BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 15108

Title: NMR structure of p1 from the infectious bursal disease virus (IBDV) in dodecylphosphocholin (DPC).   PubMed: 17488723

Authors: Galloux, M.; Libersou, S.; Morellet, N.; Bouaziz, S.; Ouldali, M.; Da Costa, B.; Lepault, J.; Delmas, B.

Citation: Galloux, M.; Libersou, S.; Morellet, N.; Bouaziz, S.; Da Costa, B.; Ouldali, M.; Lepault, J.; Delmas, B.. "Infectious bursal disease virus, a non-enveloped virus, possesses a capsid-associated peptide that deforms and perforates biological membranes"  J. Biol. Chem. 282, 20774-20784 (2007).

Assembly members:
IBDV_p1_peptide, polymer, 46 residues, Formula weight is not available

Natural source:   Common Name: Gumboro virus   Taxonomy ID: 10995   Superkingdom: Viruses   Kingdom: not available   Genus/species: Avibirnavirus Gumboro virus

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
IBDV_p1_peptide: FGFKDIIRAIRRIAVPVVST LFPPAAPLAHAIGEGVDYLL GDEAQA

Data sets:
Data typeCount
1H chemical shifts318

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1p11

Entities:

Entity 1, p1 46 residues - Formula weight is not available

1   PHEGLYPHELYSASPILEILEARGALAILE
2   ARGARGILEALAVALPROVALVALSERTHR
3   LEUPHEPROPROALAALAPROLEUALAHIS
4   ALAILEGLYGLUGLYVALASPTYRLEULEU
5   GLYASPGLUALAGLNALA

Samples:

sample: pep46 1 mM; DPC 40 mM

sample_conditions_1: ionic strength: 0 mM; pH: 3.5; pressure: 1 atm; temperature: 333 K

Experiments:

NameSampleSample stateSample conditions
2D NOESYsampleisotropicsample_conditions_1
2D TOCSYsampleisotropicsample_conditions_1

Software:

xwinnmr v3.0, Bruker Biospin - collection

X-PLOR v3.851, Brunger - structure solution

NMR spectrometers:

  • Bruker AVANCE 600 MHz

Related Database Links:

BMRB 16489
PDB
DBJ BAA00391 BAA00740 BAA00741 BAA00745 BAA00954
EMBL CAA27629 CAA34234 CAA58851 CAA63416 CAA79983
GB AAA46238 AAA52086 AAB63594 AAC06016 AAC06017
REF NP_690838
SP P08364 P15480 P22351 P25219 P25220