BMRB Entry 18644

Title:
NMR solution structure of PawS Derived Peptide 5 (PDP-5)
Deposition date:
2012-08-06
Original release date:
2013-08-15
Authors:
Elliott, Alysha; Mylne, Joshua; Rosengren, Johan
Citation:

Citation: Elliott, Alysha; Delay, Christina; Liu, Huanle; Phua, Zaiyang; Rosengren, K. Johan; Benfield, Aurelie; Panero, Jose; Colgrave, Michelle; Jayasena, Achala; Dunse, Kerry; Anderson, Marilyn; Schilling, Edward; Ortiz-Barrientos, Daniel; Craik, David; Mylne, Joshua. "Evolutionary Origins of a Bioactive Peptide Buried within Preproalbumin."  Plant Cell 26, 981-995 (2014).
PubMed: 24681618

Assembly members:

Assembly members:
PDP-5, polymer, 18 residues, 2262.706 Da.

Natural source:

Natural source:   Common Name: Ox-eye   Taxonomy ID: 192637   Superkingdom: Eukaryota   Kingdom: Viridiplantae   Genus/species: Heliopsis helianthoides

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PDP-5: GRYRRCIPGMFRAYCYMD

Data sets:
Data typeCount
13C chemical shifts45
1H chemical shifts128

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1PawS Derived Peptide 5 (PDP-5)1

Entities:

Entity 1, PawS Derived Peptide 5 (PDP-5) 18 residues - 2262.706 Da.

1   GLYARGTYRARGARGCYSILEPROGLYMET
2   PHEARGALATYRCYSTYRMETASP

Samples:

sample_1: PDP-5 2 mg/mL; Sodium phosphate 20 mM; D2O 10%

sample_2: PDP-5 2 mg/mL; DMSO 10%; D2O 90%

sample_conditions_1: ionic strength: 0 M; pH: 6.1; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D DQF-COSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_2isotropicsample_conditions_1
2D 1H-1H NOESYsample_2isotropicsample_conditions_1
2D 1H-13C HSQCsample_2isotropicsample_conditions_1
2D 1H-1H ECOSYsample_2isotropicsample_conditions_1

Software:

TOPSPIN v3.0, Bruker Biospin - collection, processing

XEASY, Bartels et al. - data analysis

CYANA v3.0, Guntert, Mumenthaler and Wuthrich - structure solution

NMR spectrometers:

  • Bruker Avance 600 MHz
  • Bruker Avance 500 MHz

Related Database Links:

GB JX262726 AFQ93657
PDB