BMRB Entry 7310

Name: Automated structure based backbone and sidechain assignment of mitochondrial Cyclophilin D
Published: 2006-11-06

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7310

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Automated structure based backbone and sidechain assignment of mitochondrial Cyclophilin D

Deposition date:

2006-09-30

Original release date:

2006-11-06

Authors:

Schedlbauer, Andreas; Hoffmann, Bernd; Kontaxis, Georg; Ruedisser, Simon; Hommel, Ulrich; Konrat, Robert

Citation:

Citation: Schedlbauer, Andreas; Hoffmann, Bernd; Kontaxis, Georg; Ruedisser, Simon; Hommel, Ulrich; Konrat, Robert. "Automated backbone and side-chain assignment of mitochondrial matrix cyclophilin D." J. Biomol. NMR 38, 267-267 (2007).
PubMed: 17530183

Assembly members:

Assembly members:
cyclophilin D, polymer, 165 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
cyclophilin D: MQNPLVYLDVGADGQPLGRV VLELKADVVPKTAENFRALC TGEKGFGYKGSTFHRVIPAF MCQAGDFTNHNGTGGKSIYG SRFPDENFTLKHVGPGVLSM ANAGPNTNGSQFFICTIKTD WLDGKHVVFGHVKEGMDVVK KIESFGSKSGKTSKKIVITD CGQLS

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	461
15N chemical shifts	160
1H chemical shifts	1013

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	cyclophilin D	1

Entities:

Entity 1, cyclophilin D 165 residues - Formula weight is not available

1

MET

GLN

ASN

PRO

LEU

VAL

TYR

LEU

ASP

VAL

2

GLY

ALA

ASP

GLY

GLN

PRO

LEU

GLY

ARG

VAL

3

VAL

LEU

GLU

LEU

LYS

ALA

ASP

VAL

PRO

4

LYS

THR

ALA

GLU

ASN

PHE

ARG

ALA

LEU

CYS

5

THR

GLY

GLU

LYS

GLY

PHE

GLY

TYR

LYS

GLY

6

SER

THR

PHE

HIS

ARG

VAL

ILE

PRO

ALA

PHE

7

MET

CYS

GLN

ALA

GLY

ASP

PHE

THR

ASN

HIS

8

ASN

GLY

THR

GLY

LYS

SER

ILE

TYR

GLY

9

SER

ARG

PHE

PRO

ASP

GLU

ASN

PHE

THR

LEU

10

LYS

HIS

VAL

GLY

PRO

GLY

VAL

LEU

SER

MET

11

ALA

ASN

ALA

GLY

PRO

ASN

THR

ASN

GLY

SER

12

GLN

PHE

ILE

CYS

THR

ILE

LYS

THR

ASP

13

TRP

LEU

ASP

GLY

LYS

HIS

VAL

PHE

GLY

14

HIS

VAL

LYS

GLU

GLY

MET

ASP

VAL

LYS

15

LYS

ILE

GLU

SER

PHE

GLY

SER

LYS

SER

GLY

16

LYS

THR

SER

LYS

ILE

VAL

ILE

THR

ASP

17

CYS

GLY

GLN

LEU

SER

Samples:

sample_1: cyclophilin D, [U-13C; U-15N], 800 uM; Na2HPO4 50 mM; D2O 10%

conditions_1: pH: 7.0; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H15N HSQC	sample_1	not available	conditions_1
3D HNCA	sample_1	not available	conditions_1
3D HNCACB	sample_1	not available	conditions_1
3D CBCACONH	sample_1	not available	conditions_1
3D 15N13C NOESY-HSQC	sample_1	not available	conditions_1

Software:

No software information available

NMR spectrometers:

Varian INOVA 500 MHz
Varian INOVA 800 MHz

BMRB	25340 6141
PDB	4TOT
DBJ	BAI47316
GB	AAA58434 AAB08453 AAF71354 AAH04041 AAH05020
REF	NP_001001597 NP_001253053 NP_005720 NP_598845 NP_758443
SP	P29117 P30404 P30405 Q99KR7
TPG	DAA14226
AlphaFold	P30405 P29117 P30404 Q99KR7