGARGGLUGLYLEUHISALAPHELEUGLY
21   HISARGPHEPROALASERASPILEPROALA
22   GLNALAARGALALEUTYRTHRARGHISLEU
23   LEUARGLEUTHRALAASPTHRARGALAALA
24   ALAVALPROLEUASPPROVALLEUASNPRO
25   GLNTHRASNALAPROTHRPROLEUGLYGLY
26   ALAVALLEUARGALATHRSERPROMETHIS
27   METGLNTYRLEUARGASNMETGLYVALGLY
28   SERSERLEUSERVALSERVALVALVALGLY
29   GLYGLNLEUTRPGLYLEUILEALACYSHIS
30   HISGLNTHRPROTYRVALLEUPROPROASP
31   LEUARGTHRTHRLEUGLUTYRLEUGLYARG
32   GLULEUSERGLUGLNVALGLNVALLYSGLU
33   ALAALAASPVALALAALAPHEARGGLNSER
34   LEUARGGLUHISHISALAARGVALALALEU
35   ALAALAALAHISSERLEUSERPROHISASP
36   THRLEUSERASPPROALALEUASPLEULEU
37   GLYLEUMETARGALAGLYGLYLEUILELEU
38   ARGPHEGLUGLYARGTRPGLNTHRLEUGLY
39   GLUVALPROPROALAPROALAVALASPALA
40   LEULEUALATRPLEUGLUTHRGLNPROGLY
41   ALALEUVALGLNTHRASPALALEUGLYGLN
42   LEUTRPPROALAGLYALAASPLEUALAPRO
43   SERALAALAGLYLEULEUALAILESERVAL
44   GLYGLUGLYTRPSERGLUCYSLEUVALTRP
45   LEUARGPROGLULEUARGLEUGLUVALALA
46   TRPGLYGLYALATHRPROASPGLNALALYS
47   ASPASPLEUGLYPROARGHISSERPHEASP
48   THRTYRLEUGLUGLULYSARGGLYTYRALA
49   GLUPROTRPHISPROGLYGLUILEGLUGLU
50   ALAGLNASPLEUARGASPTHRLEUTHRGLY
51   ALALEUGLUHISHISHISHISHISHIS

Samples:

Pr_state: Phytochrome, [U-13C; U-15N; U-2H], 0.8 mM; sodium chloride 50 mM; sodium phosphate 25 mM; azide 0.02%; Complete EDTA free 2 tablet/100mL

sample_conditions_1: ionic strength: 0.075 M; pH: 6.9; pressure: 1 atm; temperature: 273 K

Experiments:

NameSampleSample stateSample conditions
3D HNCOPr_stateisotropicsample_conditions_1
3D HNCAPr_stateisotropicsample_conditions_1
3D HNCACBPr_stateisotropicsample_conditions_1
3D HN(CO)CAPr_stateisotropicsample_conditions_1
3D HN(CO)CACBPr_stateisotropicsample_conditions_1
3D HN(CA)COPr_stateisotropicsample_conditions_1
2D 1H-15N TROSYPr_stateisotropicsample_conditions_1
3D 1H-15N NOESY TROSYPr_stateisotropicsample_conditions_1

Software:

CCPN, CCPN - chemical shift assignment

NMR spectrometers:

  • Bruker Avance 800 MHz

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts