BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 16845

Title: Cementoin backbone chemical assignment and spin relaxation   PubMed: 20932308

Authors: Bellemare, Audrey; Morin, Sebastien; Gagne, Stephane; Bourbonnais, Yves

Citation: Bellemare, Audrey; Vernoux, Nathalie; Morin, Sebastien; Gagne, Stephane; Bourbonnais, Yves. "Structural and antimicrobial properties of human pre-elafin/trappin-2 and derived peptides against Pseudomonas aeruginosa."  BMC Microbiol. 10, 253-253 (2010).

Assembly members:
cementoin, polymer, 38 residues, 3948.5 Da.

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
cementoin: AVTGVPVKGQDTVKGRVPFN GQDPVKGQVSVKGQDKVK

Data sets:
Data typeCount
13C chemical shifts93
15N chemical shifts33
1H chemical shifts33
heteronuclear NOE values34
T1 relaxation values34
T2 relaxation values34

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1cementoin1

Entities:

Entity 1, cementoin 38 residues - 3948.5 Da.

1   ALAVALTHRGLYVALPROVALLYSGLYGLN
2   ASPTHRVALLYSGLYARGVALPROPHEASN
3   GLYGLNASPPROVALLYSGLYGLNVALSER
4   VALLYSGLYGLNASPLYSVALLYS

Samples:

sample_1: cementoin, [U-98% 13C; U-98% 15N], 0.5 mM; DSS 60 uM; sodium phosphate 50 mM; TFE, [U-2H], 50%; H2O 50%

sample_conditions_1: ionic strength: 50 mM; pH: 6.4; temperature: 275.15 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1

Software:

NMRView v5.2.2, One Moon Scientific Inc. - peak picking

NMRPipe v2.3, The Ad Bax Group - processing

Smartnotebook v5.0.5, PENCE - chemical shift assignment

NMR spectrometers:

  • Varian INOVA 600 MHz

Related Database Links:

DBJ BAA02441 BAJ20362
EMBL CAA11183 CAA79223 CAG47030
GB AAA36483 AAB26371 AAH10952 AAX36425 AAX36873
REF NP_001103981 NP_001129323 NP_001162039 NP_002629 XP_003825998
SP P19957