BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 27212

Title: Backbone 13C and 15N Chemical Shift Assignments for fibrillar Amyloid Beta (1-42)

Authors: Gremer, Lothar; Schoelzel, Daniel; Schenk, Carla; Reinartz, Elke; Labahn, Joerg; Ravelli, Raimond; Tusche, Markus; Lopez-Iglesias, Carmen; Hoyer, Wolfgang; Heise, Henrike; Willbold, Dieter; Schroeder, Gunnar

Citation: Gremer, Lothar; Schoelzel, Daniel; Schenk, Carla; Reinartz, Elke; Labahn, Joerg; Ravelli, Raimond; Tusche, Markus; Lopez-Iglesias, Carmen; Hoyer, Wolfgang; Heise, Henrike; Willbold, Dieter; Schroeder, Gunnar. "Fibril Structure of Amyloid Beta (1-42) by Cryo-EM"  Science ., .-..

Assembly members:
Abeta(1-42), polymer, 42 residues, 4457.04 Da.

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
Abeta(1-42): DAEFRHDSGYEVHHQKLVFF AEDVGSNKGAIIGLMVGGVV IA

Data sets:
Data typeCount
13C chemical shifts183
15N chemical shifts48

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1Abeta(1-42)1

Entities:

Entity 1, Abeta(1-42) 42 residues - 4457.04 Da.

human amyloid beta (1-42)

1   ASPALAGLUPHEARGHISASPSERGLYTYR
2   GLUVALHISHISGLNLYSLEUVALPHEPHE
3   ALAGLUASPVALGLYSERASNLYSGLYALA
4   ILEILEGLYLEUMETVALGLYGLYVALVAL
5   ILEALA

Samples:

sample_1: Abeta(1-42), [U-13C; U-15N], 10 mg

sample_conditions_1: pH: 2; pressure: 1 atm; temperature: 278 K

Experiments:

NameSampleSample stateSample conditions
2D 13C-13C PDSDsample_1isotropicsample_conditions_1
2D 13C-13C PDSDsample_1isotropicsample_conditions_1
1D HN CPsample_1isotropicsample_conditions_1
2D SPC5_2sample_1isotropicsample_conditions_1
2D NCACX DARRsample_1isotropicsample_conditions_1
2D NCACB DREAMsample_1isotropicsample_conditions_1
2D NCOCX DARRsample_1isotropicsample_conditions_1
2D NCOCX DARRsample_1isotropicsample_conditions_1
3D NCOCX DARRsample_1isotropicsample_conditions_1
2D NcoCACB BSH CP DREAMsample_1isotropicsample_conditions_1
3D NcoCACB BSH CP DREAMsample_1isotropicsample_conditions_1
2D 13C-13C PARsample_1isotropicsample_conditions_1
2D 13C-13C PDSDsample_1isotropicsample_conditions_1

Software:

CcpNMR v2.4.2., CCPN - chemical shift assignment

NMR spectrometers:

  • Oxford AS600 600 MHz
  • Varian 600/54 Premium Shielded 600 MHz
  • Oxford 2.2K 800/63 800 MHz

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