BMRB Entry 18009

Name: NMR structure of the lambda 5 22-45 peptide
Published: 2012-10-22

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PDB ID: 2lkq
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR18009
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR structure of the lambda 5 22-45 peptide

Deposition date:

2011-10-19

Original release date:

2012-10-22

Authors:

Elantak, Latifa; Espeli, Marion; Boned, Annie; Bornet, Olivier; Breton, Caroline; Feracci, Mikael; Roche, Philippe; Guerlesquin, Francoise; Schiff, Claudine

Citation:

Citation: Elantak, Latifa; Espeli, Marion; Boned, Annie; Bornet, Olivier; Bonzi, Jeremy; Gauthier, Laurent; Feracci, Mikael; Roche, Philippe; Guerlesquin, Francoise; Schiff, Claudine. "Structural basis for galectin-1-dependent pre-B cell receptor (pre-BCR) activation." J. Biol. Chem. 287, 44703-44713 (2012).
PubMed: 23124203

Assembly members:

Assembly members:
entity, polymer, 24 residues, 2856.299 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity: SRSSLRSRWGRFLLQRGSWT GPRC

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
1H chemical shifts	159

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	lambda_5_22-45_peptide	1

Entities:

Entity 1, lambda_5_22-45_peptide 24 residues - 2856.299 Da.

1

SER

ARG

SER

LEU

ARG

SER

ARG

TRP

GLY

2

ARG

PHE

LEU

GLN

ARG

GLY

SER

TRP

THR

3

GLY

PRO

ARG

CYS

Samples:

sample_1: potassium phosphate 20 mM; H2O 90%; D2O 10%

sample_conditions_1: pH: 5.2; pressure: 1 atm; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

Software:

CYANA, Guntert, Mumenthaler and Wuthrich - structure solution

NMR spectrometers:

Bruker Avance 600 MHz

PDB	2LKQ
DBJ	BAI46548
GB	AAA36096 AAA36100 AAH12293 ABM84504 ABM85566
REF	NP_064455 XP_003282108 XP_003814324 XP_004063189 XP_004063194
SP	P15814
AlphaFold	P15814