BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 15407

Title: Third SH3 domain of CD2AP   PubMed: 17922258

Authors: van Nuland, Nico; Ortega Roldan, Jose-Luis; Romero Romero, Maria-Luisa; AB, Eiso; Ora, Ari; Lopez Mayorga, Obdulio; Azuaga, Ana

Citation: Ortega Roldan, Jose-Luis; Romero Romero, Maria-Luisa; Ora, Ari; AB, Eiso; Lopez Mayorga, Obdulio; Azuaga, Ana; van Nuland, Nico. "The high resolution NMR structure of the third SH3 domain of CD2AP"  J. Biomol. NMR 39, 331-336 (2007).

Assembly members:
SH3-C, polymer, 64 residues, 7148.993 Da.

Natural source:   Common Name: Mouse   Taxonomy ID: 10090   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Mus musculus

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
SH3-C: GAMGAKEYCRTLFPYTGTNE DELTFREGEIIHLISKETGE AGWWKGELNGKEGVFPDNFA VQIS

Data sets:
Data typeCount
13C chemical shifts275
15N chemical shifts68
1H chemical shifts433

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1SH3-C1

Entities:

Entity 1, SH3-C 64 residues - 7148.993 Da.

1   GLYALAMETGLYALALYSGLUTYRCYSARG
2   THRLEUPHEPROTYRTHRGLYTHRASNGLU
3   ASPGLULEUTHRPHEARGGLUGLYGLUILE
4   ILEHISLEUILESERLYSGLUTHRGLYGLU
5   ALAGLYTRPTRPLYSGLYGLULEUASNGLY
6   LYSGLUGLYVALPHEPROASPASNPHEALA
7   VALGLNILESER

Samples:

sample_1: SH3-C, [U-98% 13C; U-98% 15N], 1 mM

sample_2: SH3-C, [U-98% 15N], 1 mM

sample_3: SH3-C 1 mM

sample_4: SH3-C 1 mM

sample_conditions_1: ionic strength: 100 mM; pH: 2.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-15N TOCSYsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_2isotropicsample_conditions_1

Software:

CYANA, Guntert, Mumenthaler and Wuthrich - structure solution

CNS, Brunger, Adams, Clore, Gros, Nilges and Read - refinement

NMR spectrometers:

  • Varian Uniform NMR System 600 MHz
  • Varian INOVA 800 MHz

Related Database Links:

BMRB 16643
PDB