BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 11055

Title: NMR structure of Grb2 SH2 domain complexed with the inhibitor   PubMed: 18830565

Authors: Ogura, Kenji; Shiga, Takanori; Yokochi, Masashi; Yuzawa, Satoru; Inagaki, Fuyuhiko

Citation: Ogura, Kenji; Shiga, Takanori; Yokochi, Masashi; Yuzawa, Satoru; Burke, Terrence; Inagaki, Fuyuhiko. "Solution structure of the Grb2 SH2 domain complexed with a high-affinity inhibitor."  J. Biomol. NMR 42, 197-207 (2008).

Assembly members:
growth factor receptor binding protein SH2 domain, polymer, 100 residues, Formula weight is not available

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
growth factor receptor binding protein SH2 domain: WFFGKIPRAKAEEMLSKQRH DGAFLIRESESAPGDFSLSV KFGNDVQHFKVLRDGAGKYF LWVVKFNSLNELVDYHRSTS VSRNQQIFLRDIEQVPQQPT

Data sets:
Data typeCount
13C chemical shifts273
15N chemical shifts103
1H chemical shifts694

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1growth factor receptor binding protein SH2 domain1

Entities:

Entity 1, growth factor receptor binding protein SH2 domain 100 residues - Formula weight is not available

1   TRPPHEPHEGLYLYSILEPROARGALALYS
2   ALAGLUGLUMETLEUSERLYSGLNARGHIS
3   ASPGLYALAPHELEUILEARGGLUSERGLU
4   SERALAPROGLYASPPHESERLEUSERVAL
5   LYSPHEGLYASNASPVALGLNHISPHELYS
6   VALLEUARGASPGLYALAGLYLYSTYRPHE
7   LEUTRPVALVALLYSPHEASNSERLEUASN
8   GLULEUVALASPTYRHISARGSERTHRSER
9   VALSERARGASNGLNGLNILEPHELEUARG
10   ASPILEGLUGLNVALPROGLNGLNPROTHR

Samples:

sample_1: growth factor receptor binding protein SH2 domain, [U-99% 13C; U-99% 15N], 0.5 mM; sodium phosphate 20 mM; NaCl 150 mM; NaN3 0.05%; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 0.15 M; pH: 6.3; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 1H-15N NOESYsample_1isotropicsample_conditions_1

Software:

SPARKY, Goddard - chemical shift assignment

NMR spectrometers:

  • Varian INOVA 800 MHz

Related Database Links:

PDB
DBJ BAA08645 BAA12862 BAE28376 BAE32093 BAE33439
EMBL CAA44664 CAA44665 CAB59279 CAG29359 CAG46740
GB AAA16318 AAA58448 AAB40022 AAB49699 AAC37549
REF NP_001008130 NP_001029802 NP_001084357 NP_001085669 NP_001126954
SP P62993 P62994 P87379 Q07883 Q5R4J7
TPG DAA18091