BMRB Entry 28051

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR28051

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Title:
ILVM methyl assignments for Pyrococcus furiosus Rad50 NBD (L828A and D829A mutants) with unlabeled Mre11
Deposition date:
2019-11-27
Original release date:
2020-02-26
Authors:
Boswell, Zachary; Canny, Marella; Buschmann, Tanner; Sang, Julie; Latham, Michael
Citation:

Citation: Boswell, Zachary; Canny, Marella; Buschmann, Tanner; Sang, Julie; Latham, Michael. "Adjacent mutations in the archaeal Rad50 ABC ATPase D-loop disrupt allosteric regulation of ATP hydrolysis through different mechanisms"  Nucleic Acids Res. 48, 2457-2472 (2020).
PubMed: 31889185

Assembly members:

Assembly members:
Pf_Rad50_NBD_A, polymer, 199 residues, Formula weight is not available
Pf_Rad50_NBD_B, polymer, 174 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: E. coli   Taxonomy ID: 562   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Escherichia coli

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pRSET

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Pf_Rad50_NBD_A: AMGSMKLERVTVKNFRSHSD TVVEFKEGINLIIGQNGSGK SSLLDAILVGLYWPLRIKDI KKDEFTKVGARDTYIDLIFE KDGTKYRITRRFLKGYSSGE IHAMKRLVGNEWKHVTEPSS KAISAFMEKLIPYNIFLNAI YIRQGQIDAILESDEAREKV VREVLNLDKFETAYKKLSEL KKTINNRIKEYRDILARTE
Pf_Rad50_NBD_B: RERVKKEIKDLEKAKDFTEE LIEKVKKYKALAREAALSKI GELASEIFAEFTEGKYSEVV VRAEENKVRLFVVWEGKERP LTFLSGGERIALGLAFRLAM SLYLAGEISLLILDEPTPYA DEERRRKLITIMERYLKKIP QVILVSHDEELKDAADHVIR ISLENGSSKVEVVS

Data sets:
Data typeCount
13C chemical shifts138
1H chemical shifts411

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Rad50NBD, subunit A1
2Rad50NBD, subunit B2

Entities:

Entity 1, Rad50NBD, subunit A 199 residues - Formula weight is not available

1   ALAMETGLYSERMETLYSLEUGLUARGVAL
2   THRVALLYSASNPHEARGSERHISSERASP
3   THRVALVALGLUPHELYSGLUGLYILEASN
4   LEUILEILEGLYGLNASNGLYSERGLYLYS
5   SERSERLEULEUASPALAILELEUVALGLY
6   LEUTYRTRPPROLEUARGILELYSASPILE
7   LYSLYSASPGLUPHETHRLYSVALGLYALA
8   ARGASPTHRTYRILEASPLEUILEPHEGLU
9   LYSASPGLYTHRLYSTYRARGILETHRARG
10   ARGPHELEULYSGLYTYRSERSERGLYGLU
11   ILEHISALAMETLYSARGLEUVALGLYASN
12   GLUTRPLYSHISVALTHRGLUPROSERSER
13   LYSALAILESERALAPHEMETGLULYSLEU
14   ILEPROTYRASNILEPHELEUASNALAILE
15   TYRILEARGGLNGLYGLNILEASPALAILE
16   LEUGLUSERASPGLUALAARGGLULYSVAL
17   VALARGGLUVALLEUASNLEUASPLYSPHE
18   GLUTHRALATYRLYSLYSLEUSERGLULEU
19   LYSLYSTHRILEASNASNARGILELYSGLU
20   TYRARGASPILELEUALAARGTHRGLU

Entity 2, Rad50NBD, subunit B 174 residues - Formula weight is not available

1   ARGGLUARGVALLYSLYSGLUILELYSASP
2   LEUGLULYSALALYSASPPHETHRGLUGLU
3   LEUILEGLULYSVALLYSLYSTYRLYSALA
4   LEUALAARGGLUALAALALEUSERLYSILE
5   GLYGLULEUALASERGLUILEPHEALAGLU
6   PHETHRGLUGLYLYSTYRSERGLUVALVAL
7   VALARGALAGLUGLUASNLYSVALARGLEU
8   PHEVALVALTRPGLUGLYLYSGLUARGPRO
9   LEUTHRPHELEUSERGLYGLYGLUARGILE
10   ALALEUGLYLEUALAPHEARGLEUALAMET
11   SERLEUTYRLEUALAGLYGLUILESERLEU
12   LEUILELEUASPGLUPROTHRPROTYRALA
13   ASPGLUGLUARGARGARGLYSLEUILETHR
14   ILEMETGLUARGTYRLEULYSLYSILEPRO
15   GLNVALILELEUVALSERHISASPGLUGLU
16   LEULYSASPALAALAASPHISVALILEARG
17   ILESERLEUGLUASNGLYSERSERLYSVAL
18   GLUVALVALSER

Samples:

sample_1: Rad50NBD, subunit A, [U-2H; 13CH3 ILVM], 0.5 mM; Rad50NBD, subunit B, [U-2H; 13CH3 ILVM], 0.5 mM

sample_conditions_1: ionic strength: 200 mM; pH: 7; pressure: 1 atm; temperature: 273 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-13C HMQCsample_1isotropicsample_conditions_1

Software:

NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - data analysis

NMR spectrometers:

  • Agilent DD2 600 MHz