BMRB Entry 50028

Name: HIV-1 gp41 Membrane Proximal External Region-Transmembrane Domain (MPER-TMD) Peptide in LMPG micelle
Published: 2020-09-21

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR50028

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

HIV-1 gp41 Membrane Proximal External Region-Transmembrane Domain (MPER-TMD) Peptide in LMPG micelle

Deposition date:

2019-10-03

Original release date:

2020-09-21

Authors:

Sun, Zhen-Yu; Kim, Mikyung; Wagner, Gerhard; Reinherz, Ellis

Citation:

Citation: Wang, Yi; Kaur, Pavanjeet; Sun, Zhen-Yu; Elbahnasawy, Mostafa; Hayati, Zahra; Qiao, Zhi-Song; Bui, Nhat; Chile, Camila; Nasr, Mahmoud; Wanger, Gerhard; Wang, Jia-Huai; Song, Likai; Reinherz, Ellis; Kim, Mikyung. "Topological analysis of the gp41 MPER on lipid bilayers relevant to the metastable HIV-1 envelope prefusion state" Proc. Natl. Acad. Sci. U.S.A. 116, 22556-22566 (2019).
PubMed: 31624123

Assembly members:

Assembly members:
entity_1, polymer, 44 residues, Formula weight is not available

Natural source:

Natural source: Common Name: HIV-1 Taxonomy ID: 11676 Superkingdom: Viruses Kingdom: not available Genus/species: Lentivirus HIV-1

Experimental source:

Experimental source: Production method: recombinant technology Host organism: E. coli Vector: pET30a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: ELDKWASLWNWFNITNWLWY IKIFIIIVGGLVGLRIVFAV LSIV

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	181
15N chemical shifts	49
1H chemical shifts	333

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	MPER-TMD	1

Entities:

Entity 1, MPER-TMD 44 residues - Formula weight is not available

662-705

1

GLU

LEU

ASP

LYS

TRP

ALA

SER

LEU

TRP

ASN

2

TRP

PHE

ASN

ILE

THR

ASN

TRP

LEU

TRP

TYR

3

ILE

LYS

ILE

PHE

ILE

VAL

GLY

4

LEU

VAL

GLY

LEU

ARG

ILE

VAL

PHE

ALA

VAL

5

LEU

SER

ILE

VAL

Samples:

sample_1: mpertm, [U-15N; U-13C], 0.9 mM; LMPG 100 mM

sample_conditions_1: ionic strength: 0.1 M; pH: 6.6; pressure: 1 atm; temperature: 308 K

Experiments:

Name	Sample	Sample state	Sample conditions
15N-HSQC	sample_1	isotropic	sample_conditions_1
HNCA	sample_1	isotropic	sample_conditions_1
HN(CO)CA	sample_1	isotropic	sample_conditions_1
HNCO	sample_1	isotropic	sample_conditions_1
HN(CA)CO	sample_1	isotropic	sample_conditions_1
HNCB	sample_1	isotropic	sample_conditions_1
HN(CO)CB	sample_1	isotropic	sample_conditions_1
C(CO)NH	sample_1	isotropic	sample_conditions_1
H(CCO)NH	sample_1	isotropic	sample_conditions_1
13C-HSQC	sample_1	isotropic	sample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

CARA, Keller and Wuthrich - Analysis

NMR spectrometers:

Bruker Avance III 750 MHz MHz
Agilent dd2 600 MHz MHz