BMRB Entry 34255

Title:
Structure of the UB2H domain of E.coli PBP1B in complex with LpoB
Deposition date:
2018-03-29
Original release date:
2019-03-14
Authors:
Simorre, J.; Maya Martinez, R.; Bougault, C.
Citation:

Citation: Egan, A.; Maya-Martinez, R.; Ayala, I.; Bougault, C.; Banzhaf, M.; Breukink, E.; Vollmer, W.; Simorre, J.. "Induced conformational changes activate the peptidoglycan synthase PBP1B."  Mol. Microbiol. 110, 335-356 (2018).
PubMed: 30044025

Assembly members:

Assembly members:
entity_1, polymer, 114 residues, 13183.969 Da.

Natural source:

Natural source:   Common Name: E. coli   Taxonomy ID: 83333   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Escherichia coli

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli BL21(DE3)   Vector: pET28a

Data sets:
Data typeCount
13C chemical shifts363
15N chemical shifts72
1H chemical shifts499

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1entity_11

Entities:

Entity 1, entity_1 114 residues - 13183.969 Da.

1   METGLYSERSERHISHISHISHISHISHIS
2   SERSERGLYLEUVALPROARGGLYSERHIS
3   METGLYARGMETVALASNLEUGLUPROASP
4   METTHRILESERLYSASNGLUMETVALLYS
5   LEULEUGLUALATHRGLNTYRARGGLNVAL
6   SERLYSMETTHRARGPROGLYGLUPHETHR
7   VALGLNALAASNSERILEGLUMETILEARG
8   ARGPROPHEASPPHEPROASPSERLYSGLU
9   GLYGLNVALARGALAARGLEUTHRPHEASP
10   GLYASPHISLEUALATHRILEVALASNMET
11   GLUASNASNARGGLNPHEGLYPHEPHEARG
12   LEUASPPROARG

Samples:

sample_1: UB2H domain, [U-13C; U-15N], 400 ± 5 uM; LpoB 480 ± 5 uM; Tris.HCl 10 mM; NaCl 200 mM

sample_2: LpoB 540 uM; UB2H, [U-15N], 450 ± 5 uM; Tris.HCl 10 mM; NaCl 200 mM

sample_conditions_1: ionic strength: 210 mM; pH: 7.5; pressure: 1 atm; temperature: 293 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HN(CA)COsample_1isotropicsample_conditions_1
3D BESTROSY-HNCACBsample_1isotropicsample_conditions_1
3D BESTROSY-HN(CO)CACBsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aliphaticsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aromaticsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aliphaticsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aromaticsample_1isotropicsample_conditions_1

Software:

Aria v2.3, Rieping W., Habeck M., Bardiaux B., Bernard A , Nilges M. - structure calculation

CNS v1.2, Brunger, Adams, Clore, Gros, Nilges and Read - refinement

CcpNmr_Analysis v2.4, CCPN - chemical shift assignment

Talos+, Yang Shen, Frank Delaglio, Gabriel Cornilescu, and Ad Bax - data analysis

Unio10 v2.0.2, Torsten Herrmann - structure calculation

nmrDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - data analysis

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMR spectrometers:

  • Bruker Avance 700 MHz
  • Bruker US2 950 MHz
  • Bruker AvanceIII 850 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks