BMRB Entry 5075

Name: Solution Structure of Human Apolipoprotein(a) Kringle IV type 6
Published: 2002-02-13

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PDB ID: 1jfn
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR5075
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of Human Apolipoprotein(a) Kringle IV type 6

Deposition date:

2001-07-09

Original release date:

2002-02-13

Authors:

Maderegger, B.; Bermel, W.; Hrzenjak, A.; Kostner, G.; Sterk, H.

Citation:

Citation: Maderegger, B.; Bermel, W.; Hrzenjak, A.; Kostner, G.; Sterk, H.. "Solution Structure of Human Apolipoprotein(a) Kringle IV type 6" Biochemistry 41, 660-668 (2002).
PubMed: 11781107

Assembly members:

Assembly members:
Apolipoprotein(a) kringle IV type6, polymer, 119 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Apolipoprotein(a) kringle IV type6: ARIHHHHHHIEGRAPTEQSP GVQDCYHGDGQSYRGSFSTT VTGRTCQSWSSMTPHWHQRT TEYYPNGGLTRNYCRNPDAE ISPWCYTMDPNVRWEYCNLT QCPVTESSVLATSTAVSEQ

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
13C chemical shifts	388
15N chemical shifts	110
1H chemical shifts	612

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Apolipoprotein(a)kringle IV type 6	1

Entities:

Entity 1, Apolipoprotein(a)kringle IV type 6 119 residues - Formula weight is not available

1

ALA

ARG

ILE

HIS

ILE

2

GLU

GLY

ARG

ALA

PRO

THR

GLU

GLN

SER

PRO

3

GLY

VAL

GLN

ASP

CYS

TYR

HIS

GLY

ASP

GLY

4

GLN

SER

TYR

ARG

GLY

SER

PHE

SER

THR

5

VAL

THR

GLY

ARG

THR

CYS

GLN

SER

TRP

SER

6

SER

MET

THR

PRO

HIS

TRP

HIS

GLN

ARG

THR

7

THR

GLU

TYR

PRO

ASN

GLY

LEU

THR

8

ARG

ASN

TYR

CYS

ARG

ASN

PRO

ASP

ALA

GLU

9

ILE

SER

PRO

TRP

CYS

TYR

THR

MET

ASP

PRO

10

ASN

VAL

ARG

TRP

GLU

TYR

CYS

ASN

LEU

THR

11

GLN

CYS

PRO

VAL

THR

GLU

SER

VAL

LEU

12

ALA

THR

SER

THR

ALA

VAL

SER

GLU

GLN

Samples:

sample_1: Apolipoprotein(a) kringle IV type6, [U-15N], 0.7 mM; phosphate buffer 15 mM; NaCl 50 mM; H2O 90%; D2O 10%

sample_2: Apolipoprotein(a) kringle IV type6, [U-15N; U-13C], 0.7 mM; phosphate buffer 15 mM; NaCl 50 mM; H2O 90%; D2O 10%

sample_cond_1: ionic strength: 65 mM; pH: 6.5; pressure: 1 atm; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	not available	not available	not available
3D 13C-separated NOESY	not available	not available	not available
HNHA	not available	not available	not available

Software:

NMRPipe v1.6 - processing

ANSIG v3.3 - data analysis

XWINNMR v2.6 - collection

X-PLOR v3.0 - refinement, structure solution

NMR spectrometers:

Varian INOVA 600 MHz

PDB	1JFN
GenBank	AAF03677