BMRB Entry 11512

Title:
Backbone 13C Chemical Shift Assignments for Ubiquitin in Lyophilized Powder
Deposition date:
2012-10-03
Original release date:
2019-08-30
Authors:
Fujiwara, Toshimichi; Ikeda, Keisuke; Egawa, Ayako
Citation:

Citation: Ikeda, Keisuke; Egawa, Ayako; Fujiwara, Toshimichi. "Secondary structural analysis of proteins based on (13)C chemical shift assignments in unresolved solid-state NMR spectra enhanced by fragmented structure database"  J. Biomol. NMR 55, 189-200 (2013).
PubMed: 23271376

Assembly members:

Assembly members:
ubiquitin, polymer, 76 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: obtained from a vendor

Entity Sequences (FASTA):

Data sets:
Data typeCount
13C chemical shifts222

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1ubiquitin1

Entities:

Entity 1, ubiquitin 76 residues - Formula weight is not available

1   METGLNILEPHEVALLYSTHRLEUTHRGLY
2   LYSTHRILETHRLEUGLUVALGLUPROSER
3   ASPTHRILEGLUASNVALLYSALALYSILE
4   GLNASPLYSGLUGLYILEPROPROASPGLN
5   GLNARGLEUILEPHEALAGLYLYSGLNLEU
6   GLUASPGLYARGTHRLEUSERASPTYRASN
7   ILEGLNLYSGLUSERTHRLEUHISLEUVAL
8   LEUARGLEUARGGLYGLY

Samples:

sample_1: ubiquitin, [U-100% 13C; U-100% 15N], 7 mg

sample_conditions_1: pressure: 1 atm; temperature: 213 K

Experiments:

NameSampleSample stateSample conditions
2D 13C-13C DARRsample_1solidsample_conditions_1
2D 13C-13C DQSQsample_1solidsample_conditions_1
2D (CA)i-(COCA)i-1sample_1solidsample_conditions_1

Software:

FELIX, Accelrys Software Inc. - processing

NMR spectrometers:

  • Varian infinity-plus 700 MHz
  • Varian infinity-plus 600 MHz