BMRB Entry 27043

Title:
NMR resonance assignment of New Delhi Metallo-beta-lactamase
Deposition date:
2017-03-05
Original release date:
2017-03-17
Authors:
Xu, Guohua
Citation:

Citation: Yao, Chendie; Wu, Qiong; Xu, Guohua; Li, Conggang. "NMR resonance assignment of New Delhi Metallo-beta-lactamase"  Biomol. NMR Assignments 11, 239-242 (2017).
PubMed: 28808891

Assembly members:

Assembly members:
NDM-1, polymer, 278 residues, Formula weight is not available
entity_ZN, non-polymer, 65.409 Da.

Natural source:

Natural source:   Common Name: Superbacteria   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET-21a

Data sets:
Data typeCount
13C chemical shifts383
15N chemical shifts182
1H chemical shifts182

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1NDM-11
2Zn2+2

Entities:

Entity 1, NDM-1 278 residues - Formula weight is not available

1   METGLULEUPROASNILEMETHISPROVAL
2   ALALYSLEUSERTHRALALEUALAALAALA
3   LEUMETLEUSERGLYCYSMETPROGLYGLU
4   ILEARGPROTHRILEGLYGLNGLNMETGLU
5   THRGLYASPGLNARGPHEGLYASPLEUVAL
6   PHEARGGLNLEUALAPROASNVALTRPGLN
7   HISTHRSERTYRLEUASPMETPROGLYPHE
8   GLYALAVALALASERASNGLYLEUILEVAL
9   ARGASPGLYGLYARGVALLEUVALVALASP
10   THRALATRPTHRASPASPGLNTHRALAGLN
11   ILELEUASNTRPILELYSGLNGLUILEASN
12   LEUPROVALALALEUALAVALVALTHRHIS
13   ALAHISGLNASPLYSMETGLYGLYMETASP
14   ALALEUHISALAALAGLYILEALATHRTYR
15   ALAASNALALEUSERASNGLNLEUALAPRO
16   GLNGLUGLYMETVALALAALAGLNHISSER
17   LEUTHRPHEALAALAASNGLYTRPVALGLU
18   PROALATHRALAPROASNPHEGLYPROLEU
19   LYSVALPHETYRPROGLYPROGLYHISTHR
20   SERASPASNILETHRVALGLYILEASPGLY
21   THRASPILEALAPHEGLYGLYCYSLEUILE
22   LYSASPSERLYSALALYSSERLEUGLYASN
23   LEUGLYASPALAASPTHRGLUHISTYRALA
24   ALASERALAARGALAPHEGLYALAALAPHE
25   PROLYSALASERMETILEVALMETSERHIS
26   SERALAPROASPSERARGALAALAILETHR
27   HISTHRALAARGMETALAASPLYSLEUARG
28   LEUGLUHISHISHISHISHISHIS

Entity 2, Zn2+ - Zn - 65.409 Da.

1   ZN

Samples:

sample_1: NDM-1, [U-13C; U-15N], 0.3 mM; HEPES 50 mM

sample_conditions_1: ionic strength: 0 M; pH: 7.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N TROSY-HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1
3D TROSY-HNCAsample_1isotropicsample_conditions_1
3D TROSY-HNCACBsample_1isotropicsample_conditions_1
3D TROSY-HN(CO)CAsample_1isotropicsample_conditions_1
3D TROSY-HN(CO)CACBsample_1isotropicsample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

SPARKY, Goddard - data analysis

NMR spectrometers:

  • Bruker Avance 850 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks