BMRB Entry 7020

Title:
Chemical Shift Assignments for a Subunit of RNA Polymerase II
Deposition date:
2006-03-15
Original release date:
2006-09-22
Authors:
Kang, Xue; Xia, Bin; Jin, Changwen
Citation:

Citation: Kang, Xue; Hu, Y.; Li, Y.; Guo, X.; Jiang, X.; Lai, L.; Xia, Bin; Jin, Changwen. "Structural, biochemical, and dynamic characterizations of the hRPB8 subunit of human RNA polymerases"  J. Biol. Chem. 281, 18216-18226 (2006).
PubMed: 16632472

Assembly members:

Assembly members:
hRPB8, polymer, 150 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology

Data sets:
Data typeCount
13C chemical shifts514
15N chemical shifts132
1H chemical shifts761

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1RNA Polymerase II subunit1

Entities:

Entity 1, RNA Polymerase II subunit 150 residues - Formula weight is not available

1   METALAGLYILELEUPHEGLUASPILEPHE
2   ASPVALLYSASPILEASPPROGLUGLYLYS
3   LYSPHEASPARGVALSERARGLEUHISCYS
4   GLUSERGLUSERPHELYSMETASPLEUILE
5   LEUASPVALASNILEGLNILETYRPROVAL
6   ASPLEUGLYASPLYSPHEARGLEUVALILE
7   ALASERTHRLEUTYRGLUASPGLYTHRLEU
8   ASPASPGLYGLUTYRASNPROTHRASPASP
9   ARGPROSERARGALAASPGLNPHEGLUTYR
10   VALMETTYRGLYLYSVALTYRARGILEGLU
11   GLYASPGLUTHRSERTHRGLUALAALATHR
12   ARGLEUSERALATYRVALSERTYRGLYGLY
13   LEULEUMETARGLEUGLNGLYASPALAASN
14   ASNLEUHISGLYPHEGLUVALASPSERARG
15   VALTYRLEULEUMETLYSLYSLEUALAPHE

Samples:

sample_1: hRPB8, [U-13C; U-15N], 1 mM; sodium phosphate 20 mM; dithiothreitol 10 mM; H2O 95%; D2O 5%

conditions_1: pH: 6.3; pressure: 1 atm; temperature: 303 K

Experiments:

NameSampleSample stateSample conditions
1H15N HSQCsample_1not availableconditions_1
1H15N13C CBCACONHsample_1not availableconditions_1
1H15N13C HNCACBsample_1not availableconditions_1

Software:

NMRPipe - processing

NMR spectrometers:

  • Bruker Avance 500 MHz

Related Database Links:

PDB
DBJ BAE27163 BAE36495 BAE88588 BAG73557
EMBL CAA89060 CAB92189 CAG03481
GB AAA91458 AAD19908 AAH00739 AAH02306 AAH72811
REF NP_001016113 NP_001017600 NP_001085470 NP_001128261 NP_001178994
SP P52434 Q923G2
TPG DAA33314
AlphaFold P52434 Q923G2

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks