BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 15585

Title: Solution structure of protein ATU1810 from Agrobacterium tumefaciens; Northeast Structural Genomics Target AtR23; Ontario Center for Structural Proteomics Target ATC1776

Authors: Lemak, Alexander; Yee, Adelinda; Gutmanas, Aleksandras; Fares, Christophe; Karra, Murphy; Semesi, Antony; Arrowsmith, Cheryl

Citation: Lemak, Alexander; Yee, Adelinda; Gutmanas, Aleksandras; Fares, Christophe; Karra, Murphy; Semesi, Antony; Arrowsmith, Cheryl. "Solution structure of protein ATU1810 form Agrobacterium tumefaciens"  . ., .-..

Assembly members:
Atu1810, polymer, 106 residues, 9116.552 Da.

Natural source:   Common Name: Agrobacterium tumefaciens   Taxonomy ID: 358   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Agrobacterium tumefaciens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
Atu1810: QGHMSAKIYRPAKTAMQSGT AKTNVWVLEFDAEVPRKIDP IMGYTSSSDMKQQVKLTFET QEQAEAYAQRKGIEYRVILP KEATRKVVSYTDNFRFNRTQ PWTHGS

Data sets:
Data typeCount
13C chemical shifts416
15N chemical shifts100
1H chemical shifts669
residual dipolar couplings71

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Atu18101

Entities:

Entity 1, Atu1810 106 residues - 9116.552 Da.

1   GLNGLYHISMETSERALALYSILETYRARG
2   PROALALYSTHRALAMETGLNSERGLYTHR
3   ALALYSTHRASNVALTRPVALLEUGLUPHE
4   ASPALAGLUVALPROARGLYSILEASPPRO
5   ILEMETGLYTYRTHRSERSERSERASPMET
6   LYSGLNGLNVALLYSLEUTHRPHEGLUTHR
7   GLNGLUGLNALAGLUALATYRALAGLNARG
8   LYSGLYILEGLUTYRARGVALILELEUPRO
9   LYSGLUALATHRARGLYSVALVALSERTYR
10   THRASPASNPHEARGPHEASNARGTHRGLN
11   PROTRPTHRHISGLYSER

Samples:

sample_1: Atu1810, [U-13C; U-15N], 0.5 mM; TRIS 10 mM; sodium chloride 300 mM; sodium azide 0.1%; benzamidine 10 mM; D2O, [U-100% 2H], 10%; H2O 90%

sample_2: Atu1810, [U-13C; U-15N], 0.5 mM; TRIS 10 mM; sodium chloride 300 mM; sodium azide 0.1%; benzamidine 10 mM; D2O, [U-100% 2H], 100%

sample_conditions_1: ionic strength: 300 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_2isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D H(CCO)NHsample_1isotropicsample_conditions_1
3D (H)C(CCO)NHsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_2isotropicsample_conditions_1
3D (H)CCH-TOCSYsample_2isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESY_aliphaticsample_1isotropicsample_conditions_1
3D 1H-13C NOESY_aromaticsample_1isotropicsample_conditions_1
2D 1H-15N HSQC(IPAP)sample_1anisotropicsample_conditions_1
3D TROSY-HNCOsample_1anisotropicsample_conditions_1

Software:

CNS v1.1, Brunger, Adams, Clore, Gros, Nilges and Read - refinement, structure solution

SPARKY, Goddard - peak picking

TALOS, Cornilescu, Delaglio and Bax - structure solution

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMR spectrometers:

  • Bruker Avance 600 MHz
  • Bruker Avance 800 MHz
  • Bruker Avance 500 MHz

Related Database Links:

PDB
EMBL CDI08717 CDN94390
GB AAK87578 ADY64758 AHK01663 AKC07510 EGL63649
REF NP_354793 WP_003495468 WP_003507982 WP_004442361 WP_006314275