BMRB Entry 11189

Title:
Solution structure of the second PDZ domain of human InaD-like protein
Deposition date:
2010-07-21
Original release date:
2011-07-20
Authors:
Inoue, K.; Kurosaki, C.; Izumi, K.; Yoshida, M.; Hayashi, F.; Yokoyama, S.
Citation:

Citation: Inoue, K.; Kurosaki, C.; Izumi, K.; Yoshida, M.; Hayashi, F.; Yokoyama, S.. "Solution structure of the second PDZ domain of human InaD-like protein"  .

Assembly members:

Assembly members:
PDZ domain, polymer, 111 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: cell free synthesis   Host organism: E. coli - cell free   Vector: P050627-16

Data sets:
Data typeCount
13C chemical shifts416
15N chemical shifts106
1H chemical shifts673

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1PDZ domain1

Entities:

Entity 1, PDZ domain 111 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYPROGLUTHR
2   VALCYSTRPGLYHISVALGLUGLUVALGLU
3   LEUILEASNASPGLYSERGLYLEUGLYPHE
4   GLYILEVALGLYGLYLYSTHRSERGLYVAL
5   VALVALARGTHRILEVALPROGLYGLYLEU
6   ALAASPARGASPGLYARGLEUGLNTHRGLY
7   ASPHISILELEULYSILEGLYGLYTHRASN
8   VALGLNGLYMETTHRSERGLUGLNVALALA
9   GLNVALLEUARGASNCYSGLYASNSERVAL
10   ARGMETLEUVALALAARGASPPROALAGLY
11   ASPILESERVALTHRSERGLYPROSERSER
12   GLY

Samples:

sample_1: PDZ domain, [U-13C; U-15N], 1.11 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYsample_1isotropiccondition_1
3D 13C-separated NOESYsample_1isotropiccondition_1

Software:

Delta NMR v4.3.2, JEOL - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.93191, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • JEOL ECA 800 MHz

Related Database Links:

PDB

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks