BMRB Entry 6141

Title:
Backbone 1H, 13C, and 15N Chemical Shift Assignments for Cyclophilin D
Deposition date:
2004-03-02
Original release date:
2007-08-28
Authors:
Hoffmann, Bernd; Kontaxis, Georg; Ruedisser, Simon; Hommel, Ulrich; Konrat, Robert
Citation:

Citation: Schedlbauer, A.; Hoffmann, Bernd; Kontaxis, Georg; Ruedisser, Simon; Hommel, Ulrich; Konrat, Robert. "Automated backbone and side-chain assignment of mitochondrial matrix cyclophilin D."  J. Biomol. NMR 38, 267-267 (2007).
PubMed: 17530183

Assembly members:

Assembly members:
Cyclophilin D, polymer, 165 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: rat   Taxonomy ID: 10116   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Rattus norvegicus

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Data sets:
Data typeCount
1H chemical shifts151
13C chemical shifts394
15N chemical shifts152

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Cyclophilin D1

Entities:

Entity 1, Cyclophilin D 165 residues - Formula weight is not available

1   METGLNASNPROLEUVALTYRLEUASPVAL
2   GLYALAASPGLYGLNPROLEUGLYARGVAL
3   VALLEUGLULEULYSALAASPVALVALPRO
4   LYSTHRALAGLUASNPHEARGALALEUCYS
5   THRGLYGLULYSGLYPHEGLYTYRLYSGLY
6   SERTHRPHEHISARGVALILEPROALAPHE
7   METCYSGLNALAGLYASPPHETHRASNHIS
8   ASNGLYTHRGLYGLYLYSSERILETYRGLY
9   SERARGPHEPROASPGLUASNPHETHRLEU
10   LYSHISVALGLYPROGLYVALLEUSERMET
11   ALAASNALAGLYPROASNTHRASNGLYSER
12   GLNPHEPHEILECYSTHRILELYSTHRASP
13   TRPLEUASPGLYLYSHISVALVALPHEGLY
14   HISVALLYSGLUGLYMETASPVALVALLYS
15   LYSILEGLUSERPHEGLYSERLYSSERGLY
16   LYSTHRSERLYSLYSILEVALILETHRASP
17   CYSGLYGLNLEUSER

Samples:

sample: Cyclophilin D, [U-13C; U-15N], 1 mM; sodium phosphate 50 mM

Conditions_1: pH: . .; temperature: . .

Experiments:

NameSampleSample stateSample conditions
not availablesamplenot availableConditions_1

Software:

nmrDraw v2.2 - spectrum transformation

nmrview v5.0.4 - signal assignment

NMR spectrometers:

  • VARIAN INOVA 800 MHz

Related Database Links:

BMRB 25340 7310
PDB
DBJ BAI47316
GB AAA58434 AAB08453 AAF71354 AAH04041 AAH05020
REF NP_001001597 NP_001253053 NP_005720 NP_598845 NP_758443
SP P29117 P30404 P30405 Q99KR7
TPG DAA14226
AlphaFold P29117 P30404 P30405 Q99KR7

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks