BMRB Entry 26834

Name: N-terminal domain of chicken (gallus gallus) PARP-3
Published: 2016-08-31

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR26834

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

N-terminal domain of chicken (gallus gallus) PARP-3

Deposition date:

2016-06-23

Original release date:

2016-08-31

Authors:

Polo, Luis; Xu, Yingqi; Matthews, Stephen; Pearl, Laurence

Citation:

Citation: Grundy, Gabrielle; Polo, Luis; Zeng, Zhihong; Rulten, Stuart; Hoch, Nicolas; Paomephan, Pathompong; Xu, Yingqi; Sweet, Steve; Thorne, Alan; Oliver, Antony; Matthews, Stephen; Pearl, Laurence; Caldecott, Keith. "PARP3 is a sensor of nicked nucleosomes and monoribosylates histone H2B(Glu2)" Nat. commun. 7, 12404-12404 (2016).
PubMed: 27530147

Assembly members:

Assembly members:
PARP3_NTD, polymer, 200 residues, Formula weight is not available

Natural source:

Natural source: Common Name: chicken Taxonomy ID: 9031 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Gallus gallus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pNIC28-BSA1

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PARP3_NTD: MHHHHHHSSGVDLGTWSHPQ FEKENLYFQSMAPKRRAPPA SQPADGGKKAKGGQEEEEDA WSSALNALKTAPREKPPATI DGQCPLSAGPDAKVYEDYDC TLNQTNISANNNKFYIIQLI EHGGTYSTWNRWGRVGEVGQ SKLLPFTSLEAAKKDFEKKF WEKTKNRWAARDNFVAQPGK YTLIEVQPGAGQEVALRVDG

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	556
15N chemical shifts	141
1H chemical shifts	142

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PARP3 NTD	1

Entities:

Entity 1, PARP3 NTD 200 residues - Formula weight is not available

1	MET	HIS	HIS	HIS	HIS	HIS	HIS	SER	SER	GLY
2	VAL	ASP	LEU	GLY	THR	TRP	SER	HIS	PRO	GLN
3	PHE	GLU	LYS	GLU	ASN	LEU	TYR	PHE	GLN	SER
4	MET	ALA	PRO	LYS	ARG	ARG	ALA	PRO	PRO	ALA
5	SER	GLN	PRO	ALA	ASP	GLY	GLY	LYS	LYS	ALA
6	LYS	GLY	GLY	GLN	GLU	GLU	GLU	GLU	ASP	ALA
7	TRP	SER	SER	ALA	LEU	ASN	ALA	LEU	LYS	THR
8	ALA	PRO	ARG	GLU	LYS	PRO	PRO	ALA	THR	ILE
9	ASP	GLY	GLN	CYS	PRO	LEU	SER	ALA	GLY	PRO
10	ASP	ALA	LYS	VAL	TYR	GLU	ASP	TYR	ASP	CYS
11	THR	LEU	ASN	GLN	THR	ASN	ILE	SER	ALA	ASN
12	ASN	ASN	LYS	PHE	TYR	ILE	ILE	GLN	LEU	ILE
13	GLU	HIS	GLY	GLY	THR	TYR	SER	THR	TRP	ASN
14	ARG	TRP	GLY	ARG	VAL	GLY	GLU	VAL	GLY	GLN
15	SER	LYS	LEU	LEU	PRO	PHE	THR	SER	LEU	GLU
16	ALA	ALA	LYS	LYS	ASP	PHE	GLU	LYS	LYS	PHE
17	TRP	GLU	LYS	THR	LYS	ASN	ARG	TRP	ALA	ALA
18	ARG	ASP	ASN	PHE	VAL	ALA	GLN	PRO	GLY	LYS
19	TYR	THR	LEU	ILE	GLU	VAL	GLN	PRO	GLY	ALA
20	GLY	GLN	GLU	VAL	ALA	LEU	ARG	VAL	ASP	GLY

Samples:

sample_1: PARP3 NTD, [U-100% 13C; U-100% 15N], 0.3 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 0.1 M; pH: 7.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1

Software:

CCPN v2.4.1, CCPN - chemical shift assignment

NMR spectrometers:

Bruker Ascend 600 MHz

UNP	E1BSI0
AlphaFold	E1BSI0

1	MET	HIS	HIS	HIS	HIS	HIS	HIS	SER	SER	GLY
2	VAL	ASP	LEU	GLY	THR	TRP	SER	HIS	PRO	GLN
3	PHE	GLU	LYS	GLU	ASN	LEU	TYR	PHE	GLN	SER
4	MET	ALA	PRO	LYS	ARG	ARG	ALA	PRO	PRO	ALA
5	SER	GLN	PRO	ALA	ASP	GLY	GLY	LYS	LYS	ALA
6	LYS	GLY	GLY	GLN	GLU	GLU	GLU	GLU	ASP	ALA
7	TRP	SER	SER	ALA	LEU	ASN	ALA	LEU	LYS	THR
8	ALA	PRO	ARG	GLU	LYS	PRO	PRO	ALA	THR	ILE
9	ASP	GLY	GLN	CYS	PRO	LEU	SER	ALA	GLY	PRO
10	ASP	ALA	LYS	VAL	TYR	GLU	ASP	TYR	ASP	CYS
11	THR	LEU	ASN	GLN	THR	ASN	ILE	SER	ALA	ASN
12	ASN	ASN	LYS	PHE	TYR	ILE	ILE	GLN	LEU	ILE
13	GLU	HIS	GLY	GLY	THR	TYR	SER	THR	TRP	ASN
14	ARG	TRP	GLY	ARG	VAL	GLY	GLU	VAL	GLY	GLN
15	SER	LYS	LEU	LEU	PRO	PHE	THR	SER	LEU	GLU
16	ALA	ALA	LYS	LYS	ASP	PHE	GLU	LYS	LYS	PHE
17	TRP	GLU	LYS	THR	LYS	ASN	ARG	TRP	ALA	ALA
18	ARG	ASP	ASN	PHE	VAL	ALA	GLN	PRO	GLY	LYS
19	TYR	THR	LEU	ILE	GLU	VAL	GLN	PRO	GLY	ALA
20	GLY	GLN	GLU	VAL	ALA	LEU	ARG	VAL	ASP	GLY

1	MET	HIS	HIS	HIS	HIS	HIS	HIS	SER	SER	GLY
2	VAL	ASP	LEU	GLY	THR	TRP	SER	HIS	PRO	GLN
3	PHE	GLU	LYS	GLU	ASN	LEU	TYR	PHE	GLN	SER
4	MET	ALA	PRO	LYS	ARG	ARG	ALA	PRO	PRO	ALA
5	SER	GLN	PRO	ALA	ASP	GLY	GLY	LYS	LYS	ALA
6	LYS	GLY	GLY	GLN	GLU	GLU	GLU	GLU	ASP	ALA
7	TRP	SER	SER	ALA	LEU	ASN	ALA	LEU	LYS	THR
8	ALA	PRO	ARG	GLU	LYS	PRO	PRO	ALA	THR	ILE
9	ASP	GLY	GLN	CYS	PRO	LEU	SER	ALA	GLY	PRO
10	ASP	ALA	LYS	VAL	TYR	GLU	ASP	TYR	ASP	CYS
11	THR	LEU	ASN	GLN	THR	ASN	ILE	SER	ALA	ASN
12	ASN	ASN	LYS	PHE	TYR	ILE	ILE	GLN	LEU	ILE
13	GLU	HIS	GLY	GLY	THR	TYR	SER	THR	TRP	ASN
14	ARG	TRP	GLY	ARG	VAL	GLY	GLU	VAL	GLY	GLN
15	SER	LYS	LEU	LEU	PRO	PHE	THR	SER	LEU	GLU
16	ALA	ALA	LYS	LYS	ASP	PHE	GLU	LYS	LYS	PHE
17	TRP	GLU	LYS	THR	LYS	ASN	ARG	TRP	ALA	ALA
18	ARG	ASP	ASN	PHE	VAL	ALA	GLN	PRO	GLY	LYS
19	TYR	THR	LEU	ILE	GLU	VAL	GLN	PRO	GLY	ALA
20	GLY	GLN	GLU	VAL	ALA	LEU	ARG	VAL	ASP	GLY