BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 17406

Title: Structure of a 4X4 Nucleotide RNA Internal Loop from an R2 Retrotransposon   PubMed: 21778280

Authors: Lerman, Yelena; Kennedy, Scott; Turner, Douglas

Citation: Lerman, Yelena; Kennedy, Scott; Shankar, Neelaabh; Parisien, Marc; Major, Francois; Turner, Douglas. "NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions."  RNA 17, 1664-1677 (2011).

Assembly members:
RNA_(5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3'), polymer, 11 residues, 3522.178 Da.
RNA_(5'-R(*CP*GP*GP*AP*GP*GP*AP*CP*AP*CP*U)-3'), polymer, 11 residues, 3545.218 Da.

Natural source:   Common Name: silkworm   Taxonomy ID: 7091   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Bombyx mori

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
RNA_(5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3'): GUGAAGCCCGU
RNA_(5'-R(*CP*GP*GP*AP*GP*GP*AP*CP*AP*CP*U)-3'): CGGAGGACACU

Data sets:
Data typeCount
13C chemical shifts24
15N chemical shifts8
1H chemical shifts156
31P chemical shifts20

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