BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 15254

Title: Backbone Dynamics of Intramolecular Complex   PubMed: 17976643

Authors: Bhattacharya, Nilakshee

Citation: Bhattacharya, Nilakshee; Yi, M.; Zhou, H.; Logan, T.. "Backbone dynamics in an intramolecular prolylpeptide-SH3 complex from the diphtheria toxin repressor, DtxR"  J. Mol. Biol. 374, 977-992 (2007).

Assembly members:
PrSH3, polymer, 121 residues, Formula weight is not available

Natural source:   Common Name: Corynebacterium diphtheriae   Taxonomy ID: 1717   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Corynebacterium diphtheriae

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
PrSH3: GSHMDEVERRLVKVLKDVSR SPFGNPIPGLDELGVGNSDA AAPGTRVIDAATSMPRKVRI VQINEIFQVETDQFTQLLDA DIRVGSEVEIVDRDGHITLS HNGKDVELLDDLAHTIRIEE L

Data sets:
Data typeCount
heteronuclear NOE values99
T1 relaxation values197
T1rho relaxation values98
T2 relaxation values197

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1subunit 11

Entities:

Entity 1, subunit 1 121 residues - Formula weight is not available

1   GLYSERHISMETASPGLUVALGLUARGARG
2   LEUVALLYSVALLEULYSASPVALSERARG
3   SERPROPHEGLYASNPROILEPROGLYLEU
4   ASPGLULEUGLYVALGLYASNSERASPALA
5   ALAALAPROGLYTHRARGVALILEASPALA
6   ALATHRSERMETPROARGLYSVALARGILE
7   VALGLNILEASNGLUILEPHEGLNVALGLU
8   THRASPGLNPHETHRGLNLEULEUASPALA
9   ASPILEARGVALGLYSERGLUVALGLUILE
10   VALASPARGASPGLYHISILETHRLEUSER
11   HISASNGLYLYSASPVALGLULEULEUASP
12   ASPLEUALAHISTHRILEARGILEGLUGLU
13   LEU

Samples:

sample_1: PrSH3, [U-15N], 0.8 mM; H2O 90%; D2O 10%; K Phos 50 mM

sample_conditions_1: ionic strength: 50 mM; pH: 6.5; pressure: 1 atm; temperature: 303 K

Experiments:

NameSampleSample stateSample conditions
15N T1sample_1isotropicsample_conditions_1
15N T2sample_1isotropicsample_conditions_1
15N T1rhosample_1isotropicsample_conditions_1
Het NOEsample_1isotropicsample_conditions_1
15N T1sample_1isotropicsample_conditions_1
15N T2sample_1isotropicsample_conditions_1

Software:

NMRView, Johnson, One Moon Scientific - data analysis

NMR spectrometers:

  • Varian INOVA 600 MHz
  • Varian INOVA 720 MHz

Related Database Links:

BMRB 15255 4183
PDB
EMBL CAE49945 CCG27916 CCG27917 CCG27918 CCG27919
GB AAA23296 AAA23299 AAA23301 AAU93781 AAU93782
REF WP_003851803 WP_010935052 WP_014316797 WP_014320173
SP H2I233 P0DJL7